Wall clock time and date at job start Wed Apr 1 2020 00:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 O 1.42904 * 109.46985 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46602 * 119.99199 * 2 1 3 6 6 C 1.34774 * 120.00388 * 299.99948 * 5 2 1 7 7 O 1.21281 * 119.99707 * 0.02562 * 6 5 2 8 8 C 1.50695 * 120.00025 * 179.97438 * 6 5 2 9 9 C 1.50703 * 109.47225 * 180.02562 * 8 6 5 10 10 C 1.37638 * 120.12363 * 265.00274 * 9 8 6 11 11 C 1.38617 * 120.24274 * 179.97438 * 10 9 8 12 12 C 1.38656 * 120.50388 * 0.02562 * 11 10 9 13 13 C 1.37596 * 120.24844 * 0.02562 * 12 11 10 14 14 C 1.40689 * 120.12775 * 84.72606 * 9 8 6 15 15 C 1.41398 * 120.24733 * 0.02562 * 14 9 8 16 16 H 1.07998 * 119.99606 * 333.90099 * 15 14 9 17 17 C 1.39945 * 120.00387 * 153.90252 * 15 14 9 18 18 N 1.30820 * 119.99707 * 343.70405 * 17 15 14 19 19 Si 1.86798 * 119.99957 * 163.70761 * 17 15 14 20 20 H 1.48494 * 109.47292 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47135 * 120.00085 * 19 17 15 22 22 H 1.48501 * 109.47121 * 239.99544 * 19 17 15 23 23 C 1.50694 * 109.47317 * 239.99141 * 2 1 3 24 24 C 1.38238 * 120.00458 * 270.00422 * 23 2 1 25 25 C 1.38226 * 120.00150 * 180.02562 * 24 23 2 26 26 C 1.38234 * 120.00429 * 359.95628 * 25 24 23 27 27 C 1.38242 * 119.99445 * 0.27619 * 26 25 24 28 28 C 1.38227 * 120.00146 * 359.53758 * 27 26 25 29 29 H 1.08997 * 109.47457 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47640 * 300.00973 * 1 2 3 31 31 H 1.09004 * 109.46706 * 60.00492 * 1 2 3 32 32 H 1.09004 * 109.46819 * 299.99439 * 3 2 1 33 33 H 1.09000 * 109.47697 * 59.99490 * 3 2 1 34 34 H 0.96705 * 113.99295 * 179.97438 * 4 3 2 35 35 H 0.97006 * 119.99705 * 120.00411 * 5 2 1 36 36 H 1.09001 * 109.47810 * 300.00291 * 8 6 5 37 37 H 1.09001 * 109.47367 * 60.00446 * 8 6 5 38 38 H 1.07993 * 119.87789 * 359.97438 * 10 9 8 39 39 H 1.08004 * 119.74550 * 179.97438 * 11 10 9 40 40 H 1.08004 * 119.87270 * 180.02562 * 12 11 10 41 41 H 1.07996 * 120.13006 * 179.97438 * 13 12 11 42 42 H 0.97004 * 119.99757 * 180.02562 * 18 17 15 43 43 H 1.08002 * 119.99616 * 359.97438 * 24 23 2 44 44 H 1.08003 * 120.00170 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.00432 * 180.02562 * 26 25 24 46 46 H 1.08006 * 119.99380 * 179.72355 * 27 26 25 47 47 H 1.08002 * 120.00007 * 180.21148 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 0.0006 5 7 2.0182 -0.6905 1.1963 6 6 1.6926 -0.2299 2.4204 7 8 0.9950 0.7560 2.5315 8 6 2.1944 -0.9405 3.6509 9 6 1.6916 -0.2303 4.8813 10 6 2.4784 0.7107 5.5056 11 6 2.0182 1.3659 6.6372 12 6 0.7630 1.0819 7.1534 13 6 -0.0401 0.1441 6.5462 14 6 0.4139 -0.5224 5.3927 15 6 -0.4053 -1.4834 4.7566 16 1 -0.2811 -1.6865 3.7032 17 6 -1.3771 -2.1714 5.4920 18 7 -1.3275 -2.1746 6.7993 19 14 -2.7450 -3.0851 4.6069 20 1 -2.5771 -2.9274 3.1400 21 1 -2.6869 -4.5263 4.9602 22 1 -4.0588 -2.5276 5.0172 23 6 2.0323 -0.7106 -1.2303 24 6 2.2627 -2.0732 -1.1960 25 6 2.7240 -2.7248 -2.3244 26 6 2.9542 -2.0141 -3.4875 27 6 2.7284 -0.6506 -3.5204 28 6 2.2634 0.0004 -2.3931 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6768 1.9562 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 3.8623 2.3258 0.0002 35 1 2.5759 -1.4792 1.1074 36 1 1.8306 -1.9681 3.6509 37 1 3.2844 -0.9410 3.6512 38 1 3.4579 0.9395 5.1125 39 1 2.6425 2.1026 7.1210 40 1 0.4145 1.5988 8.0353 41 1 -1.0173 -0.0759 6.9500 42 1 -2.0009 -2.6517 7.3090 43 1 2.0830 -2.6284 -0.2872 44 1 2.9044 -3.7893 -2.2974 45 1 3.3142 -2.5233 -4.3692 46 1 2.9125 -0.0946 -4.4279 47 1 2.0838 1.0650 -2.4199 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855086611.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:34 Heat of formation + Delta-G solvation = -58.002727 kcal Electronic energy + Delta-G solvation = -29661.876700 eV Core-core repulsion = 25773.300991 eV Total energy + Delta-G solvation = -3888.575709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.58915 -40.09741 -39.09761 -37.74175 -35.98460 -35.48566 -33.69611 -32.64106 -31.70310 -31.31867 -30.45008 -28.38404 -27.17922 -26.82315 -24.49724 -23.30179 -22.81096 -22.26624 -21.01924 -20.51283 -19.10687 -18.72992 -18.28282 -17.26885 -17.23439 -16.94093 -16.25641 -16.22114 -15.97986 -15.55335 -15.42235 -15.19511 -14.96430 -14.75350 -14.60715 -14.37354 -14.07028 -13.83017 -13.48563 -13.38048 -13.34021 -13.19619 -13.11042 -12.89060 -12.74081 -12.68408 -12.53096 -12.45716 -12.11017 -11.94590 -11.61293 -11.31317 -11.19144 -11.06020 -11.01918 -10.36992 -10.05235 -9.78808 -9.56939 -9.21035 -9.14223 -8.58364 -6.27568 0.44032 0.53221 1.00192 1.14656 1.35737 1.48765 1.52244 1.90204 2.20119 2.33320 2.79691 2.92384 3.23611 3.51678 3.77815 3.95370 4.11533 4.15894 4.17131 4.28988 4.34769 4.40106 4.42631 4.56384 4.60415 4.63203 4.65988 4.70249 4.72410 4.76406 4.81230 4.90481 5.06786 5.08153 5.17039 5.21047 5.24815 5.38564 5.51905 5.56334 5.59106 5.65031 5.77998 5.79094 6.05714 6.12470 6.18535 6.22949 6.43971 6.69632 6.77254 6.84640 7.01335 7.12968 7.49617 8.38252 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.012479 B = 0.003681 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.311019 B = 7605.683062 C = 9091.068782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.221 3.779 3 C 0.070 3.930 4 O -0.573 6.573 5 N -0.714 5.714 6 C 0.525 3.475 7 O -0.560 6.560 8 C -0.072 4.072 9 C -0.181 4.181 10 C -0.092 4.092 11 C -0.242 4.242 12 C -0.118 4.118 13 C -0.193 4.193 14 C 0.098 3.902 15 C -0.480 4.480 16 H 0.071 0.929 17 C 0.037 3.963 18 N -0.827 5.827 19 Si 0.969 3.031 20 H -0.262 1.262 21 H -0.262 1.262 22 H -0.270 1.270 23 C -0.081 4.081 24 C -0.132 4.132 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.121 4.121 28 C -0.111 4.111 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.391 0.609 35 H 0.406 0.594 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.285 0.715 43 H 0.122 0.878 44 H 0.141 0.859 45 H 0.145 0.855 46 H 0.145 0.855 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.681 -0.192 -19.841 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.135 3.865 3 C -0.009 4.009 4 O -0.380 6.380 5 N -0.368 5.368 6 C 0.313 3.687 7 O -0.437 6.437 8 C -0.111 4.111 9 C -0.183 4.183 10 C -0.110 4.110 11 C -0.261 4.261 12 C -0.136 4.136 13 C -0.213 4.213 14 C 0.096 3.904 15 C -0.509 4.509 16 H 0.089 0.911 17 C -0.177 4.177 18 N -0.454 5.454 19 Si 0.791 3.209 20 H -0.186 1.186 21 H -0.186 1.186 22 H -0.195 1.195 23 C -0.082 4.082 24 C -0.151 4.151 25 C -0.139 4.139 26 C -0.144 4.144 27 C -0.139 4.139 28 C -0.130 4.130 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.239 0.761 35 H 0.243 0.757 36 H 0.112 0.888 37 H 0.122 0.878 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.096 0.904 43 H 0.140 0.860 44 H 0.159 0.841 45 H 0.163 0.837 46 H 0.163 0.837 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.978 -0.234 -19.546 20.755 hybrid contribution -0.599 -0.008 0.392 0.716 sum 6.378 -0.241 -19.154 20.189 Atomic orbital electron populations 1.22118 0.93339 1.02772 1.03220 1.19126 0.93431 0.90894 0.83091 1.22519 0.81747 0.95815 1.00825 1.86448 1.18949 1.34835 1.97725 1.46054 1.54160 1.32334 1.04241 1.20898 0.79026 0.84027 0.84735 1.90589 1.38334 1.27756 1.87055 1.20276 1.01303 0.99852 0.89699 1.19475 0.95102 1.03861 0.99870 1.20703 0.98589 0.95911 0.95787 1.20696 0.97924 1.06456 1.01028 1.20937 0.95398 0.98061 0.99199 1.21303 1.00044 0.99513 1.00408 1.17700 0.90804 0.90588 0.91294 1.19630 1.15784 1.19050 0.96475 0.91078 1.26637 0.99521 0.96362 0.95205 1.69890 1.32607 1.34989 1.07885 0.85352 0.77795 0.78295 0.79480 1.18572 1.18613 1.19454 1.19646 1.00207 0.94200 0.94101 1.21109 1.00532 0.93870 0.99549 1.21384 0.98836 1.00975 0.92746 1.21504 0.99649 0.94548 0.98662 1.21428 0.98792 0.95147 0.98537 1.21123 0.99189 1.00247 0.92399 0.92230 0.92476 0.89819 0.91000 0.93791 0.76080 0.75684 0.88810 0.87811 0.86964 0.86811 0.87743 0.88535 0.90439 0.86027 0.84149 0.83712 0.83742 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.62 8.38 71.98 0.60 -4.02 16 2 C 0.22 6.08 0.68 2.85 0.00 6.09 16 3 C 0.07 1.84 5.13 71.98 0.37 2.21 16 4 O -0.57 -14.11 12.91 -148.98 -1.92 -16.04 16 5 N -0.71 -21.80 4.72 -426.34 -2.01 -23.81 16 6 C 0.53 20.44 6.86 87.66 0.60 21.04 16 7 O -0.56 -26.03 12.24 -3.03 -0.04 -26.06 16 8 C -0.07 -2.84 5.18 29.10 0.15 -2.69 16 9 C -0.18 -8.84 4.43 -19.41 -0.09 -8.92 16 10 C -0.09 -4.21 9.66 22.22 0.21 -4.00 16 11 C -0.24 -11.18 10.05 22.46 0.23 -10.96 16 12 C -0.12 -5.87 10.02 22.22 0.22 -5.65 16 13 C -0.19 -10.79 8.69 22.73 0.20 -10.60 16 14 C 0.10 5.43 5.56 -21.29 -0.12 5.31 16 15 C -0.48 -26.05 8.14 23.46 0.19 -25.86 16 16 H 0.07 3.77 6.67 -2.91 -0.02 3.75 16 17 C 0.04 1.91 5.16 85.26 0.44 2.35 16 18 N -0.83 -44.28 10.95 21.83 0.24 -44.04 16 19 Si 0.97 39.53 29.59 68.60 2.03 41.56 16 20 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 21 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 23 C -0.08 -1.88 4.51 -19.87 -0.09 -1.97 16 24 C -0.13 -2.86 8.96 22.27 0.20 -2.66 16 25 C -0.12 -2.14 10.05 22.27 0.22 -1.91 16 26 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 27 C -0.12 -1.96 10.05 22.27 0.22 -1.74 16 28 C -0.11 -2.20 8.92 22.27 0.20 -2.00 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 2.10 6.17 -2.39 -0.01 2.09 16 31 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.07 1.50 6.51 -2.38 -0.02 1.49 16 33 H 0.04 1.47 6.17 -2.39 -0.01 1.46 16 34 H 0.39 6.38 9.12 -74.05 -0.68 5.71 16 35 H 0.41 10.58 6.67 -92.70 -0.62 9.96 16 36 H 0.09 3.71 7.08 -2.39 -0.02 3.69 16 37 H 0.10 3.43 8.05 -2.39 -0.02 3.41 16 38 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 39 H 0.11 4.51 8.06 -2.91 -0.02 4.48 16 40 H 0.10 4.64 8.06 -2.91 -0.02 4.61 16 41 H 0.10 5.64 6.20 -2.91 -0.02 5.62 16 42 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 43 H 0.12 2.55 6.71 -2.91 -0.02 2.53 16 44 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 45 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 46 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 47 H 0.13 2.24 6.17 -2.91 -0.02 2.22 16 Total: -1.00 -70.33 380.65 2.01 -68.32 By element: Atomic # 1 Polarization: 48.05 SS G_CDS: -0.28 Total: 47.78 kcal Atomic # 6 Polarization: -51.70 SS G_CDS: 3.99 Total: -47.71 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: -1.77 Total: -67.85 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -1.96 Total: -42.10 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -70.33 2.01 -68.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855086611.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.317 kcal (2) G-P(sol) polarization free energy of solvation -70.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds