Wall clock time and date at job start Wed Apr 1 2020 00:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46984 * 2 1 4 4 O 1.42906 * 109.46806 * 185.00304 * 3 2 1 5 5 N 1.46502 * 109.46971 * 240.00291 * 2 1 3 6 6 C 1.34776 * 120.00163 * 59.99841 * 5 2 1 7 7 O 1.21288 * 119.99668 * 0.02562 * 6 5 2 8 8 C 1.50695 * 120.00542 * 179.97438 * 6 5 2 9 9 C 1.50697 * 109.47727 * 180.02562 * 8 6 5 10 10 C 1.37634 * 120.12871 * 265.00237 * 9 8 6 11 11 C 1.38614 * 120.25192 * 179.97438 * 10 9 8 12 12 C 1.38658 * 120.49818 * 0.02562 * 11 10 9 13 13 C 1.37602 * 120.24902 * 0.02562 * 12 11 10 14 14 C 1.40698 * 120.12472 * 84.72369 * 9 8 6 15 15 C 1.41396 * 120.24511 * 0.02562 * 14 9 8 16 16 H 1.07995 * 120.00082 * 333.89128 * 15 14 9 17 17 C 1.39946 * 120.00026 * 153.90042 * 15 14 9 18 18 N 1.30820 * 120.00071 * 343.70368 * 17 15 14 19 19 Si 1.86801 * 119.99862 * 163.70636 * 17 15 14 20 20 H 1.48496 * 109.47102 * 90.00090 * 19 17 15 21 21 H 1.48506 * 109.46998 * 209.99339 * 19 17 15 22 22 H 1.48490 * 109.47250 * 329.99635 * 19 17 15 23 23 C 1.50697 * 109.47221 * 120.00046 * 2 1 3 24 24 C 1.38231 * 120.00267 * 269.72313 * 23 2 1 25 25 C 1.38233 * 119.99730 * 179.78609 * 24 23 2 26 26 C 1.38230 * 120.00321 * 0.44695 * 25 24 23 27 27 C 1.38237 * 119.99878 * 359.80687 * 26 25 24 28 28 C 1.38228 * 119.99897 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.46687 * 299.99854 * 1 2 3 30 30 H 1.08998 * 109.46883 * 59.99406 * 1 2 3 31 31 H 1.08993 * 109.47053 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47259 * 305.00079 * 3 2 1 33 33 H 1.09000 * 109.46750 * 65.00361 * 3 2 1 34 34 H 0.96697 * 113.99395 * 180.02562 * 4 3 2 35 35 H 0.96998 * 119.99808 * 239.99792 * 5 2 1 36 36 H 1.09000 * 109.46968 * 300.00340 * 8 6 5 37 37 H 1.09005 * 109.47028 * 59.99639 * 8 6 5 38 38 H 1.08005 * 119.87592 * 0.02562 * 10 9 8 39 39 H 1.07992 * 119.75502 * 179.97438 * 11 10 9 40 40 H 1.07998 * 119.87726 * 179.97438 * 12 11 10 41 41 H 1.07994 * 120.13018 * 179.97438 * 13 12 11 42 42 H 0.97001 * 120.00152 * 180.02562 * 18 17 15 43 43 H 1.07997 * 119.99906 * 0.02562 * 24 23 2 44 44 H 1.08000 * 119.99766 * 180.27803 * 25 24 23 45 45 H 1.07999 * 120.00409 * 179.83372 * 26 25 24 46 46 H 1.08000 * 119.99572 * 179.97438 * 27 26 25 47 47 H 1.08004 * 119.99645 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4643 1.4442 -0.1175 5 7 2.0184 -0.6906 -1.1962 6 6 1.6927 -0.2301 -2.4203 7 8 0.9958 0.7563 -2.5315 8 6 2.1954 -0.9400 -3.6508 9 6 1.6935 -0.2293 -4.8813 10 6 0.5441 -0.6573 -5.5057 11 6 0.0798 -0.0052 -6.6373 12 6 0.7661 1.0835 -7.1535 13 6 1.9180 1.5281 -6.5462 14 6 2.3949 0.8780 -5.3927 15 6 3.5740 1.3299 -4.7564 16 1 3.7239 1.1453 -3.7030 17 6 4.5467 2.0167 -5.4917 18 7 4.5333 1.9689 -6.7990 19 14 5.8641 3.0018 -4.6066 20 1 7.0370 2.1313 -4.3391 21 1 6.2807 4.1465 -5.4559 22 1 5.3219 3.5106 -3.3212 23 6 2.0324 -0.7104 1.2304 24 6 2.2683 0.0014 2.3917 25 6 2.7248 -0.6511 3.5215 26 6 2.9544 -2.0137 3.4875 27 6 2.7235 -2.7247 2.3247 28 6 2.2626 -2.0731 1.1962 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 1.9816 -0.8418 33 1 1.7517 1.9298 0.9314 34 1 3.8572 2.3277 -0.1238 35 1 2.5760 -1.4792 -1.1073 36 1 3.2854 -0.9396 -3.6507 37 1 1.8326 -1.9679 -3.6510 38 1 0.0013 -1.5041 -5.1121 39 1 -0.8227 -0.3481 -7.1212 40 1 0.3956 1.5839 -8.0359 41 1 2.4512 2.3760 -6.9500 42 1 5.2077 2.4446 -7.3087 43 1 2.0921 1.0666 2.4173 44 1 2.9049 -0.0957 4.4301 45 1 3.3137 -2.5231 4.3695 46 1 2.9032 -3.7893 2.2981 47 1 2.0826 -2.6285 0.2876 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855086612.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:39 Heat of formation + Delta-G solvation = -37.898718 kcal Electronic energy + Delta-G solvation = -29775.839129 eV Core-core repulsion = 25888.135194 eV Total energy + Delta-G solvation = -3887.703934 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.42580 -38.82337 -37.45930 -36.47443 -34.76557 -33.55976 -32.16580 -31.31464 -30.82493 -29.51107 -29.35132 -26.67013 -26.03179 -24.94106 -23.48736 -22.47676 -20.96443 -20.81462 -19.49937 -19.18053 -17.71870 -17.14224 -17.05568 -16.06302 -15.86154 -15.34759 -15.12832 -14.73890 -14.58604 -14.30388 -14.18578 -13.82631 -13.52877 -13.41116 -13.29868 -12.96903 -12.76734 -12.53376 -12.26860 -12.20489 -11.98600 -11.72789 -11.61871 -11.50864 -11.16166 -11.09468 -10.95241 -10.91516 -10.65116 -10.60035 -10.34194 -9.82051 -9.42727 -9.30912 -9.09795 -9.03641 -8.97454 -8.84176 -8.52701 -7.25380 -7.22741 -6.67768 -4.27431 1.23298 1.28945 2.83906 3.02531 3.10258 3.15544 3.31880 3.41087 3.60092 3.75606 3.98949 4.32448 4.48592 4.72096 4.77577 4.85425 4.97321 5.18841 5.29708 5.37954 5.41781 5.53899 5.63256 5.75059 5.81965 5.86384 5.87380 5.91497 6.04327 6.09808 6.21470 6.31576 6.34011 6.38422 6.39115 6.44296 6.51452 6.56513 6.85852 6.87088 6.93772 7.15741 7.35617 7.48264 7.70845 7.82939 7.96538 8.04866 8.15772 8.19027 8.38097 8.71957 8.95752 8.98789 9.08041 10.26390 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.012699 B = 0.003758 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.359371 B = 7448.652196 C = 8800.460283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.223 3.777 3 C 0.063 3.937 4 O -0.560 6.560 5 N -0.728 5.728 6 C 0.523 3.477 7 O -0.522 6.522 8 C -0.072 4.072 9 C -0.178 4.178 10 C -0.082 4.082 11 C -0.241 4.241 12 C -0.108 4.108 13 C -0.160 4.160 14 C 0.130 3.870 15 C -0.454 4.454 16 H 0.077 0.923 17 C 0.077 3.923 18 N -0.797 5.797 19 Si 0.903 3.097 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.067 4.067 24 C -0.105 4.105 25 C -0.119 4.119 26 C -0.126 4.126 27 C -0.117 4.117 28 C -0.116 4.116 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.376 0.624 35 H 0.395 0.605 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.278 0.722 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.121 0.879 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.690 -5.303 17.294 18.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.136 3.864 3 C -0.016 4.016 4 O -0.364 6.364 5 N -0.382 5.382 6 C 0.312 3.688 7 O -0.396 6.396 8 C -0.111 4.111 9 C -0.180 4.180 10 C -0.100 4.100 11 C -0.260 4.260 12 C -0.126 4.126 13 C -0.180 4.180 14 C 0.127 3.873 15 C -0.484 4.484 16 H 0.095 0.905 17 C -0.140 4.140 18 N -0.423 5.423 19 Si 0.728 3.272 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.067 4.067 24 C -0.123 4.123 25 C -0.137 4.137 26 C -0.144 4.144 27 C -0.135 4.135 28 C -0.135 4.135 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.222 0.778 35 H 0.231 0.769 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.134 0.866 42 H 0.089 0.911 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.163 -5.142 16.965 17.859 hybrid contribution 1.070 0.698 0.421 1.345 sum -1.092 -4.443 17.386 17.978 Atomic orbital electron populations 1.22170 0.92723 1.02918 1.03826 1.19039 0.93766 0.90565 0.82992 1.22667 0.82184 0.96141 1.00602 1.86480 1.19464 1.33275 1.97219 1.46191 1.55003 1.32348 1.04698 1.21105 0.79319 0.84584 0.83833 1.90593 1.37135 1.25494 1.86397 1.20266 1.02410 0.97672 0.90781 1.19036 1.00004 1.00027 0.98883 1.20288 0.95423 0.98362 0.95916 1.20287 1.02307 1.02285 1.01133 1.20666 0.96326 0.97073 0.98565 1.21292 0.95939 1.01704 0.99025 1.17331 0.91070 0.88183 0.90701 1.19505 1.01148 1.31024 0.96675 0.90525 1.25878 0.98698 0.94859 0.94600 1.69826 1.32039 1.33785 1.06618 0.86397 0.80552 0.79723 0.80539 1.19610 1.20304 1.18571 1.19801 0.98557 0.93821 0.94567 1.21003 0.99072 0.99805 0.92424 1.21101 0.99695 0.94724 0.98140 1.21125 1.00714 0.94478 0.98100 1.21101 0.99476 0.99844 0.93067 1.20961 0.99897 0.93963 0.98636 0.92052 0.89247 0.91988 0.90582 0.93783 0.77827 0.76946 0.88637 0.90845 0.89869 0.89782 0.89702 0.86603 0.91076 0.85958 0.86178 0.86299 0.86058 0.85934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 8.38 37.16 0.31 -1.81 16 2 C 0.22 3.12 0.68 -132.97 -0.09 3.03 16 3 C 0.06 0.92 5.13 37.16 0.19 1.11 16 4 O -0.56 -8.61 13.10 -35.23 -0.46 -9.07 16 5 N -0.73 -11.18 4.62 -48.68 -0.23 -11.41 16 6 C 0.52 10.09 6.86 -10.99 -0.08 10.01 16 7 O -0.52 -11.77 12.30 5.55 0.07 -11.71 16 8 C -0.07 -1.42 5.18 -29.04 -0.15 -1.57 16 9 C -0.18 -4.29 4.43 -103.92 -0.46 -4.75 16 10 C -0.08 -1.89 9.66 -39.66 -0.38 -2.28 16 11 C -0.24 -5.66 10.05 -39.29 -0.39 -6.06 16 12 C -0.11 -2.66 10.02 -39.66 -0.40 -3.06 16 13 C -0.16 -4.32 8.69 -38.87 -0.34 -4.66 16 14 C 0.13 3.48 5.56 -106.82 -0.59 2.88 16 15 C -0.45 -12.02 8.14 -37.74 -0.31 -12.33 16 16 H 0.08 2.01 6.67 -52.49 -0.35 1.66 16 17 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 18 N -0.80 -20.80 10.95 55.55 0.61 -20.19 16 19 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 21 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 23 C -0.07 -0.82 4.60 -104.63 -0.48 -1.31 16 24 C -0.10 -1.18 9.07 -39.59 -0.36 -1.54 16 25 C -0.12 -1.17 10.05 -39.59 -0.40 -1.56 16 26 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 27 C -0.12 -1.15 10.05 -39.59 -0.40 -1.54 16 28 C -0.12 -1.30 8.96 -39.58 -0.35 -1.65 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.44 6.17 -51.93 -0.32 1.12 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.35 6.32 -51.93 -0.33 1.02 16 33 H 0.04 0.53 6.21 -51.93 -0.32 0.20 16 34 H 0.38 4.53 9.12 45.56 0.42 4.95 16 35 H 0.40 5.29 6.67 -40.82 -0.27 5.02 16 36 H 0.10 1.93 7.08 -51.93 -0.37 1.56 16 37 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 38 H 0.08 1.70 8.06 -52.48 -0.42 1.28 16 39 H 0.08 1.76 8.06 -52.49 -0.42 1.33 16 40 H 0.08 1.88 8.06 -52.49 -0.42 1.45 16 41 H 0.12 3.21 6.20 -52.49 -0.33 2.89 16 42 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 43 H 0.12 1.25 6.04 -52.49 -0.32 0.94 16 44 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 47 H 0.12 1.24 6.71 -52.48 -0.35 0.88 16 LS Contribution 380.78 15.07 5.74 5.74 Total: -1.00 -31.67 380.78 -9.94 -41.62 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -5.48 Total: 17.74 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -5.17 Total: -26.80 kcal Atomic # 7 Polarization: -31.98 SS G_CDS: 0.38 Total: -31.60 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.39 Total: -20.78 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.67 -9.94 -41.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855086612.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.719 kcal (2) G-P(sol) polarization free energy of solvation -31.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds