Wall clock time and date at job start Wed Apr 1 2020 00:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46984 * 2 1 4 4 O 1.42906 * 109.46806 * 185.00304 * 3 2 1 5 5 N 1.46502 * 109.46971 * 240.00291 * 2 1 3 6 6 C 1.34776 * 120.00163 * 59.99841 * 5 2 1 7 7 O 1.21288 * 119.99668 * 0.02562 * 6 5 2 8 8 C 1.50695 * 120.00542 * 179.97438 * 6 5 2 9 9 C 1.50697 * 109.47727 * 180.02562 * 8 6 5 10 10 C 1.37634 * 120.12871 * 265.00237 * 9 8 6 11 11 C 1.38614 * 120.25192 * 179.97438 * 10 9 8 12 12 C 1.38658 * 120.49818 * 0.02562 * 11 10 9 13 13 C 1.37602 * 120.24902 * 0.02562 * 12 11 10 14 14 C 1.40698 * 120.12472 * 84.72369 * 9 8 6 15 15 C 1.41396 * 120.24511 * 0.02562 * 14 9 8 16 16 H 1.07995 * 120.00082 * 333.89128 * 15 14 9 17 17 C 1.39946 * 120.00026 * 153.90042 * 15 14 9 18 18 N 1.30820 * 120.00071 * 343.70368 * 17 15 14 19 19 Si 1.86801 * 119.99862 * 163.70636 * 17 15 14 20 20 H 1.48496 * 109.47102 * 90.00090 * 19 17 15 21 21 H 1.48506 * 109.46998 * 209.99339 * 19 17 15 22 22 H 1.48490 * 109.47250 * 329.99635 * 19 17 15 23 23 C 1.50697 * 109.47221 * 120.00046 * 2 1 3 24 24 C 1.38231 * 120.00267 * 269.72313 * 23 2 1 25 25 C 1.38233 * 119.99730 * 179.78609 * 24 23 2 26 26 C 1.38230 * 120.00321 * 0.44695 * 25 24 23 27 27 C 1.38237 * 119.99878 * 359.80687 * 26 25 24 28 28 C 1.38228 * 119.99897 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.46687 * 299.99854 * 1 2 3 30 30 H 1.08998 * 109.46883 * 59.99406 * 1 2 3 31 31 H 1.08993 * 109.47053 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47259 * 305.00079 * 3 2 1 33 33 H 1.09000 * 109.46750 * 65.00361 * 3 2 1 34 34 H 0.96697 * 113.99395 * 180.02562 * 4 3 2 35 35 H 0.96998 * 119.99808 * 239.99792 * 5 2 1 36 36 H 1.09000 * 109.46968 * 300.00340 * 8 6 5 37 37 H 1.09005 * 109.47028 * 59.99639 * 8 6 5 38 38 H 1.08005 * 119.87592 * 0.02562 * 10 9 8 39 39 H 1.07992 * 119.75502 * 179.97438 * 11 10 9 40 40 H 1.07998 * 119.87726 * 179.97438 * 12 11 10 41 41 H 1.07994 * 120.13018 * 179.97438 * 13 12 11 42 42 H 0.97001 * 120.00152 * 180.02562 * 18 17 15 43 43 H 1.07997 * 119.99906 * 0.02562 * 24 23 2 44 44 H 1.08000 * 119.99766 * 180.27803 * 25 24 23 45 45 H 1.07999 * 120.00409 * 179.83372 * 26 25 24 46 46 H 1.08000 * 119.99572 * 179.97438 * 27 26 25 47 47 H 1.08004 * 119.99645 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4643 1.4442 -0.1175 5 7 2.0184 -0.6906 -1.1962 6 6 1.6927 -0.2301 -2.4203 7 8 0.9958 0.7563 -2.5315 8 6 2.1954 -0.9400 -3.6508 9 6 1.6935 -0.2293 -4.8813 10 6 0.5441 -0.6573 -5.5057 11 6 0.0798 -0.0052 -6.6373 12 6 0.7661 1.0835 -7.1535 13 6 1.9180 1.5281 -6.5462 14 6 2.3949 0.8780 -5.3927 15 6 3.5740 1.3299 -4.7564 16 1 3.7239 1.1453 -3.7030 17 6 4.5467 2.0167 -5.4917 18 7 4.5333 1.9689 -6.7990 19 14 5.8641 3.0018 -4.6066 20 1 7.0370 2.1313 -4.3391 21 1 6.2807 4.1465 -5.4559 22 1 5.3219 3.5106 -3.3212 23 6 2.0324 -0.7104 1.2304 24 6 2.2683 0.0014 2.3917 25 6 2.7248 -0.6511 3.5215 26 6 2.9544 -2.0137 3.4875 27 6 2.7235 -2.7247 2.3247 28 6 2.2626 -2.0731 1.1962 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 1.9816 -0.8418 33 1 1.7517 1.9298 0.9314 34 1 3.8572 2.3277 -0.1238 35 1 2.5760 -1.4792 -1.1073 36 1 3.2854 -0.9396 -3.6507 37 1 1.8326 -1.9679 -3.6510 38 1 0.0013 -1.5041 -5.1121 39 1 -0.8227 -0.3481 -7.1212 40 1 0.3956 1.5839 -8.0359 41 1 2.4512 2.3760 -6.9500 42 1 5.2077 2.4446 -7.3087 43 1 2.0921 1.0666 2.4173 44 1 2.9049 -0.0957 4.4301 45 1 3.3137 -2.5231 4.3695 46 1 2.9032 -3.7893 2.2981 47 1 2.0826 -2.6285 0.2876 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855086612.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:38 Heat of formation + Delta-G solvation = -57.186871 kcal Electronic energy + Delta-G solvation = -29776.675526 eV Core-core repulsion = 25888.135194 eV Total energy + Delta-G solvation = -3888.540331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.57480 -40.08891 -39.08727 -37.74020 -35.97690 -35.47812 -33.68786 -32.64165 -31.70419 -31.31098 -30.43779 -28.37643 -27.16438 -26.82267 -24.50048 -23.29344 -22.80033 -22.25744 -21.00816 -20.50498 -19.09987 -18.71707 -18.31516 -17.28899 -17.22286 -16.88363 -16.30132 -16.16758 -15.96920 -15.55918 -15.42305 -15.18812 -14.99171 -14.74357 -14.58180 -14.36414 -14.08300 -13.77908 -13.52618 -13.36202 -13.31574 -13.17738 -13.10053 -12.87303 -12.72787 -12.65953 -12.55331 -12.44250 -12.11420 -11.94551 -11.60492 -11.30499 -11.19089 -11.04061 -11.00485 -10.36582 -10.03578 -9.78917 -9.56943 -9.20080 -9.13327 -8.57666 -6.26382 0.43958 0.53034 1.01551 1.15625 1.35527 1.47221 1.54219 1.91841 2.21205 2.34819 2.80498 2.92016 3.25203 3.51047 3.78761 3.95318 4.09904 4.16416 4.18038 4.28395 4.35863 4.41770 4.42647 4.56221 4.62142 4.63601 4.67279 4.72346 4.73212 4.78163 4.82083 4.90386 5.06987 5.09622 5.17058 5.22745 5.24707 5.39294 5.52368 5.57091 5.59001 5.65025 5.78406 5.80168 6.06360 6.12386 6.20056 6.23731 6.45027 6.71357 6.78234 6.79096 7.02471 7.13924 7.51893 8.38634 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.012699 B = 0.003758 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.359371 B = 7448.652196 C = 8800.460283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.221 3.779 3 C 0.065 3.935 4 O -0.575 6.575 5 N -0.712 5.712 6 C 0.526 3.474 7 O -0.560 6.560 8 C -0.072 4.072 9 C -0.182 4.182 10 C -0.091 4.091 11 C -0.243 4.243 12 C -0.118 4.118 13 C -0.194 4.194 14 C 0.098 3.902 15 C -0.478 4.478 16 H 0.070 0.930 17 C 0.036 3.964 18 N -0.828 5.828 19 Si 0.970 3.030 20 H -0.260 1.260 21 H -0.269 1.269 22 H -0.263 1.263 23 C -0.082 4.082 24 C -0.117 4.117 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.120 4.120 28 C -0.129 4.129 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.387 0.613 35 H 0.406 0.594 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.285 0.715 43 H 0.127 0.873 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.143 0.857 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.404 -6.872 19.873 21.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.135 3.865 3 C -0.014 4.014 4 O -0.381 6.381 5 N -0.366 5.366 6 C 0.314 3.686 7 O -0.438 6.438 8 C -0.111 4.111 9 C -0.184 4.184 10 C -0.109 4.109 11 C -0.262 4.262 12 C -0.136 4.136 13 C -0.214 4.214 14 C 0.096 3.904 15 C -0.508 4.508 16 H 0.088 0.912 17 C -0.178 4.178 18 N -0.455 5.455 19 Si 0.792 3.208 20 H -0.185 1.185 21 H -0.194 1.194 22 H -0.187 1.187 23 C -0.083 4.083 24 C -0.135 4.135 25 C -0.140 4.140 26 C -0.144 4.144 27 C -0.138 4.138 28 C -0.147 4.147 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.235 0.765 35 H 0.243 0.757 36 H 0.107 0.893 37 H 0.127 0.873 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.122 0.878 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.144 0.856 44 H 0.160 0.840 45 H 0.163 0.837 46 H 0.161 0.839 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.866 -6.738 19.564 20.776 hybrid contribution 0.910 1.103 -0.336 1.470 sum -0.956 -5.635 19.228 20.059 Atomic orbital electron populations 1.22094 0.92481 1.03220 1.03224 1.19139 0.94021 0.90258 0.83106 1.22637 0.81714 0.96636 1.00402 1.86436 1.19824 1.34588 1.97268 1.46019 1.54124 1.32291 1.04179 1.20887 0.78998 0.84007 0.84738 1.90594 1.39093 1.27066 1.87054 1.20275 1.01993 0.99156 0.89704 1.19485 0.99836 0.99167 0.99904 1.20715 0.95263 0.99215 0.95730 1.20699 1.02931 1.01449 1.01085 1.20937 0.95801 0.97704 0.99186 1.21296 0.97391 1.02227 1.00443 1.17706 0.91991 0.89458 0.91281 1.19597 1.01944 1.32805 0.96432 0.91202 1.26650 1.00628 0.95309 0.95202 1.69886 1.33125 1.34554 1.07892 0.85384 0.77896 0.78399 0.79159 1.18495 1.19396 1.18696 1.19666 1.00277 0.94376 0.93963 1.21149 0.99513 1.00188 0.92659 1.21412 0.98883 0.95261 0.98444 1.21508 0.99605 0.94461 0.98852 1.21409 0.98674 1.01063 0.92674 1.21120 1.00341 0.93658 0.99600 0.90075 0.92327 0.91172 0.94268 0.90953 0.76476 0.75703 0.89274 0.87342 0.86652 0.86768 0.87795 0.88614 0.90483 0.85553 0.83967 0.83741 0.83873 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 8.38 71.98 0.60 -3.41 16 2 C 0.22 6.04 0.68 2.86 0.00 6.04 16 3 C 0.06 1.90 5.13 71.98 0.37 2.27 16 4 O -0.57 -17.55 13.10 -148.98 -1.95 -19.50 16 5 N -0.71 -21.54 4.62 -426.31 -1.97 -23.51 16 6 C 0.53 20.41 6.86 87.66 0.60 21.01 16 7 O -0.56 -26.09 12.30 -3.05 -0.04 -26.13 16 8 C -0.07 -2.84 5.18 29.10 0.15 -2.68 16 9 C -0.18 -8.88 4.43 -19.41 -0.09 -8.96 16 10 C -0.09 -4.15 9.66 22.22 0.21 -3.93 16 11 C -0.24 -11.18 10.05 22.46 0.23 -10.95 16 12 C -0.12 -5.90 10.02 22.22 0.22 -5.68 16 13 C -0.19 -10.89 8.69 22.73 0.20 -10.69 16 14 C 0.10 5.44 5.56 -21.29 -0.12 5.32 16 15 C -0.48 -26.30 8.14 23.46 0.19 -26.11 16 16 H 0.07 3.81 6.67 -2.91 -0.02 3.79 16 17 C 0.04 1.89 5.16 85.26 0.44 2.33 16 18 N -0.83 -44.73 10.95 21.83 0.24 -44.50 16 19 Si 0.97 39.98 29.59 68.60 2.03 42.01 16 20 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 21 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 22 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 23 C -0.08 -1.89 4.60 -19.87 -0.09 -1.98 16 24 C -0.12 -2.38 9.07 22.27 0.20 -2.17 16 25 C -0.12 -2.03 10.05 22.27 0.22 -1.81 16 26 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 27 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 28 C -0.13 -2.60 8.96 22.27 0.20 -2.40 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 30 H 0.06 1.94 6.17 -2.39 -0.01 1.92 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.45 6.32 -2.39 -0.02 1.43 16 33 H 0.07 1.67 6.21 -2.39 -0.01 1.66 16 34 H 0.39 9.31 9.12 -74.06 -0.68 8.63 16 35 H 0.41 10.41 6.67 -92.71 -0.62 9.79 16 36 H 0.09 3.63 7.08 -2.39 -0.02 3.62 16 37 H 0.11 3.43 8.05 -2.38 -0.02 3.41 16 38 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 39 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 40 H 0.10 4.63 8.06 -2.91 -0.02 4.60 16 41 H 0.10 5.63 6.20 -2.91 -0.02 5.61 16 42 H 0.28 13.99 8.30 -92.71 -0.77 13.22 16 43 H 0.13 2.35 6.04 -2.91 -0.02 2.33 16 44 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 45 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 46 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 47 H 0.13 2.32 6.71 -2.91 -0.02 2.30 16 Total: -1.00 -71.11 380.78 2.03 -69.08 By element: Atomic # 1 Polarization: 50.11 SS G_CDS: -0.28 Total: 49.83 kcal Atomic # 6 Polarization: -51.29 SS G_CDS: 4.00 Total: -47.29 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -1.73 Total: -68.00 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -1.99 Total: -45.63 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -71.11 2.03 -69.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855086612.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.895 kcal (2) G-P(sol) polarization free energy of solvation -71.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds