Wall clock time and date at job start Wed Apr 1 2020 00:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.70445 * 2 1 4 4 C 1.53197 * 109.58644 * 120.35996 * 2 1 3 5 5 C 1.53045 * 109.31201 * 65.14639 * 4 2 1 6 6 H 1.08994 * 109.44868 * 301.34951 * 5 4 2 7 7 N 1.46498 * 109.45478 * 181.38665 * 5 4 2 8 8 C 1.34786 * 119.99716 * 154.93491 * 7 5 4 9 9 O 1.21550 * 119.99667 * 359.97438 * 8 7 5 10 10 C 1.47837 * 119.99825 * 179.97438 * 8 7 5 11 11 C 1.40023 * 120.55606 * 179.97438 * 10 8 7 12 12 C 1.38356 * 118.28708 * 180.02562 * 11 10 8 13 13 C 1.38356 * 119.30537 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.46154 * 179.72684 * 13 12 11 15 15 F 1.39903 * 109.46698 * 299.99568 * 14 13 12 16 16 F 1.39899 * 109.47381 * 59.99012 * 14 13 12 17 17 N 1.31926 * 121.07837 * 359.97438 * 13 12 11 18 18 C 1.31696 * 121.87996 * 0.02562 * 17 13 12 19 19 C 1.53038 * 109.53761 * 61.36853 * 5 4 2 20 20 C 1.53187 * 109.31423 * 298.63495 * 19 5 4 21 21 N 1.46923 * 109.58565 * 239.64384 * 2 1 3 22 22 C 1.36940 * 120.62983 * 113.80064 * 21 2 1 23 23 H 1.08000 * 119.99847 * 27.69651 * 22 21 2 24 24 C 1.38819 * 119.99900 * 207.69298 * 22 21 2 25 25 N 1.31619 * 119.99950 * 17.36917 * 24 22 21 26 26 Si 1.86801 * 119.99738 * 197.36523 * 24 22 21 27 27 H 1.48498 * 109.47392 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46941 * 120.00511 * 26 24 22 29 29 H 1.48506 * 109.46922 * 240.00200 * 26 24 22 30 30 H 1.08995 * 109.47448 * 180.35090 * 1 2 3 31 31 H 1.09003 * 109.46988 * 300.35394 * 1 2 3 32 32 H 1.09002 * 109.47055 * 60.35150 * 1 2 3 33 33 H 1.09006 * 109.49099 * 305.19823 * 4 2 1 34 34 H 1.08992 * 109.49859 * 185.09948 * 4 2 1 35 35 H 0.97004 * 120.00427 * 334.93388 * 7 5 4 36 36 H 1.08002 * 120.85559 * 0.04240 * 11 10 8 37 37 H 1.08001 * 120.34971 * 180.02562 * 12 11 10 38 38 H 1.09000 * 109.47116 * 179.97438 * 14 13 12 39 39 H 1.07997 * 119.71706 * 179.97438 * 18 17 13 40 40 H 1.09007 * 109.49480 * 58.58012 * 19 5 4 41 41 H 1.08995 * 109.49490 * 178.64466 * 19 5 4 42 42 H 1.08997 * 109.59222 * 174.42007 * 20 19 5 43 43 H 1.09001 * 109.58605 * 294.70519 * 20 19 5 44 44 H 0.96996 * 119.99889 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7295 1.2454 5 6 1.6413 -2.2042 1.1700 6 1 0.5564 -2.2813 1.0992 7 7 2.1022 -2.8979 2.3753 8 6 1.4739 -4.0154 2.7914 9 8 0.5248 -4.4473 2.1670 10 6 1.9394 -4.7157 4.0074 11 6 1.2951 -5.8773 4.4505 12 6 1.7694 -6.4944 5.5943 13 6 2.8544 -5.9493 6.2576 14 6 3.3701 -6.6151 7.5073 15 9 2.3566 -6.6462 8.4712 16 9 3.7696 -7.9222 7.2085 17 7 3.4418 -4.8534 5.8167 18 6 3.0274 -4.2299 4.7333 19 6 2.2798 -2.8465 -0.0636 20 6 1.7691 -2.1411 -1.3238 21 7 2.0225 -0.6996 -1.1944 22 6 2.7044 -0.0209 -2.1690 23 1 3.2696 0.8640 -1.9160 24 6 2.6692 -0.4703 -3.4819 25 7 1.7364 -1.3172 -3.8628 26 14 3.9457 0.1269 -4.7080 27 1 4.8777 1.0665 -4.0343 28 1 4.7081 -1.0340 -5.2338 29 1 3.2664 0.8224 -5.8306 30 1 -0.3634 -1.0276 0.0063 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5084 -0.8931 33 1 1.6074 -0.2785 2.1368 34 1 3.1296 -0.6505 1.2913 35 1 2.8595 -2.5530 2.8738 36 1 0.4498 -6.2811 3.9131 37 1 1.2978 -7.3923 5.9655 38 1 4.2216 -6.0544 7.8928 39 1 3.5340 -3.3348 4.4038 40 1 3.3638 -2.7475 -0.0053 41 1 2.0125 -3.9024 -0.1034 42 1 2.2943 -2.5274 -2.1972 43 1 0.6990 -2.3177 -1.4331 44 1 1.7117 -1.6309 -4.7803 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947369043.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:01 Heat of formation + Delta-G solvation = -80.366825 kcal Electronic energy + Delta-G solvation = -29037.213171 eV Core-core repulsion = 24625.730902 eV Total energy + Delta-G solvation = -4411.482268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.51497 -47.49944 -41.05756 -39.50774 -37.78495 -34.72967 -33.30969 -32.89531 -32.33800 -30.82536 -29.64908 -27.66428 -26.83597 -24.47245 -24.33171 -23.47734 -22.05278 -21.77044 -20.63102 -18.92689 -18.29916 -18.13014 -17.75327 -17.65648 -16.79664 -16.59640 -15.69835 -15.43309 -15.16309 -14.89410 -14.51111 -14.48113 -14.03839 -13.86417 -13.84918 -13.79264 -13.71379 -13.60812 -13.12735 -12.93926 -12.69108 -12.53891 -12.27089 -11.80155 -11.46607 -11.13212 -10.98489 -10.86695 -10.68989 -10.49097 -10.45383 -10.40801 -10.21903 -10.07631 -9.85984 -9.82213 -9.77156 -9.42736 -8.85906 -8.46089 -6.73484 -5.82073 -3.24526 -0.02085 0.65537 2.50991 2.76566 3.03450 3.34955 3.35105 3.43180 3.44763 3.64967 3.84951 4.16681 4.27799 4.45507 4.45648 4.50063 4.55647 4.74152 4.99985 5.19145 5.32412 5.35525 5.41395 5.51889 5.56157 5.70882 5.89008 5.94592 6.00414 6.17360 6.22643 6.33281 6.39187 6.52566 6.58231 6.72523 6.77630 6.89149 7.10923 7.12167 7.32935 7.46837 7.65615 7.77243 8.11435 8.41771 9.17653 9.81056 10.37254 11.26246 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.024537 B = 0.002141 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.841357 B =13074.982512 C =13324.445181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.170 3.830 3 H 0.067 0.933 4 C -0.133 4.133 5 C 0.149 3.851 6 H 0.089 0.911 7 N -0.714 5.714 8 C 0.556 3.444 9 O -0.527 6.527 10 C -0.157 4.157 11 C -0.017 4.017 12 C -0.138 4.138 13 C 0.063 3.937 14 C 0.324 3.676 15 F -0.192 7.192 16 F -0.192 7.192 17 N -0.460 5.460 18 C 0.135 3.865 19 C -0.147 4.147 20 C 0.173 3.827 21 N -0.585 5.585 22 C -0.253 4.253 23 H 0.067 0.933 24 C 0.003 3.997 25 N -0.900 5.900 26 Si 0.901 3.099 27 H -0.278 1.278 28 H -0.289 1.289 29 H -0.291 1.291 30 H 0.049 0.951 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.394 0.606 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.134 0.866 39 H 0.169 0.831 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.090 0.910 43 H 0.022 0.978 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.354 -8.109 22.009 23.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.062 3.938 3 H 0.085 0.915 4 C -0.173 4.173 5 C 0.046 3.954 6 H 0.107 0.893 7 N -0.364 5.364 8 C 0.341 3.659 9 O -0.404 6.404 10 C -0.162 4.162 11 C -0.044 4.044 12 C -0.157 4.157 13 C -0.076 4.076 14 C 0.270 3.730 15 F -0.173 7.173 16 F -0.173 7.173 17 N -0.168 5.168 18 C -0.024 4.024 19 C -0.188 4.188 20 C 0.047 3.953 21 N -0.306 5.306 22 C -0.382 4.382 23 H 0.084 0.916 24 C -0.196 4.196 25 N -0.544 5.544 26 Si 0.731 3.269 27 H -0.203 1.203 28 H -0.216 1.216 29 H -0.218 1.218 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.229 0.771 36 H 0.175 0.825 37 H 0.167 0.833 38 H 0.151 0.849 39 H 0.186 0.814 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.108 0.892 43 H 0.040 0.960 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.351 -8.159 21.831 23.424 hybrid contribution 0.192 -0.073 -0.916 0.938 sum 2.544 -8.233 20.915 22.621 Atomic orbital electron populations 1.22312 0.98666 1.01112 1.00168 1.20439 0.91799 0.95150 0.86443 0.91523 1.22322 1.01296 0.93894 0.99801 1.21214 1.00041 0.91428 0.82723 0.89340 1.46303 1.34222 1.26618 1.29287 1.17934 0.83234 0.81078 0.83702 1.90818 1.27569 1.65477 1.56501 1.21344 0.98678 0.98136 0.98084 1.21821 0.97546 0.91711 0.93310 1.21927 0.96640 1.01404 0.95774 1.21673 0.94732 0.94042 0.97114 1.20110 0.88847 0.80275 0.83786 1.93043 1.63289 1.96587 1.64384 1.93045 1.90894 1.39544 1.93790 1.67226 1.29024 1.07067 1.13530 1.22979 0.92290 0.97989 0.89143 1.22585 1.00255 0.99184 0.96744 1.20744 0.97811 0.82916 0.93826 1.44183 1.63769 1.03432 1.19245 1.19200 1.22048 1.10254 0.86738 0.91568 1.25053 0.97715 0.99983 0.96819 1.70041 1.31719 1.35734 1.16883 0.86252 0.81329 0.78051 0.81289 1.20269 1.21600 1.21755 0.93211 0.94464 0.92540 0.92457 0.91730 0.77116 0.82491 0.83348 0.84858 0.81357 0.92540 0.92868 0.89199 0.96004 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.03 37.16 0.34 -2.67 16 2 C 0.17 3.27 3.29 -67.60 -0.22 3.04 16 3 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 4 C -0.13 -2.05 5.02 -26.61 -0.13 -2.18 16 5 C 0.15 2.38 2.21 -67.89 -0.15 2.23 16 6 H 0.09 1.61 5.92 -51.93 -0.31 1.30 16 7 N -0.71 -9.02 5.03 -54.71 -0.28 -9.29 16 8 C 0.56 7.57 7.75 -12.33 -0.10 7.48 16 9 O -0.53 -9.21 16.08 5.32 0.09 -9.12 16 10 C -0.16 -1.68 5.89 -104.82 -0.62 -2.30 16 11 C -0.02 -0.17 9.72 -38.87 -0.38 -0.55 16 12 C -0.14 -1.17 9.60 -39.49 -0.38 -1.55 16 13 C 0.06 0.56 6.28 -82.51 -0.52 0.04 16 14 C 0.32 2.35 5.54 36.00 0.20 2.55 16 15 F -0.19 -1.59 17.25 2.25 0.04 -1.55 16 16 F -0.19 -1.61 17.25 2.25 0.04 -1.57 16 17 N -0.46 -4.36 10.23 -9.14 -0.09 -4.45 16 18 C 0.14 1.22 10.71 -17.13 -0.18 1.04 16 19 C -0.15 -2.78 5.65 -26.61 -0.15 -2.93 16 20 C 0.17 4.02 4.89 -3.71 -0.02 4.01 16 21 N -0.58 -13.75 2.70 -164.77 -0.45 -14.20 16 22 C -0.25 -6.63 9.59 -15.06 -0.14 -6.78 16 23 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 24 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 25 N -0.90 -25.58 11.19 55.49 0.62 -24.96 16 26 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H 0.05 0.95 5.73 -51.93 -0.30 0.65 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.39 3.70 6.67 -40.82 -0.27 3.42 16 36 H 0.16 1.45 7.74 -52.49 -0.41 1.04 16 37 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.13 0.65 8.10 -51.93 -0.42 0.23 16 39 H 0.17 1.08 6.42 -52.49 -0.34 0.74 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 43 H 0.02 0.54 7.51 -51.93 -0.39 0.15 16 44 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 365.87 15.07 5.51 5.51 Total: -1.00 -31.33 365.87 -7.75 -39.08 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.66 Total: 2.94 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -2.54 Total: 1.44 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.19 Total: -52.91 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.08 Total: -3.12 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.33 -7.75 -39.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947369043.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.284 kcal (2) G-P(sol) polarization free energy of solvation -31.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds