Wall clock time and date at job start Wed Apr 1 2020 00:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.70445 * 2 1 4 4 C 1.53197 * 109.58644 * 120.35996 * 2 1 3 5 5 C 1.53045 * 109.31201 * 65.14639 * 4 2 1 6 6 H 1.08994 * 109.44868 * 301.34951 * 5 4 2 7 7 N 1.46498 * 109.45478 * 181.38665 * 5 4 2 8 8 C 1.34786 * 119.99716 * 154.93491 * 7 5 4 9 9 O 1.21550 * 119.99667 * 359.97438 * 8 7 5 10 10 C 1.47837 * 119.99825 * 179.97438 * 8 7 5 11 11 C 1.40023 * 120.55606 * 179.97438 * 10 8 7 12 12 C 1.38356 * 118.28708 * 180.02562 * 11 10 8 13 13 C 1.38356 * 119.30537 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.46154 * 179.72684 * 13 12 11 15 15 F 1.39903 * 109.46698 * 299.99568 * 14 13 12 16 16 F 1.39899 * 109.47381 * 59.99012 * 14 13 12 17 17 N 1.31926 * 121.07837 * 359.97438 * 13 12 11 18 18 C 1.31696 * 121.87996 * 0.02562 * 17 13 12 19 19 C 1.53038 * 109.53761 * 61.36853 * 5 4 2 20 20 C 1.53187 * 109.31423 * 298.63495 * 19 5 4 21 21 N 1.46923 * 109.58565 * 239.64384 * 2 1 3 22 22 C 1.36940 * 120.62983 * 113.80064 * 21 2 1 23 23 H 1.08000 * 119.99847 * 27.69651 * 22 21 2 24 24 C 1.38819 * 119.99900 * 207.69298 * 22 21 2 25 25 N 1.31619 * 119.99950 * 17.36917 * 24 22 21 26 26 Si 1.86801 * 119.99738 * 197.36523 * 24 22 21 27 27 H 1.48498 * 109.47392 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46941 * 120.00511 * 26 24 22 29 29 H 1.48506 * 109.46922 * 240.00200 * 26 24 22 30 30 H 1.08995 * 109.47448 * 180.35090 * 1 2 3 31 31 H 1.09003 * 109.46988 * 300.35394 * 1 2 3 32 32 H 1.09002 * 109.47055 * 60.35150 * 1 2 3 33 33 H 1.09006 * 109.49099 * 305.19823 * 4 2 1 34 34 H 1.08992 * 109.49859 * 185.09948 * 4 2 1 35 35 H 0.97004 * 120.00427 * 334.93388 * 7 5 4 36 36 H 1.08002 * 120.85559 * 0.04240 * 11 10 8 37 37 H 1.08001 * 120.34971 * 180.02562 * 12 11 10 38 38 H 1.09000 * 109.47116 * 179.97438 * 14 13 12 39 39 H 1.07997 * 119.71706 * 179.97438 * 18 17 13 40 40 H 1.09007 * 109.49480 * 58.58012 * 19 5 4 41 41 H 1.08995 * 109.49490 * 178.64466 * 19 5 4 42 42 H 1.08997 * 109.59222 * 174.42007 * 20 19 5 43 43 H 1.09001 * 109.58605 * 294.70519 * 20 19 5 44 44 H 0.96996 * 119.99889 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7295 1.2454 5 6 1.6413 -2.2042 1.1700 6 1 0.5564 -2.2813 1.0992 7 7 2.1022 -2.8979 2.3753 8 6 1.4739 -4.0154 2.7914 9 8 0.5248 -4.4473 2.1670 10 6 1.9394 -4.7157 4.0074 11 6 1.2951 -5.8773 4.4505 12 6 1.7694 -6.4944 5.5943 13 6 2.8544 -5.9493 6.2576 14 6 3.3701 -6.6151 7.5073 15 9 2.3566 -6.6462 8.4712 16 9 3.7696 -7.9222 7.2085 17 7 3.4418 -4.8534 5.8167 18 6 3.0274 -4.2299 4.7333 19 6 2.2798 -2.8465 -0.0636 20 6 1.7691 -2.1411 -1.3238 21 7 2.0225 -0.6996 -1.1944 22 6 2.7044 -0.0209 -2.1690 23 1 3.2696 0.8640 -1.9160 24 6 2.6692 -0.4703 -3.4819 25 7 1.7364 -1.3172 -3.8628 26 14 3.9457 0.1269 -4.7080 27 1 4.8777 1.0665 -4.0343 28 1 4.7081 -1.0340 -5.2338 29 1 3.2664 0.8224 -5.8306 30 1 -0.3634 -1.0276 0.0063 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5084 -0.8931 33 1 1.6074 -0.2785 2.1368 34 1 3.1296 -0.6505 1.2913 35 1 2.8595 -2.5530 2.8738 36 1 0.4498 -6.2811 3.9131 37 1 1.2978 -7.3923 5.9655 38 1 4.2216 -6.0544 7.8928 39 1 3.5340 -3.3348 4.4038 40 1 3.3638 -2.7475 -0.0053 41 1 2.0125 -3.9024 -0.1034 42 1 2.2943 -2.5274 -2.1972 43 1 0.6990 -2.3177 -1.4331 44 1 1.7117 -1.6309 -4.7803 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947369043.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:00 Heat of formation + Delta-G solvation = -99.974509 kcal Electronic energy + Delta-G solvation = -29038.063424 eV Core-core repulsion = 24625.730902 eV Total energy + Delta-G solvation = -4412.332521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.10896 -48.10045 -41.90204 -40.61453 -39.23812 -36.14805 -34.48701 -33.99468 -33.37572 -32.38348 -31.27196 -28.81280 -28.01188 -26.18018 -25.04240 -24.49761 -23.66633 -23.06714 -21.74186 -20.25665 -19.36221 -18.82967 -18.75883 -18.34652 -18.20194 -17.60503 -16.93476 -16.52326 -16.23160 -16.14772 -15.75435 -15.50374 -15.32617 -15.15818 -14.87181 -14.75461 -14.46739 -14.45429 -14.34856 -14.23595 -14.12834 -13.87591 -13.56652 -13.15656 -12.91989 -12.66447 -12.55646 -12.38255 -12.28584 -12.04632 -11.97529 -11.78417 -11.49855 -11.45488 -11.20416 -11.03113 -10.75009 -10.58446 -10.54140 -10.05367 -8.67898 -7.85041 -5.29353 -0.78294 -0.03954 1.46808 1.49504 1.58845 1.59215 1.95445 2.17108 2.52086 2.52608 3.12100 3.23179 3.30792 3.47316 3.58209 3.62819 3.68118 3.82223 3.86800 3.92885 4.08756 4.11247 4.29235 4.39920 4.45598 4.53335 4.68126 4.72017 4.75817 4.82686 4.85968 4.91282 5.09594 5.13252 5.18135 5.19915 5.34958 5.45640 5.46275 5.56762 5.70196 5.77778 6.40215 6.42138 6.46525 7.09404 7.17050 7.89345 8.40792 9.21666 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.024537 B = 0.002141 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.841357 B =13074.982512 C =13324.445181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.159 3.841 3 H 0.071 0.929 4 C -0.119 4.119 5 C 0.161 3.839 6 H 0.068 0.932 7 N -0.700 5.700 8 C 0.559 3.441 9 O -0.572 6.572 10 C -0.171 4.171 11 C -0.022 4.022 12 C -0.139 4.139 13 C 0.060 3.940 14 C 0.327 3.673 15 F -0.198 7.198 16 F -0.198 7.198 17 N -0.466 5.466 18 C 0.144 3.856 19 C -0.133 4.133 20 C 0.184 3.816 21 N -0.599 5.599 22 C -0.253 4.253 23 H 0.073 0.927 24 C -0.054 4.054 25 N -0.937 5.937 26 Si 0.963 3.037 27 H -0.262 1.262 28 H -0.294 1.294 29 H -0.297 1.297 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.027 0.973 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.415 0.585 36 H 0.155 0.845 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.197 0.803 40 H 0.063 0.937 41 H 0.044 0.956 42 H 0.052 0.948 43 H -0.009 1.009 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.086 -7.335 25.067 26.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.053 3.947 3 H 0.089 0.911 4 C -0.158 4.158 5 C 0.057 3.943 6 H 0.086 0.914 7 N -0.351 5.351 8 C 0.345 3.655 9 O -0.452 6.452 10 C -0.176 4.176 11 C -0.048 4.048 12 C -0.158 4.158 13 C -0.078 4.078 14 C 0.273 3.727 15 F -0.179 7.179 16 F -0.180 7.180 17 N -0.175 5.175 18 C -0.015 4.015 19 C -0.173 4.173 20 C 0.057 3.943 21 N -0.322 5.322 22 C -0.384 4.384 23 H 0.091 0.909 24 C -0.249 4.249 25 N -0.583 5.583 26 Si 0.792 3.208 27 H -0.186 1.186 28 H -0.222 1.222 29 H -0.224 1.224 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.253 0.747 36 H 0.173 0.827 37 H 0.185 0.815 38 H 0.179 0.821 39 H 0.214 0.786 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.009 0.991 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.119 -7.360 24.958 26.345 hybrid contribution -0.393 -0.336 -1.791 1.864 sum 3.726 -7.696 23.167 24.695 Atomic orbital electron populations 1.22202 0.98273 1.00336 1.00566 1.20722 0.92134 0.95597 0.86288 0.91065 1.22155 1.02189 0.92514 0.98957 1.20803 0.98586 0.92173 0.82778 0.91438 1.45954 1.34738 1.26236 1.28144 1.18317 0.82368 0.80743 0.84026 1.90804 1.29659 1.66643 1.58121 1.21102 1.00161 0.98809 0.97541 1.21924 0.97543 0.91650 0.93726 1.22124 0.96617 1.01898 0.95189 1.22039 0.94458 0.93824 0.97471 1.20328 0.89371 0.79998 0.83037 1.93034 1.63769 1.96584 1.64496 1.93034 1.90921 1.40184 1.93833 1.67318 1.29155 1.07361 1.13641 1.23348 0.91343 0.98390 0.88439 1.22333 1.00493 0.98286 0.96199 1.20416 0.95503 0.83705 0.94679 1.44395 1.64099 1.03588 1.20072 1.19568 1.21521 1.09951 0.87320 0.90927 1.25791 0.99547 1.00856 0.98712 1.70207 1.33699 1.37662 1.16751 0.85264 0.79172 0.77408 0.78944 1.18641 1.22158 1.22399 0.94629 0.90635 0.95407 0.88732 0.90408 0.74710 0.82709 0.81549 0.82089 0.78648 0.91872 0.93741 0.92928 0.99111 0.94377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.59 9.03 71.98 0.65 -4.95 16 2 C 0.16 5.90 3.29 44.98 0.15 6.05 16 3 H 0.07 2.58 7.93 -2.39 -0.02 2.56 16 4 C -0.12 -3.28 5.02 30.67 0.15 -3.12 16 5 C 0.16 4.93 2.21 45.02 0.10 5.03 16 6 H 0.07 2.43 5.92 -2.39 -0.01 2.41 16 7 N -0.70 -15.96 5.03 -445.29 -2.24 -18.20 16 8 C 0.56 14.53 7.75 86.78 0.67 15.20 16 9 O -0.57 -20.15 16.08 -3.87 -0.06 -20.21 16 10 C -0.17 -3.35 5.89 -19.99 -0.12 -3.47 16 11 C -0.02 -0.40 9.72 22.73 0.22 -0.18 16 12 C -0.14 -2.09 9.60 22.33 0.21 -1.87 16 13 C 0.06 0.92 6.28 42.57 0.27 1.19 16 14 C 0.33 3.87 5.54 71.23 0.39 4.26 16 15 F -0.20 -2.81 17.25 44.97 0.78 -2.04 16 16 F -0.20 -2.90 17.25 44.97 0.78 -2.13 16 17 N -0.47 -7.41 10.23 -182.82 -1.87 -9.28 16 18 C 0.14 2.16 10.71 85.02 0.91 3.07 16 19 C -0.13 -5.03 5.65 30.67 0.17 -4.85 16 20 C 0.18 8.87 4.89 86.36 0.42 9.29 16 21 N -0.60 -28.43 2.70 -675.22 -1.82 -30.26 16 22 C -0.25 -13.35 9.59 84.03 0.81 -12.55 16 23 H 0.07 3.68 7.89 -2.91 -0.02 3.65 16 24 C -0.05 -2.97 4.91 84.86 0.42 -2.56 16 25 N -0.94 -55.62 11.19 21.65 0.24 -55.37 16 26 Si 0.96 44.35 29.59 68.60 2.03 46.38 16 27 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 28 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 29 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 30 H 0.03 1.37 5.73 -2.39 -0.01 1.36 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.41 6.14 6.67 -92.71 -0.62 5.52 16 36 H 0.16 2.84 7.74 -2.91 -0.02 2.81 16 37 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.16 1.04 8.10 -2.39 -0.02 1.02 16 39 H 0.20 1.67 6.42 -2.91 -0.02 1.65 16 40 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 41 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.05 2.92 6.04 -2.39 -0.01 2.90 16 43 H -0.01 -0.49 7.51 -2.39 -0.02 -0.51 16 44 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -71.04 365.87 3.69 -67.36 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.43 Total: 13.21 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 5.43 Total: 10.55 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -5.69 Total: -113.12 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.06 Total: -20.21 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 1.55 Total: -4.17 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -71.04 3.69 -67.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947369043.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.616 kcal (2) G-P(sol) polarization free energy of solvation -71.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds