Wall clock time and date at job start Wed Apr 1 2020 00:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.70231 * 2 1 4 4 C 1.53621 * 109.66606 * 120.59545 * 2 1 3 5 5 C 1.53041 * 109.24376 * 174.54604 * 4 2 1 6 6 H 1.08996 * 109.45783 * 58.52911 * 5 4 2 7 7 N 1.46502 * 109.46018 * 178.49205 * 5 4 2 8 8 C 1.34775 * 119.99682 * 205.06836 * 7 5 4 9 9 O 1.21561 * 120.00124 * 359.97438 * 8 7 5 10 10 C 1.47840 * 120.00164 * 179.97438 * 8 7 5 11 11 C 1.40019 * 120.56504 * 180.02562 * 10 8 7 12 12 C 1.38353 * 118.29420 * 179.97438 * 11 10 8 13 13 C 1.38355 * 119.30039 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.45982 * 180.02562 * 13 12 11 15 15 F 1.39893 * 109.47130 * 300.00074 * 14 13 12 16 16 F 1.39894 * 109.46981 * 60.00519 * 14 13 12 17 17 N 1.31928 * 121.07968 * 359.97438 * 13 12 11 18 18 C 1.31697 * 121.87781 * 359.77060 * 17 13 12 19 19 C 1.53042 * 109.53755 * 298.51130 * 5 4 2 20 20 C 1.53197 * 109.31056 * 61.36512 * 19 5 4 21 21 N 1.46924 * 108.77415 * 305.36136 * 20 19 5 22 22 C 1.36943 * 120.62995 * 233.58592 * 21 20 19 23 23 H 1.07999 * 119.99741 * 150.98933 * 22 21 20 24 24 C 1.38811 * 119.99970 * 330.98603 * 22 21 20 25 25 N 1.31620 * 120.00262 * 344.98836 * 24 22 21 26 26 Si 1.86799 * 119.99624 * 164.98484 * 24 22 21 27 27 H 1.48499 * 109.46917 * 180.02562 * 26 24 22 28 28 H 1.48495 * 109.47442 * 300.00072 * 26 24 22 29 29 H 1.48504 * 109.47236 * 60.00138 * 26 24 22 30 30 H 1.08997 * 109.47317 * 180.35312 * 1 2 3 31 31 H 1.09002 * 109.46620 * 300.35165 * 1 2 3 32 32 H 1.08999 * 109.47059 * 60.35252 * 1 2 3 33 33 H 1.09011 * 109.63268 * 54.55890 * 4 2 1 34 34 H 1.08992 * 109.43154 * 294.41829 * 4 2 1 35 35 H 0.96995 * 120.00029 * 25.07392 * 7 5 4 36 36 H 1.08006 * 120.85162 * 359.95186 * 11 10 8 37 37 H 1.08000 * 120.35286 * 180.02562 * 12 11 10 38 38 H 1.09002 * 109.47091 * 180.02562 * 14 13 12 39 39 H 1.08005 * 119.71457 * 180.24468 * 18 17 13 40 40 H 1.08998 * 109.49938 * 301.41676 * 19 5 4 41 41 H 1.09004 * 109.52569 * 181.32617 * 19 5 4 42 42 H 1.09003 * 109.58227 * 185.57834 * 20 19 5 43 43 H 1.08997 * 109.58750 * 65.15334 * 20 19 5 44 44 H 0.97000 * 120.00257 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7363 1.2452 5 6 3.5712 -0.8499 1.1675 6 1 4.0066 0.1470 1.0989 7 7 4.0727 -1.5196 2.3701 8 6 5.3364 -1.3021 2.7851 9 8 6.0602 -0.5507 2.1613 10 6 5.8424 -1.9774 3.9990 11 6 7.1530 -1.7596 4.4411 12 6 7.5774 -2.4154 5.5830 13 6 6.7016 -3.2569 6.2456 14 6 7.1600 -3.9725 7.4901 15 9 8.2551 -4.7870 7.1831 16 9 7.5339 -3.0333 8.4571 17 7 5.4715 -3.4423 5.8064 18 6 5.0196 -2.8371 4.7275 19 6 3.9615 -1.6628 -0.0690 20 6 3.4656 -0.9419 -1.3265 21 7 2.0225 -0.6995 -1.1945 22 6 1.1536 -1.1126 -2.1691 23 1 0.1371 -1.3711 -1.9119 24 6 1.5795 -1.1990 -3.4874 25 7 2.7005 -0.6163 -3.8565 26 14 0.5617 -2.1426 -4.7377 27 1 1.2287 -2.0855 -6.0632 28 1 0.4370 -3.5583 -4.3074 29 1 -0.7895 -1.5344 -4.8363 30 1 -0.3634 -1.0276 0.0063 31 1 -0.3633 0.5193 0.8869 32 1 -0.3633 0.5083 -0.8931 33 1 1.6096 -1.7338 1.2888 34 1 1.7689 -0.1772 2.1386 35 1 3.4953 -2.1195 2.8676 36 1 7.8157 -1.0970 3.9041 37 1 8.5815 -2.2713 5.9537 38 1 6.3470 -4.5876 7.8759 39 1 4.0049 -3.0113 4.4013 40 1 3.5060 -2.6515 -0.0130 41 1 5.0460 -1.7636 -0.1114 42 1 3.6531 -1.5637 -2.2020 43 1 3.9877 0.0090 -1.4325 44 1 2.9983 -0.6770 -4.7777 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947369044.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:05 Heat of formation + Delta-G solvation = -80.035437 kcal Electronic energy + Delta-G solvation = -28920.208553 eV Core-core repulsion = 24508.740654 eV Total energy + Delta-G solvation = -4411.467898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.51617 -47.50064 -41.05409 -39.46471 -37.68157 -34.81372 -33.31113 -32.85061 -32.32699 -31.26029 -29.60723 -27.58908 -26.39783 -24.89278 -24.33113 -23.47270 -22.07788 -21.27841 -20.27884 -19.45249 -18.50608 -18.11662 -17.75351 -17.69989 -16.69283 -16.35228 -15.59646 -15.43341 -15.15907 -15.09270 -14.61650 -14.48100 -14.06882 -13.91569 -13.86080 -13.76704 -13.65819 -13.55429 -13.32217 -12.95901 -12.82855 -12.72908 -11.80057 -11.64372 -11.28068 -11.16427 -10.97973 -10.95301 -10.68600 -10.51041 -10.45654 -10.37808 -10.20379 -10.09206 -9.91980 -9.82492 -9.78814 -9.44749 -8.85185 -8.45898 -6.68019 -5.79643 -3.24140 -0.02048 0.65571 2.50996 2.76573 3.02965 3.35112 3.36497 3.42972 3.43049 3.65007 3.84978 4.16693 4.27816 4.45514 4.46678 4.50174 4.55581 4.74196 4.99976 5.19055 5.31491 5.37671 5.41807 5.50766 5.55975 5.69522 5.88851 5.92226 6.09309 6.14182 6.26835 6.31473 6.37051 6.43995 6.57284 6.72997 6.77930 6.98136 7.05329 7.12167 7.33469 7.46928 7.66384 7.79532 8.11312 8.44207 9.19603 9.83026 10.39648 11.28857 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.024692 B = 0.002106 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.717763 B =13290.866883 C =13466.771059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.028 0.972 4 C -0.135 4.135 5 C 0.150 3.850 6 H 0.085 0.915 7 N -0.714 5.714 8 C 0.556 3.444 9 O -0.527 6.527 10 C -0.157 4.157 11 C -0.017 4.017 12 C -0.137 4.137 13 C 0.063 3.937 14 C 0.324 3.676 15 F -0.192 7.192 16 F -0.192 7.192 17 N -0.460 5.460 18 C 0.135 3.865 19 C -0.147 4.147 20 C 0.174 3.826 21 N -0.587 5.587 22 C -0.252 4.252 23 H 0.070 0.930 24 C 0.003 3.997 25 N -0.903 5.903 26 Si 0.902 3.098 27 H -0.291 1.291 28 H -0.284 1.284 29 H -0.283 1.283 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.394 0.606 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.134 0.866 39 H 0.169 0.831 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.091 0.909 43 H 0.020 0.980 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.341 -5.268 21.913 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.175 4.175 5 C 0.047 3.953 6 H 0.103 0.897 7 N -0.364 5.364 8 C 0.341 3.659 9 O -0.404 6.404 10 C -0.162 4.162 11 C -0.044 4.044 12 C -0.157 4.157 13 C -0.076 4.076 14 C 0.270 3.730 15 F -0.173 7.173 16 F -0.173 7.173 17 N -0.168 5.168 18 C -0.024 4.024 19 C -0.187 4.187 20 C 0.048 3.952 21 N -0.311 5.311 22 C -0.382 4.382 23 H 0.088 0.912 24 C -0.196 4.196 25 N -0.547 5.547 26 Si 0.731 3.269 27 H -0.217 1.217 28 H -0.211 1.211 29 H -0.209 1.209 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.229 0.771 36 H 0.175 0.825 37 H 0.167 0.833 38 H 0.151 0.849 39 H 0.186 0.814 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.109 0.891 43 H 0.039 0.961 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.395 -5.262 21.733 23.257 hybrid contribution -0.016 -0.231 -0.904 0.933 sum 6.379 -5.493 20.829 22.466 Atomic orbital electron populations 1.21789 0.95676 1.01416 1.00418 1.20446 0.93117 0.93518 0.86569 0.95454 1.22475 0.93364 1.01778 0.99856 1.21153 0.94448 0.96823 0.82857 0.89741 1.46290 1.12698 1.47945 1.29461 1.17937 0.82544 0.81781 0.83687 1.90822 1.56338 1.36743 1.56451 1.21341 0.96298 1.00526 0.98074 1.21820 0.94398 0.94857 0.93311 1.21926 1.01468 0.96585 0.95760 1.21675 0.91514 0.97255 0.97122 1.20107 0.86362 0.82831 0.83714 1.93043 1.57685 1.72927 1.93615 1.93041 1.92854 1.67236 1.64167 1.67228 1.13920 1.22094 1.13604 1.22980 0.99654 0.90597 0.89174 1.22591 0.99786 0.99673 0.96692 1.20765 0.83196 0.97339 0.93892 1.44187 1.02932 1.64885 1.19076 1.19125 0.94937 1.37928 0.86187 0.91234 1.25107 0.97841 0.99647 0.97021 1.69999 1.23436 1.44294 1.16984 0.86389 0.79635 0.80108 0.80719 1.21689 1.21090 1.20899 0.92753 0.94280 0.91794 0.91652 0.92593 0.77096 0.82488 0.83344 0.84861 0.81363 0.92542 0.92845 0.89050 0.96141 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 7.95 37.16 0.30 -2.09 16 2 C 0.17 3.32 3.51 -67.37 -0.24 3.09 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.09 4.86 -26.39 -0.13 -2.22 16 5 C 0.15 2.43 2.41 -67.89 -0.16 2.27 16 6 H 0.08 1.55 7.57 -51.93 -0.39 1.16 16 7 N -0.71 -9.06 5.03 -54.71 -0.28 -9.33 16 8 C 0.56 7.60 7.75 -12.33 -0.10 7.51 16 9 O -0.53 -9.25 16.08 5.31 0.09 -9.16 16 10 C -0.16 -1.69 5.89 -104.82 -0.62 -2.31 16 11 C -0.02 -0.17 9.72 -38.87 -0.38 -0.55 16 12 C -0.14 -1.17 9.60 -39.50 -0.38 -1.55 16 13 C 0.06 0.56 6.28 -82.51 -0.52 0.04 16 14 C 0.32 2.35 5.54 36.01 0.20 2.55 16 15 F -0.19 -1.62 17.25 2.25 0.04 -1.58 16 16 F -0.19 -1.59 17.25 2.25 0.04 -1.55 16 17 N -0.46 -4.37 10.23 -9.13 -0.09 -4.47 16 18 C 0.14 1.23 10.71 -17.13 -0.18 1.04 16 19 C -0.15 -2.78 5.65 -26.61 -0.15 -2.93 16 20 C 0.17 4.08 5.28 -3.71 -0.02 4.06 16 21 N -0.59 -13.90 2.99 -164.52 -0.49 -14.39 16 22 C -0.25 -6.54 8.59 -15.06 -0.13 -6.67 16 23 H 0.07 1.75 6.22 -52.49 -0.33 1.42 16 24 C 0.00 0.07 4.96 -17.43 -0.09 -0.02 16 25 N -0.90 -25.74 11.14 55.49 0.62 -25.13 16 26 Si 0.90 21.21 29.58 -169.99 -5.03 16.19 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 30 H 0.05 0.95 7.44 -51.93 -0.39 0.57 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 1.24 7.62 -51.93 -0.40 0.84 16 33 H 0.06 1.00 8.14 -51.92 -0.42 0.57 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.39 3.73 6.67 -40.82 -0.27 3.46 16 36 H 0.16 1.45 7.74 -52.48 -0.41 1.05 16 37 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 38 H 0.13 0.65 8.10 -51.93 -0.42 0.23 16 39 H 0.17 1.08 6.42 -52.48 -0.34 0.75 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.09 2.41 6.06 -51.93 -0.31 2.09 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 366.79 15.07 5.53 5.53 Total: -1.00 -31.33 366.79 -7.94 -39.27 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.77 Total: 2.38 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -2.59 Total: 2.23 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.24 Total: -53.31 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.08 Total: -3.13 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.33 -7.94 -39.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947369044.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.765 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds