Wall clock time and date at job start Wed Apr 1 2020 00:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.70231 * 2 1 4 4 C 1.53621 * 109.66606 * 120.59545 * 2 1 3 5 5 C 1.53041 * 109.24376 * 174.54604 * 4 2 1 6 6 H 1.08996 * 109.45783 * 58.52911 * 5 4 2 7 7 N 1.46502 * 109.46018 * 178.49205 * 5 4 2 8 8 C 1.34775 * 119.99682 * 205.06836 * 7 5 4 9 9 O 1.21561 * 120.00124 * 359.97438 * 8 7 5 10 10 C 1.47840 * 120.00164 * 179.97438 * 8 7 5 11 11 C 1.40019 * 120.56504 * 180.02562 * 10 8 7 12 12 C 1.38353 * 118.29420 * 179.97438 * 11 10 8 13 13 C 1.38355 * 119.30039 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.45982 * 180.02562 * 13 12 11 15 15 F 1.39893 * 109.47130 * 300.00074 * 14 13 12 16 16 F 1.39894 * 109.46981 * 60.00519 * 14 13 12 17 17 N 1.31928 * 121.07968 * 359.97438 * 13 12 11 18 18 C 1.31697 * 121.87781 * 359.77060 * 17 13 12 19 19 C 1.53042 * 109.53755 * 298.51130 * 5 4 2 20 20 C 1.53197 * 109.31056 * 61.36512 * 19 5 4 21 21 N 1.46924 * 108.77415 * 305.36136 * 20 19 5 22 22 C 1.36943 * 120.62995 * 233.58592 * 21 20 19 23 23 H 1.07999 * 119.99741 * 150.98933 * 22 21 20 24 24 C 1.38811 * 119.99970 * 330.98603 * 22 21 20 25 25 N 1.31620 * 120.00262 * 344.98836 * 24 22 21 26 26 Si 1.86799 * 119.99624 * 164.98484 * 24 22 21 27 27 H 1.48499 * 109.46917 * 180.02562 * 26 24 22 28 28 H 1.48495 * 109.47442 * 300.00072 * 26 24 22 29 29 H 1.48504 * 109.47236 * 60.00138 * 26 24 22 30 30 H 1.08997 * 109.47317 * 180.35312 * 1 2 3 31 31 H 1.09002 * 109.46620 * 300.35165 * 1 2 3 32 32 H 1.08999 * 109.47059 * 60.35252 * 1 2 3 33 33 H 1.09011 * 109.63268 * 54.55890 * 4 2 1 34 34 H 1.08992 * 109.43154 * 294.41829 * 4 2 1 35 35 H 0.96995 * 120.00029 * 25.07392 * 7 5 4 36 36 H 1.08006 * 120.85162 * 359.95186 * 11 10 8 37 37 H 1.08000 * 120.35286 * 180.02562 * 12 11 10 38 38 H 1.09002 * 109.47091 * 180.02562 * 14 13 12 39 39 H 1.08005 * 119.71457 * 180.24468 * 18 17 13 40 40 H 1.08998 * 109.49938 * 301.41676 * 19 5 4 41 41 H 1.09004 * 109.52569 * 181.32617 * 19 5 4 42 42 H 1.09003 * 109.58227 * 185.57834 * 20 19 5 43 43 H 1.08997 * 109.58750 * 65.15334 * 20 19 5 44 44 H 0.97000 * 120.00257 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7363 1.2452 5 6 3.5712 -0.8499 1.1675 6 1 4.0066 0.1470 1.0989 7 7 4.0727 -1.5196 2.3701 8 6 5.3364 -1.3021 2.7851 9 8 6.0602 -0.5507 2.1613 10 6 5.8424 -1.9774 3.9990 11 6 7.1530 -1.7596 4.4411 12 6 7.5774 -2.4154 5.5830 13 6 6.7016 -3.2569 6.2456 14 6 7.1600 -3.9725 7.4901 15 9 8.2551 -4.7870 7.1831 16 9 7.5339 -3.0333 8.4571 17 7 5.4715 -3.4423 5.8064 18 6 5.0196 -2.8371 4.7275 19 6 3.9615 -1.6628 -0.0690 20 6 3.4656 -0.9419 -1.3265 21 7 2.0225 -0.6995 -1.1945 22 6 1.1536 -1.1126 -2.1691 23 1 0.1371 -1.3711 -1.9119 24 6 1.5795 -1.1990 -3.4874 25 7 2.7005 -0.6163 -3.8565 26 14 0.5617 -2.1426 -4.7377 27 1 1.2287 -2.0855 -6.0632 28 1 0.4370 -3.5583 -4.3074 29 1 -0.7895 -1.5344 -4.8363 30 1 -0.3634 -1.0276 0.0063 31 1 -0.3633 0.5193 0.8869 32 1 -0.3633 0.5083 -0.8931 33 1 1.6096 -1.7338 1.2888 34 1 1.7689 -0.1772 2.1386 35 1 3.4953 -2.1195 2.8676 36 1 7.8157 -1.0970 3.9041 37 1 8.5815 -2.2713 5.9537 38 1 6.3470 -4.5876 7.8759 39 1 4.0049 -3.0113 4.4013 40 1 3.5060 -2.6515 -0.0130 41 1 5.0460 -1.7636 -0.1114 42 1 3.6531 -1.5637 -2.2020 43 1 3.9877 0.0090 -1.4325 44 1 2.9983 -0.6770 -4.7777 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947369044.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:04 Heat of formation + Delta-G solvation = -99.819192 kcal Electronic energy + Delta-G solvation = -28921.066441 eV Core-core repulsion = 24508.740654 eV Total energy + Delta-G solvation = -4412.325786 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.11174 -48.10318 -41.90139 -40.56791 -39.17558 -36.23406 -34.37787 -34.01878 -33.50800 -32.70688 -31.21794 -28.50454 -27.80205 -26.61572 -25.04581 -24.45299 -23.60571 -22.51811 -21.57587 -21.00454 -19.37253 -18.76395 -18.60714 -18.34835 -18.15451 -17.52971 -17.06318 -16.51647 -16.24478 -16.12801 -15.76981 -15.62479 -15.36537 -15.17326 -14.90375 -14.79274 -14.60427 -14.46910 -14.40792 -14.33403 -14.25112 -13.57091 -13.31916 -12.93337 -12.71708 -12.67550 -12.60333 -12.38784 -12.34602 -12.11619 -11.85819 -11.71499 -11.55147 -11.51185 -11.20909 -11.14040 -10.75479 -10.58059 -10.52722 -10.07636 -8.63543 -7.82368 -5.28851 -0.78827 -0.04379 1.48650 1.50659 1.56828 1.57981 1.93568 2.16700 2.51457 2.53880 3.11946 3.22777 3.33621 3.46469 3.57828 3.60892 3.67569 3.82370 3.87811 3.92813 4.06662 4.10876 4.26549 4.39149 4.40696 4.62144 4.66488 4.72482 4.76988 4.80567 4.86291 4.97396 5.08091 5.09650 5.17411 5.19461 5.40229 5.44719 5.54554 5.58004 5.73227 5.74680 6.39451 6.44411 6.45691 7.08185 7.18658 7.90762 8.42914 9.24621 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.024692 B = 0.002106 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.717763 B =13290.866883 C =13466.771059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.158 3.842 3 H 0.012 0.988 4 C -0.119 4.119 5 C 0.162 3.838 6 H 0.060 0.940 7 N -0.699 5.699 8 C 0.559 3.441 9 O -0.573 6.573 10 C -0.171 4.171 11 C -0.022 4.022 12 C -0.138 4.138 13 C 0.060 3.940 14 C 0.327 3.673 15 F -0.198 7.198 16 F -0.198 7.198 17 N -0.466 5.466 18 C 0.144 3.856 19 C -0.131 4.131 20 C 0.182 3.818 21 N -0.603 5.603 22 C -0.247 4.247 23 H 0.081 0.919 24 C -0.058 4.058 25 N -0.942 5.942 26 Si 0.963 3.037 27 H -0.302 1.302 28 H -0.277 1.277 29 H -0.274 1.274 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.415 0.585 36 H 0.155 0.845 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.197 0.803 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.056 0.944 43 H -0.013 1.013 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.804 -6.837 24.998 26.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.052 3.948 3 H 0.029 0.971 4 C -0.158 4.158 5 C 0.057 3.943 6 H 0.078 0.922 7 N -0.350 5.350 8 C 0.345 3.655 9 O -0.453 6.453 10 C -0.176 4.176 11 C -0.048 4.048 12 C -0.158 4.158 13 C -0.078 4.078 14 C 0.273 3.727 15 F -0.180 7.180 16 F -0.179 7.179 17 N -0.175 5.175 18 C -0.015 4.015 19 C -0.171 4.171 20 C 0.055 3.945 21 N -0.327 5.327 22 C -0.377 4.377 23 H 0.099 0.901 24 C -0.253 4.253 25 N -0.589 5.589 26 Si 0.792 3.208 27 H -0.228 1.228 28 H -0.203 1.203 29 H -0.200 1.200 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.253 0.747 36 H 0.173 0.827 37 H 0.185 0.815 38 H 0.179 0.821 39 H 0.214 0.786 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.005 0.995 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.819 -6.860 24.887 26.261 hybrid contribution 0.510 0.306 -1.778 1.875 sum 5.328 -6.554 23.108 24.604 Atomic orbital electron populations 1.21710 0.93853 1.01780 1.01113 1.20745 0.94716 0.92873 0.86477 0.97074 1.22276 0.92075 1.02514 0.98932 1.20740 0.95204 0.95306 0.83019 0.92168 1.45929 1.12868 1.47901 1.28283 1.18331 0.82141 0.80967 0.84021 1.90809 1.57515 1.38859 1.58101 1.21093 0.97097 1.01910 0.97520 1.21922 0.94265 0.94919 0.93735 1.22124 1.02387 0.96141 0.95161 1.22045 0.91428 0.96836 0.97465 1.20326 0.86704 0.82735 0.82960 1.93033 1.58220 1.73054 1.93661 1.93032 1.92955 1.67610 1.64276 1.67321 1.14150 1.22277 1.13704 1.23349 1.00416 0.89278 0.88456 1.22320 0.99063 0.99724 0.96017 1.20461 0.83637 0.95463 0.94892 1.44450 1.02550 1.65618 1.20065 1.19520 0.95459 1.36146 0.86577 0.90140 1.25871 0.99103 1.01230 0.99071 1.70184 1.25454 1.46535 1.16692 0.85397 0.78327 0.79106 0.77967 1.22833 1.20318 1.19974 0.92476 0.90392 0.94309 0.90192 0.88952 0.74655 0.82721 0.81528 0.82079 0.78639 0.91753 0.93679 0.92593 0.99524 0.94476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 7.95 71.98 0.57 -3.59 16 2 C 0.16 5.97 3.51 45.12 0.16 6.13 16 3 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 4 C -0.12 -3.33 4.86 30.82 0.15 -3.18 16 5 C 0.16 5.06 2.41 45.02 0.11 5.17 16 6 H 0.06 2.23 7.57 -2.39 -0.02 2.21 16 7 N -0.70 -16.15 5.03 -445.28 -2.24 -18.39 16 8 C 0.56 14.69 7.75 86.79 0.67 15.36 16 9 O -0.57 -20.40 16.08 -3.91 -0.06 -20.46 16 10 C -0.17 -3.38 5.89 -19.99 -0.12 -3.49 16 11 C -0.02 -0.40 9.72 22.73 0.22 -0.18 16 12 C -0.14 -2.10 9.60 22.32 0.21 -1.88 16 13 C 0.06 0.92 6.28 42.57 0.27 1.19 16 14 C 0.33 3.87 5.54 71.24 0.39 4.27 16 15 F -0.20 -2.91 17.25 44.97 0.78 -2.13 16 16 F -0.20 -2.81 17.25 44.97 0.78 -2.04 16 17 N -0.47 -7.43 10.23 -182.81 -1.87 -9.30 16 18 C 0.14 2.18 10.71 85.02 0.91 3.09 16 19 C -0.13 -5.00 5.65 30.67 0.17 -4.82 16 20 C 0.18 8.91 5.28 86.36 0.46 9.37 16 21 N -0.60 -28.87 2.99 -674.41 -2.01 -30.88 16 22 C -0.25 -12.86 8.59 84.03 0.72 -12.14 16 23 H 0.08 3.96 6.22 -2.91 -0.02 3.94 16 24 C -0.06 -3.21 4.96 84.86 0.42 -2.79 16 25 N -0.94 -56.21 11.14 21.65 0.24 -55.97 16 26 Si 0.96 44.32 29.58 68.60 2.03 46.35 16 27 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 28 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 29 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 30 H 0.06 1.83 7.44 -2.39 -0.02 1.82 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.04 1.44 7.62 -2.39 -0.02 1.43 16 33 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 35 H 0.42 6.23 6.67 -92.71 -0.62 5.61 16 36 H 0.16 2.86 7.74 -2.91 -0.02 2.84 16 37 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.16 1.04 8.10 -2.39 -0.02 1.02 16 39 H 0.20 1.68 6.42 -2.91 -0.02 1.66 16 40 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 42 H 0.06 3.12 6.06 -2.39 -0.01 3.10 16 43 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 44 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -71.41 366.79 3.38 -68.03 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.43 Total: 12.31 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 5.32 Total: 12.50 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -5.88 Total: -114.54 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.06 Total: -20.46 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 1.55 Total: -4.17 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -71.41 3.38 -68.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947369044.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.794 kcal (2) G-P(sol) polarization free energy of solvation -71.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds