Wall clock time and date at job start Wed Apr 1 2020 00:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.69694 * 2 1 4 4 C 1.53185 * 109.58781 * 239.64362 * 2 1 3 5 5 C 1.53043 * 109.31239 * 294.84783 * 4 2 1 6 6 H 1.08994 * 109.45958 * 58.64259 * 5 4 2 7 7 N 1.46504 * 109.46065 * 178.61373 * 5 4 2 8 8 C 1.34773 * 119.99944 * 205.02798 * 7 5 4 9 9 O 1.21552 * 120.00256 * 359.97438 * 8 7 5 10 10 C 1.47846 * 119.99634 * 180.02562 * 8 7 5 11 11 C 1.40027 * 120.55719 * 179.97438 * 10 8 7 12 12 C 1.38348 * 118.29010 * 179.97438 * 11 10 8 13 13 C 1.38358 * 119.30187 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.46162 * 179.97438 * 13 12 11 15 15 F 1.39896 * 109.47489 * 210.00038 * 14 13 12 16 16 F 1.39908 * 109.47176 * 330.00164 * 14 13 12 17 17 N 1.31924 * 121.08247 * 0.02562 * 13 12 11 18 18 C 1.31699 * 121.87760 * 359.95476 * 17 13 12 19 19 C 1.53043 * 109.52593 * 298.62421 * 5 4 2 20 20 C 1.53193 * 109.30855 * 61.38930 * 19 5 4 21 21 N 1.46926 * 108.76548 * 305.34080 * 20 19 5 22 22 C 1.36935 * 120.63267 * 233.64394 * 21 20 19 23 23 H 1.07995 * 120.00124 * 151.80538 * 22 21 20 24 24 C 1.38809 * 119.99883 * 331.80176 * 22 21 20 25 25 N 1.31625 * 119.99958 * 343.09634 * 24 22 21 26 26 Si 1.86803 * 120.00225 * 163.09397 * 24 22 21 27 27 H 1.48496 * 109.46930 * 60.00103 * 26 24 22 28 28 H 1.48506 * 109.47065 * 180.02562 * 26 24 22 29 29 H 1.48492 * 109.47005 * 300.00155 * 26 24 22 30 30 H 1.09004 * 109.46609 * 180.35918 * 1 2 3 31 31 H 1.09001 * 109.46988 * 300.35169 * 1 2 3 32 32 H 1.08996 * 109.47400 * 60.35503 * 1 2 3 33 33 H 1.09004 * 109.49879 * 174.89401 * 4 2 1 34 34 H 1.09003 * 109.50069 * 54.79303 * 4 2 1 35 35 H 0.97000 * 119.99964 * 25.02391 * 7 5 4 36 36 H 1.07998 * 120.85565 * 0.02562 * 11 10 8 37 37 H 1.07996 * 120.35553 * 179.73037 * 12 11 10 38 38 H 1.09003 * 109.46999 * 89.99463 * 14 13 12 39 39 H 1.08001 * 119.71792 * 180.02562 * 18 17 13 40 40 H 1.08998 * 109.49451 * 181.32713 * 19 5 4 41 41 H 1.08996 * 109.49756 * 301.42451 * 19 5 4 42 42 H 1.08996 * 109.58048 * 185.56610 * 20 19 5 43 43 H 1.08995 * 109.71959 * 65.20000 * 20 19 5 44 44 H 0.97003 * 119.99567 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 6 1.6415 -2.2041 -1.1700 6 1 0.5566 -2.2815 -1.0990 7 7 2.1024 -2.8978 -2.3753 8 6 1.4747 -4.0157 -2.7910 9 8 0.5266 -4.4487 -2.1656 10 6 1.9403 -4.7161 -4.0069 11 6 1.2972 -5.8787 -4.4491 12 6 1.7715 -6.4958 -5.5929 13 6 2.8559 -5.9501 -6.2566 14 6 3.3759 -6.6197 -7.5026 15 9 4.7508 -6.3882 -7.6173 16 9 3.1396 -7.9965 -7.4254 17 7 3.4428 -4.8538 -5.8162 18 6 3.0281 -4.2301 -4.7329 19 6 2.2804 -2.8462 0.0636 20 6 1.7692 -2.1410 1.3238 21 7 2.0225 -0.6995 1.1945 22 6 2.7052 -0.0210 2.1685 23 1 3.2770 0.8591 1.9139 24 6 2.6622 -0.4643 3.4832 25 7 1.7279 -1.3104 3.8622 26 14 3.9302 0.1399 4.7147 27 1 3.8420 1.6177 4.8313 28 1 3.6677 -0.4782 6.0392 29 1 5.2893 -0.2398 4.2524 30 1 -0.3633 -1.0277 0.0064 31 1 -0.3633 0.5193 0.8868 32 1 -0.3634 0.5083 -0.8931 33 1 3.1298 -0.6503 -1.2913 34 1 1.6074 -0.2785 -2.1368 35 1 2.8592 -2.5525 -2.8741 36 1 0.4522 -6.2829 -3.9115 37 1 1.3034 -7.3967 -5.9611 38 1 2.8647 -6.2117 -8.3746 39 1 3.5344 -3.3346 -4.4038 40 1 2.0129 -3.9020 0.1038 41 1 3.3642 -2.7469 0.0052 42 1 2.2945 -2.5274 2.1971 43 1 0.6990 -2.3154 1.4343 44 1 1.6976 -1.6199 4.7811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947369045.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:08 Heat of formation + Delta-G solvation = -79.493222 kcal Electronic energy + Delta-G solvation = -29064.247540 eV Core-core repulsion = 24652.803154 eV Total energy + Delta-G solvation = -4411.444386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.44747 -47.44893 -41.03017 -39.48694 -37.77057 -34.71476 -33.23874 -32.89620 -32.34860 -30.81817 -29.64148 -27.64583 -26.82320 -24.47140 -24.29909 -23.40447 -22.03530 -21.75193 -20.61222 -18.91569 -18.31189 -18.00298 -17.91979 -17.58521 -16.77780 -16.55467 -15.67089 -15.50082 -15.12398 -14.88680 -14.49360 -14.25595 -14.16652 -13.85728 -13.79004 -13.76614 -13.60837 -13.46028 -13.10961 -13.03750 -12.66464 -12.53559 -12.26034 -11.80487 -11.45366 -11.11199 -10.98552 -10.84309 -10.66973 -10.45494 -10.43119 -10.39532 -10.23988 -10.07024 -9.83095 -9.76948 -9.73694 -9.42049 -8.84273 -8.44653 -6.71745 -5.81025 -3.24137 0.01279 0.67992 2.52509 2.85369 3.06170 3.36987 3.38034 3.43313 3.43814 3.58368 3.76913 4.22054 4.29688 4.37312 4.46556 4.52674 4.62420 4.74605 5.01896 5.20391 5.33414 5.36598 5.43932 5.53002 5.58428 5.71915 5.91115 5.95722 6.01501 6.18465 6.23605 6.34275 6.40172 6.53441 6.59229 6.73476 6.78805 6.90073 7.11613 7.17917 7.34003 7.48486 7.66373 7.77534 8.13130 8.43164 9.18739 9.81940 10.38482 11.27282 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.022604 B = 0.002173 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.418508 B =12882.230956 C =13140.996097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.170 3.830 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.149 3.851 6 H 0.089 0.911 7 N -0.715 5.715 8 C 0.556 3.444 9 O -0.528 6.528 10 C -0.162 4.162 11 C -0.016 4.016 12 C -0.146 4.146 13 C 0.063 3.937 14 C 0.328 3.672 15 F -0.185 7.185 16 F -0.193 7.193 17 N -0.457 5.457 18 C 0.137 3.863 19 C -0.148 4.148 20 C 0.174 3.826 21 N -0.585 5.585 22 C -0.255 4.255 23 H 0.065 0.935 24 C 0.004 3.996 25 N -0.900 5.900 26 Si 0.902 3.098 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.284 1.284 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.394 0.606 36 H 0.157 0.843 37 H 0.152 0.848 38 H 0.132 0.868 39 H 0.168 0.832 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.089 0.911 43 H 0.022 0.978 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.436 -8.404 -22.795 24.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.085 0.915 4 C -0.173 4.173 5 C 0.046 3.954 6 H 0.106 0.894 7 N -0.364 5.364 8 C 0.341 3.659 9 O -0.405 6.405 10 C -0.167 4.167 11 C -0.043 4.043 12 C -0.166 4.166 13 C -0.076 4.076 14 C 0.273 3.727 15 F -0.166 7.166 16 F -0.174 7.174 17 N -0.165 5.165 18 C -0.022 4.022 19 C -0.188 4.188 20 C 0.047 3.953 21 N -0.306 5.306 22 C -0.384 4.384 23 H 0.083 0.917 24 C -0.195 4.195 25 N -0.544 5.544 26 Si 0.732 3.268 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.211 1.211 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.229 0.771 36 H 0.175 0.825 37 H 0.170 0.830 38 H 0.149 0.851 39 H 0.185 0.815 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.040 0.960 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.471 -8.454 -22.586 24.122 hybrid contribution 0.378 -0.020 0.964 1.035 sum 0.849 -8.475 -21.623 23.240 Atomic orbital electron populations 1.22308 0.98673 1.01149 1.00098 1.20437 0.91797 0.95144 0.86439 0.91537 1.22324 1.01304 0.93907 0.99793 1.21210 1.00013 0.91424 0.82738 0.89352 1.46304 1.34265 1.26608 1.29273 1.17940 0.83199 0.81054 0.83715 1.90814 1.27688 1.65483 1.56506 1.21345 0.98848 0.98300 0.98184 1.21800 0.97504 0.91654 0.93323 1.21869 0.97162 1.01480 0.96054 1.21857 0.94538 0.94133 0.97060 1.20093 0.79042 0.76994 0.96576 1.93050 1.32390 1.94141 1.96994 1.93031 1.94249 1.32702 1.97467 1.67293 1.28535 1.07252 1.13454 1.23015 0.92099 0.97959 0.89166 1.22586 1.00262 0.99184 0.96751 1.20741 0.97797 0.82926 0.93793 1.44155 1.63749 1.03414 1.19284 1.19110 1.21953 1.10709 0.86653 0.91694 1.25062 0.97628 0.99936 0.96842 1.70023 1.31656 1.35745 1.16989 0.86382 0.81563 0.78365 0.80503 1.20887 1.21669 1.21058 0.93198 0.92566 0.94480 0.91737 0.92469 0.77109 0.82529 0.83033 0.85054 0.81472 0.92875 0.92536 0.89268 0.95974 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 9.02 37.16 0.34 -2.67 16 2 C 0.17 3.29 3.29 -67.60 -0.22 3.07 16 3 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 4 C -0.13 -2.07 5.02 -26.61 -0.13 -2.21 16 5 C 0.15 2.41 2.21 -67.88 -0.15 2.26 16 6 H 0.09 1.61 5.94 -51.93 -0.31 1.30 16 7 N -0.71 -9.17 5.03 -54.71 -0.28 -9.44 16 8 C 0.56 7.63 7.75 -12.33 -0.10 7.54 16 9 O -0.53 -9.24 16.08 5.32 0.09 -9.15 16 10 C -0.16 -1.74 5.89 -104.82 -0.62 -2.36 16 11 C -0.02 -0.15 9.72 -38.87 -0.38 -0.53 16 12 C -0.15 -1.13 9.42 -39.50 -0.37 -1.51 16 13 C 0.06 0.55 6.58 -82.51 -0.54 0.01 16 14 C 0.33 2.28 5.72 36.01 0.21 2.49 16 15 F -0.18 -1.79 17.05 2.25 0.04 -1.75 16 16 F -0.19 -1.48 16.45 2.25 0.04 -1.44 16 17 N -0.46 -4.66 9.94 -9.13 -0.09 -4.75 16 18 C 0.14 1.30 10.71 -17.13 -0.18 1.11 16 19 C -0.15 -2.81 5.65 -26.61 -0.15 -2.96 16 20 C 0.17 4.05 4.89 -3.71 -0.02 4.04 16 21 N -0.58 -13.83 2.70 -164.78 -0.44 -14.28 16 22 C -0.25 -6.72 9.58 -15.06 -0.14 -6.86 16 23 H 0.07 1.68 7.88 -52.49 -0.41 1.26 16 24 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 25 N -0.90 -25.68 11.20 55.49 0.62 -25.06 16 26 Si 0.90 21.31 29.59 -169.99 -5.03 16.28 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 30 H 0.05 0.96 5.72 -51.93 -0.30 0.66 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.39 3.83 6.67 -40.82 -0.27 3.55 16 36 H 0.16 1.40 7.74 -52.49 -0.41 0.99 16 37 H 0.15 0.80 7.58 -52.49 -0.40 0.40 16 38 H 0.13 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.17 1.17 6.42 -52.49 -0.34 0.84 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 43 H 0.02 0.55 7.49 -51.93 -0.39 0.17 16 44 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -32.07 364.45 -7.76 -39.83 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.64 Total: 2.82 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -2.55 Total: 1.45 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.19 Total: -53.53 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.08 Total: -3.19 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.07 -7.76 -39.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947369045.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.666 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds