Wall clock time and date at job start Wed Apr 1 2020 00:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.69694 * 2 1 4 4 C 1.53185 * 109.58781 * 239.64362 * 2 1 3 5 5 C 1.53043 * 109.31239 * 294.84783 * 4 2 1 6 6 H 1.08994 * 109.45958 * 58.64259 * 5 4 2 7 7 N 1.46504 * 109.46065 * 178.61373 * 5 4 2 8 8 C 1.34773 * 119.99944 * 205.02798 * 7 5 4 9 9 O 1.21552 * 120.00256 * 359.97438 * 8 7 5 10 10 C 1.47846 * 119.99634 * 180.02562 * 8 7 5 11 11 C 1.40027 * 120.55719 * 179.97438 * 10 8 7 12 12 C 1.38348 * 118.29010 * 179.97438 * 11 10 8 13 13 C 1.38358 * 119.30187 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.46162 * 179.97438 * 13 12 11 15 15 F 1.39896 * 109.47489 * 210.00038 * 14 13 12 16 16 F 1.39908 * 109.47176 * 330.00164 * 14 13 12 17 17 N 1.31924 * 121.08247 * 0.02562 * 13 12 11 18 18 C 1.31699 * 121.87760 * 359.95476 * 17 13 12 19 19 C 1.53043 * 109.52593 * 298.62421 * 5 4 2 20 20 C 1.53193 * 109.30855 * 61.38930 * 19 5 4 21 21 N 1.46926 * 108.76548 * 305.34080 * 20 19 5 22 22 C 1.36935 * 120.63267 * 233.64394 * 21 20 19 23 23 H 1.07995 * 120.00124 * 151.80538 * 22 21 20 24 24 C 1.38809 * 119.99883 * 331.80176 * 22 21 20 25 25 N 1.31625 * 119.99958 * 343.09634 * 24 22 21 26 26 Si 1.86803 * 120.00225 * 163.09397 * 24 22 21 27 27 H 1.48496 * 109.46930 * 60.00103 * 26 24 22 28 28 H 1.48506 * 109.47065 * 180.02562 * 26 24 22 29 29 H 1.48492 * 109.47005 * 300.00155 * 26 24 22 30 30 H 1.09004 * 109.46609 * 180.35918 * 1 2 3 31 31 H 1.09001 * 109.46988 * 300.35169 * 1 2 3 32 32 H 1.08996 * 109.47400 * 60.35503 * 1 2 3 33 33 H 1.09004 * 109.49879 * 174.89401 * 4 2 1 34 34 H 1.09003 * 109.50069 * 54.79303 * 4 2 1 35 35 H 0.97000 * 119.99964 * 25.02391 * 7 5 4 36 36 H 1.07998 * 120.85565 * 0.02562 * 11 10 8 37 37 H 1.07996 * 120.35553 * 179.73037 * 12 11 10 38 38 H 1.09003 * 109.46999 * 89.99463 * 14 13 12 39 39 H 1.08001 * 119.71792 * 180.02562 * 18 17 13 40 40 H 1.08998 * 109.49451 * 181.32713 * 19 5 4 41 41 H 1.08996 * 109.49756 * 301.42451 * 19 5 4 42 42 H 1.08996 * 109.58048 * 185.56610 * 20 19 5 43 43 H 1.08995 * 109.71959 * 65.20000 * 20 19 5 44 44 H 0.97003 * 119.99567 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 6 1.6415 -2.2041 -1.1700 6 1 0.5566 -2.2815 -1.0990 7 7 2.1024 -2.8978 -2.3753 8 6 1.4747 -4.0157 -2.7910 9 8 0.5266 -4.4487 -2.1656 10 6 1.9403 -4.7161 -4.0069 11 6 1.2972 -5.8787 -4.4491 12 6 1.7715 -6.4958 -5.5929 13 6 2.8559 -5.9501 -6.2566 14 6 3.3759 -6.6197 -7.5026 15 9 4.7508 -6.3882 -7.6173 16 9 3.1396 -7.9965 -7.4254 17 7 3.4428 -4.8538 -5.8162 18 6 3.0281 -4.2301 -4.7329 19 6 2.2804 -2.8462 0.0636 20 6 1.7692 -2.1410 1.3238 21 7 2.0225 -0.6995 1.1945 22 6 2.7052 -0.0210 2.1685 23 1 3.2770 0.8591 1.9139 24 6 2.6622 -0.4643 3.4832 25 7 1.7279 -1.3104 3.8622 26 14 3.9302 0.1399 4.7147 27 1 3.8420 1.6177 4.8313 28 1 3.6677 -0.4782 6.0392 29 1 5.2893 -0.2398 4.2524 30 1 -0.3633 -1.0277 0.0064 31 1 -0.3633 0.5193 0.8868 32 1 -0.3634 0.5083 -0.8931 33 1 3.1298 -0.6503 -1.2913 34 1 1.6074 -0.2785 -2.1368 35 1 2.8592 -2.5525 -2.8741 36 1 0.4522 -6.2829 -3.9115 37 1 1.3034 -7.3967 -5.9611 38 1 2.8647 -6.2117 -8.3746 39 1 3.5344 -3.3346 -4.4038 40 1 2.0129 -3.9020 0.1038 41 1 3.3642 -2.7469 0.0052 42 1 2.2945 -2.5274 2.1971 43 1 0.6990 -2.3154 1.4343 44 1 1.6976 -1.6199 4.7811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947369045.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:08 Heat of formation + Delta-G solvation = -99.889174 kcal Electronic energy + Delta-G solvation = -29065.131974 eV Core-core repulsion = 24652.803154 eV Total energy + Delta-G solvation = -4412.328821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.02250 -48.04481 -41.87573 -40.59834 -39.23190 -36.14243 -34.47934 -33.91391 -33.39302 -32.39070 -31.27383 -28.80137 -27.98310 -26.17504 -25.04521 -24.40649 -23.65949 -23.03967 -21.72671 -20.25198 -19.35483 -18.79605 -18.61971 -18.51968 -18.12748 -17.57454 -16.90284 -16.52222 -16.22632 -16.17230 -15.75992 -15.50638 -15.32924 -14.94388 -14.89243 -14.80051 -14.45542 -14.31968 -14.23831 -14.23091 -14.05064 -13.88440 -13.63366 -13.13966 -12.92873 -12.62780 -12.55671 -12.36664 -12.30301 -12.06214 -12.02515 -11.79026 -11.50378 -11.43488 -11.16743 -11.02570 -10.68836 -10.55190 -10.47307 -10.04554 -8.67223 -7.85141 -5.30130 -0.73373 0.00040 1.47866 1.50197 1.56439 1.61070 1.97184 2.28328 2.52515 2.57528 3.08489 3.18980 3.30581 3.49863 3.61992 3.63918 3.70906 3.83956 3.87216 4.00050 4.08173 4.13135 4.28826 4.44678 4.45135 4.52954 4.71152 4.72800 4.75617 4.85403 4.86032 4.92292 5.08787 5.12760 5.17693 5.24156 5.34668 5.45341 5.45953 5.56229 5.69398 5.77391 6.41805 6.43208 6.50864 7.09674 7.16968 7.89099 8.40855 9.21290 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.022604 B = 0.002173 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.418508 B =12882.230956 C =13140.996097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.160 3.840 3 H 0.071 0.929 4 C -0.119 4.119 5 C 0.161 3.839 6 H 0.069 0.931 7 N -0.701 5.701 8 C 0.559 3.441 9 O -0.572 6.572 10 C -0.176 4.176 11 C -0.021 4.021 12 C -0.137 4.137 13 C 0.060 3.940 14 C 0.326 3.674 15 F -0.202 7.202 16 F -0.197 7.197 17 N -0.475 5.475 18 C 0.143 3.857 19 C -0.133 4.133 20 C 0.184 3.816 21 N -0.599 5.599 22 C -0.257 4.257 23 H 0.072 0.928 24 C -0.052 4.052 25 N -0.936 5.936 26 Si 0.964 3.036 27 H -0.274 1.274 28 H -0.299 1.299 29 H -0.278 1.278 30 H 0.035 0.965 31 H 0.027 0.973 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.414 0.586 36 H 0.157 0.843 37 H 0.179 0.821 38 H 0.176 0.824 39 H 0.190 0.810 40 H 0.044 0.956 41 H 0.061 0.939 42 H 0.052 0.948 43 H -0.008 1.008 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.571 -7.949 -26.009 27.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 H 0.089 0.911 4 C -0.158 4.158 5 C 0.057 3.943 6 H 0.087 0.913 7 N -0.352 5.352 8 C 0.346 3.654 9 O -0.452 6.452 10 C -0.181 4.181 11 C -0.048 4.048 12 C -0.157 4.157 13 C -0.078 4.078 14 C 0.272 3.728 15 F -0.183 7.183 16 F -0.178 7.178 17 N -0.184 5.184 18 C -0.016 4.016 19 C -0.173 4.173 20 C 0.058 3.942 21 N -0.322 5.322 22 C -0.387 4.387 23 H 0.090 0.910 24 C -0.248 4.248 25 N -0.582 5.582 26 Si 0.793 3.207 27 H -0.200 1.200 28 H -0.226 1.226 29 H -0.204 1.204 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.252 0.748 36 H 0.174 0.826 37 H 0.196 0.804 38 H 0.193 0.807 39 H 0.207 0.793 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.010 0.990 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.642 -7.974 -25.866 27.117 hybrid contribution -0.014 -0.196 1.881 1.891 sum 1.628 -8.171 -23.986 25.391 Atomic orbital electron populations 1.22195 0.98184 1.00342 1.00595 1.20716 0.92204 0.95552 0.86246 0.91121 1.22157 1.02093 0.92591 0.99008 1.20799 0.98605 0.92133 0.82760 0.91327 1.45974 1.34784 1.26314 1.28151 1.18341 0.82331 0.80687 0.84072 1.90799 1.29718 1.66613 1.58106 1.21093 1.00284 0.99157 0.97584 1.21944 0.97489 0.91424 0.93895 1.22086 0.96702 1.01884 0.95006 1.22281 0.94400 0.93703 0.97453 1.20535 0.78332 0.76704 0.97260 1.93016 1.33979 1.94241 1.97044 1.93024 1.94169 1.33135 1.97509 1.67369 1.29101 1.08118 1.13814 1.23291 0.91370 0.98346 0.88626 1.22338 1.00395 0.98321 0.96293 1.20411 0.95533 0.83701 0.94588 1.44365 1.64100 1.03574 1.20120 1.19490 1.21516 1.10447 0.87274 0.91042 1.25804 0.99440 1.00782 0.98739 1.70195 1.33616 1.37648 1.16786 0.85387 0.79418 0.78042 0.77870 1.19998 1.22603 1.20425 0.94615 0.95363 0.90612 0.90592 0.88724 0.74834 0.82566 0.80407 0.80732 0.79311 0.93726 0.92054 0.92998 0.98982 0.94338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.60 9.02 71.98 0.65 -4.95 16 2 C 0.16 5.98 3.29 44.97 0.15 6.13 16 3 H 0.07 2.59 7.93 -2.39 -0.02 2.57 16 4 C -0.12 -3.36 5.02 30.67 0.15 -3.21 16 5 C 0.16 5.04 2.21 45.02 0.10 5.14 16 6 H 0.07 2.49 5.94 -2.39 -0.01 2.47 16 7 N -0.70 -16.56 5.03 -445.27 -2.24 -18.80 16 8 C 0.56 14.75 7.75 86.79 0.67 15.42 16 9 O -0.57 -20.17 16.08 -3.88 -0.06 -20.24 16 10 C -0.18 -3.50 5.89 -19.99 -0.12 -3.61 16 11 C -0.02 -0.37 9.72 22.73 0.22 -0.15 16 12 C -0.14 -1.79 9.42 22.32 0.21 -1.58 16 13 C 0.06 0.89 6.58 42.57 0.28 1.17 16 14 C 0.33 3.56 5.72 71.24 0.41 3.97 16 15 F -0.20 -3.45 17.05 44.97 0.77 -2.69 16 16 F -0.20 -2.47 16.45 44.97 0.74 -1.74 16 17 N -0.48 -8.47 9.94 -182.81 -1.82 -10.29 16 18 C 0.14 2.35 10.71 85.02 0.91 3.26 16 19 C -0.13 -5.13 5.65 30.67 0.17 -4.95 16 20 C 0.18 8.98 4.89 86.36 0.42 9.40 16 21 N -0.60 -28.72 2.70 -675.26 -1.82 -30.54 16 22 C -0.26 -13.67 9.58 84.03 0.81 -12.86 16 23 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 24 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 25 N -0.94 -55.79 11.20 21.65 0.24 -55.55 16 26 Si 0.96 44.59 29.59 68.60 2.03 46.62 16 27 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 28 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 29 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 30 H 0.03 1.38 5.72 -2.38 -0.01 1.37 16 31 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.41 6.65 6.67 -92.71 -0.62 6.03 16 36 H 0.16 2.68 7.74 -2.91 -0.02 2.66 16 37 H 0.18 1.30 7.58 -2.91 -0.02 1.28 16 38 H 0.18 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.19 2.03 6.42 -2.91 -0.02 2.01 16 40 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.05 2.90 6.06 -2.39 -0.01 2.88 16 43 H -0.01 -0.42 7.49 -2.39 -0.02 -0.44 16 44 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -73.08 364.45 3.72 -69.36 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.43 Total: 13.17 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 5.45 Total: 10.68 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -5.64 Total: -115.18 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.06 Total: -20.24 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 1.51 Total: -4.42 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -73.08 3.72 -69.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947369045.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.529 kcal (2) G-P(sol) polarization free energy of solvation -73.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds