Wall clock time and date at job start Wed Apr 1 2020 00:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.70535 * 2 1 4 4 C 1.53186 * 109.58941 * 239.63907 * 2 1 3 5 5 C 1.53044 * 109.31237 * 185.57971 * 4 2 1 6 6 H 1.08995 * 109.46118 * 301.36024 * 5 4 2 7 7 N 1.46496 * 109.45871 * 181.38796 * 5 4 2 8 8 C 1.34775 * 120.00027 * 155.00259 * 7 5 4 9 9 O 1.21558 * 120.00275 * 359.97438 * 8 7 5 10 10 C 1.47840 * 120.00314 * 180.27385 * 8 7 5 11 11 C 1.40026 * 120.56201 * 179.44668 * 10 8 7 12 12 C 1.38360 * 118.28602 * 179.73571 * 11 10 8 13 13 C 1.38348 * 119.30619 * 0.53928 * 12 11 10 14 14 C 1.50698 * 119.46073 * 179.69927 * 13 12 11 15 15 F 1.39901 * 109.46826 * 210.02091 * 14 13 12 16 16 F 1.39894 * 109.47358 * 330.02025 * 14 13 12 17 17 N 1.31930 * 121.07580 * 359.72000 * 13 12 11 18 18 C 1.31692 * 121.88392 * 0.02562 * 17 13 12 19 19 C 1.53039 * 109.53799 * 61.37101 * 5 4 2 20 20 C 1.53198 * 109.30864 * 298.63142 * 19 5 4 21 21 N 1.46927 * 108.77707 * 54.63899 * 20 19 5 22 22 C 1.36932 * 120.63300 * 126.40996 * 21 20 19 23 23 H 1.07998 * 119.99901 * 209.03594 * 22 21 20 24 24 C 1.38811 * 120.00065 * 29.03509 * 22 21 20 25 25 N 1.31621 * 119.99793 * 15.05260 * 24 22 21 26 26 Si 1.86801 * 120.00049 * 195.04935 * 24 22 21 27 27 H 1.48509 * 109.46967 * 60.00246 * 26 24 22 28 28 H 1.48503 * 109.47081 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47162 * 300.00595 * 26 24 22 30 30 H 1.09006 * 109.47035 * 180.35154 * 1 2 3 31 31 H 1.09000 * 109.47499 * 300.35989 * 1 2 3 32 32 H 1.09009 * 109.46349 * 60.35865 * 1 2 3 33 33 H 1.08998 * 109.50091 * 65.63245 * 4 2 1 34 34 H 1.09003 * 109.52917 * 305.54693 * 4 2 1 35 35 H 0.96998 * 120.00489 * 335.00067 * 7 5 4 36 36 H 1.07998 * 120.85621 * 0.02562 * 11 10 8 37 37 H 1.08001 * 120.34468 * 180.26221 * 12 11 10 38 38 H 1.09000 * 109.47131 * 90.02615 * 14 13 12 39 39 H 1.07997 * 119.71435 * 180.02562 * 18 17 13 40 40 H 1.08999 * 109.49998 * 58.58406 * 19 5 4 41 41 H 1.08996 * 109.50028 * 178.68646 * 19 5 4 42 42 H 1.08993 * 109.58714 * 294.84793 * 20 19 5 43 43 H 1.08997 * 109.70303 * 174.49460 * 20 19 5 44 44 H 0.96999 * 119.99381 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 -1.2453 5 6 3.5676 -0.8481 -1.1699 6 1 4.0062 0.1472 -1.0988 7 7 4.0653 -1.5159 -2.3751 8 6 5.3296 -1.3023 -2.7904 9 8 6.0567 -0.5553 -2.1653 10 6 5.8300 -1.9715 -4.0100 11 6 7.1377 -1.7491 -4.4585 12 6 7.5589 -2.4040 -5.6022 13 6 6.6796 -3.2407 -6.2661 14 6 7.1326 -3.9504 -7.5159 15 9 6.0363 -4.1507 -8.3617 16 9 8.0920 -3.1723 -8.1724 17 7 5.4510 -3.4271 -5.8231 18 6 5.0052 -2.8305 -4.7369 19 6 3.9569 -1.6658 0.0637 20 6 3.4650 -0.9469 1.3239 21 7 2.0224 -0.6995 1.1946 22 6 1.1536 -1.1126 2.1691 23 1 0.1360 -1.3674 1.9125 24 6 1.5808 -1.2038 3.4867 25 7 2.7035 -0.6247 3.8560 26 14 0.5622 -2.1485 4.7355 27 1 0.4338 -3.5629 4.3013 28 1 1.2309 -2.0968 6.0604 29 1 -0.7874 -1.5375 4.8373 30 1 -0.3633 -1.0277 0.0063 31 1 -0.3634 0.5194 0.8867 32 1 -0.3632 0.5083 -0.8933 33 1 1.7662 -0.1670 -2.1368 34 1 1.6031 -1.7254 -1.2918 35 1 3.4850 -2.1117 -2.8741 36 1 7.8020 -1.0871 -3.9228 37 1 8.5622 -2.2600 -5.9752 38 1 7.5666 -4.9141 -7.2495 39 1 3.9929 -3.0087 -4.4055 40 1 3.4983 -2.6529 0.0055 41 1 5.0411 -1.7696 0.1041 42 1 3.9902 0.0020 1.4319 43 1 3.6519 -1.5695 2.1988 44 1 3.0018 -0.6881 4.7768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947369046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:12 Heat of formation + Delta-G solvation = -79.093605 kcal Electronic energy + Delta-G solvation = -28943.926256 eV Core-core repulsion = 24532.499199 eV Total energy + Delta-G solvation = -4411.427057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.45373 -47.45392 -41.02853 -39.44971 -37.68605 -34.80286 -33.24062 -32.86442 -32.34502 -31.26246 -29.60842 -27.57223 -26.38709 -24.88802 -24.31534 -23.39938 -22.06710 -21.26583 -20.26755 -19.44014 -18.50970 -18.02093 -17.94589 -17.58457 -16.66021 -16.34714 -15.58322 -15.48836 -15.14811 -15.08821 -14.57421 -14.26126 -14.16878 -13.95941 -13.81177 -13.74064 -13.54100 -13.41049 -13.30941 -13.05859 -12.84228 -12.71021 -11.80502 -11.64158 -11.27265 -11.15962 -10.97646 -10.94907 -10.68519 -10.48166 -10.42445 -10.36969 -10.19284 -10.08192 -9.87742 -9.78945 -9.74987 -9.43977 -8.84139 -8.45487 -6.67687 -5.79341 -3.23509 0.01161 0.67881 2.52386 2.85435 3.05186 3.36776 3.37757 3.43150 3.43273 3.58471 3.76819 4.22102 4.29481 4.37198 4.46975 4.52431 4.62291 4.74494 5.01705 5.19614 5.31806 5.38486 5.43957 5.51354 5.58078 5.70725 5.90691 5.92999 6.10533 6.15160 6.27485 6.32410 6.37624 6.44847 6.57817 6.73320 6.78697 6.98703 7.05943 7.17809 7.33769 7.48267 7.66959 7.79949 8.12795 8.44565 9.20042 9.83481 10.40107 11.29313 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.024584 B = 0.002120 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.700860 B =13201.362747 C =13428.890869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.135 4.135 5 C 0.150 3.850 6 H 0.084 0.916 7 N -0.714 5.714 8 C 0.556 3.444 9 O -0.528 6.528 10 C -0.162 4.162 11 C -0.016 4.016 12 C -0.146 4.146 13 C 0.063 3.937 14 C 0.327 3.673 15 F -0.185 7.185 16 F -0.193 7.193 17 N -0.457 5.457 18 C 0.137 3.863 19 C -0.147 4.147 20 C 0.174 3.826 21 N -0.587 5.587 22 C -0.252 4.252 23 H 0.070 0.930 24 C 0.002 3.998 25 N -0.903 5.903 26 Si 0.902 3.098 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.395 0.605 36 H 0.157 0.843 37 H 0.152 0.848 38 H 0.133 0.867 39 H 0.168 0.832 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.020 0.980 43 H 0.092 0.908 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.134 -5.840 -21.142 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.175 4.175 5 C 0.047 3.953 6 H 0.102 0.898 7 N -0.364 5.364 8 C 0.341 3.659 9 O -0.405 6.405 10 C -0.167 4.167 11 C -0.043 4.043 12 C -0.166 4.166 13 C -0.076 4.076 14 C 0.273 3.727 15 F -0.166 7.166 16 F -0.175 7.175 17 N -0.165 5.165 18 C -0.022 4.022 19 C -0.187 4.187 20 C 0.048 3.952 21 N -0.311 5.311 22 C -0.381 4.381 23 H 0.088 0.912 24 C -0.196 4.196 25 N -0.547 5.547 26 Si 0.731 3.269 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.209 1.209 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.229 0.771 36 H 0.175 0.825 37 H 0.170 0.830 38 H 0.150 0.850 39 H 0.185 0.815 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.038 0.962 43 H 0.110 0.890 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.142 -5.820 -20.985 23.250 hybrid contribution -0.181 -0.196 0.823 0.865 sum 7.961 -6.016 -20.162 22.496 Atomic orbital electron populations 1.21794 0.95682 1.01479 1.00351 1.20355 0.93135 0.93574 0.86567 0.95497 1.22402 0.93399 1.01812 0.99867 1.21148 0.94484 0.96830 0.82814 0.89751 1.46290 1.12591 1.48268 1.29270 1.17943 0.82538 0.81692 0.83734 1.90817 1.56154 1.36891 1.56609 1.21341 0.96404 1.00803 0.98134 1.21804 0.94386 0.94806 0.93275 1.21870 1.01758 0.96929 0.96003 1.21852 0.91584 0.97075 0.97062 1.20091 0.76953 0.93881 0.81785 1.93049 1.55169 1.95659 1.72715 1.93026 1.63922 1.77948 1.82556 1.67290 1.13883 1.22178 1.13195 1.23012 0.99610 0.90576 0.89030 1.22585 0.99776 0.99638 0.96720 1.20766 0.83226 0.97367 0.93863 1.44169 1.02987 1.64871 1.19048 1.19126 0.94825 1.37952 0.86236 0.91233 1.25102 0.97830 0.99697 0.97000 1.70002 1.23338 1.44409 1.16982 0.86391 0.79640 0.80119 0.80706 1.21095 1.21690 1.20897 0.92717 0.91840 0.94274 0.92559 0.91663 0.77084 0.82522 0.83033 0.85031 0.81479 0.92550 0.92848 0.96154 0.89037 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 7.94 37.16 0.30 -2.11 16 2 C 0.17 3.35 3.50 -67.60 -0.24 3.11 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.12 4.84 -26.61 -0.13 -2.25 16 5 C 0.15 2.45 2.42 -67.89 -0.16 2.29 16 6 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 7 N -0.71 -9.19 5.03 -54.71 -0.28 -9.47 16 8 C 0.56 7.65 7.74 -12.33 -0.10 7.56 16 9 O -0.53 -9.27 16.08 5.32 0.09 -9.18 16 10 C -0.16 -1.74 5.89 -104.82 -0.62 -2.36 16 11 C -0.02 -0.15 9.72 -38.87 -0.38 -0.53 16 12 C -0.15 -1.13 9.42 -39.50 -0.37 -1.51 16 13 C 0.06 0.55 6.58 -82.51 -0.54 0.01 16 14 C 0.33 2.28 5.72 36.00 0.21 2.49 16 15 F -0.18 -1.77 17.05 2.25 0.04 -1.73 16 16 F -0.19 -1.46 16.45 2.25 0.04 -1.42 16 17 N -0.46 -4.67 9.94 -9.14 -0.09 -4.76 16 18 C 0.14 1.30 10.71 -17.13 -0.18 1.12 16 19 C -0.15 -2.78 5.65 -26.61 -0.15 -2.93 16 20 C 0.17 4.08 5.29 -3.71 -0.02 4.06 16 21 N -0.59 -13.95 2.99 -164.78 -0.49 -14.44 16 22 C -0.25 -6.55 8.61 -15.06 -0.13 -6.68 16 23 H 0.07 1.75 6.20 -52.49 -0.33 1.43 16 24 C 0.00 0.06 4.96 -17.43 -0.09 -0.02 16 25 N -0.90 -25.77 11.14 55.49 0.62 -25.16 16 26 Si 0.90 21.24 29.58 -169.99 -5.03 16.21 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 30 H 0.05 0.97 7.40 -51.93 -0.38 0.59 16 31 H 0.06 1.23 7.66 -51.93 -0.40 0.83 16 32 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.39 3.85 6.67 -40.82 -0.27 3.58 16 36 H 0.16 1.40 7.74 -52.49 -0.41 1.00 16 37 H 0.15 0.80 7.59 -52.49 -0.40 0.40 16 38 H 0.13 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.17 1.18 6.42 -52.49 -0.34 0.84 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 2.41 6.06 -51.93 -0.31 2.10 16 44 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 365.32 15.07 5.51 5.51 Total: -1.00 -32.01 365.32 -7.95 -39.96 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.75 Total: 2.24 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -2.60 Total: 2.25 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.24 Total: -53.82 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.08 Total: -3.16 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.01 -7.95 -39.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947369046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.132 kcal (2) G-P(sol) polarization free energy of solvation -32.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds