Wall clock time and date at job start Wed Apr 1 2020 00:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.70535 * 2 1 4 4 C 1.53186 * 109.58941 * 239.63907 * 2 1 3 5 5 C 1.53044 * 109.31237 * 185.57971 * 4 2 1 6 6 H 1.08995 * 109.46118 * 301.36024 * 5 4 2 7 7 N 1.46496 * 109.45871 * 181.38796 * 5 4 2 8 8 C 1.34775 * 120.00027 * 155.00259 * 7 5 4 9 9 O 1.21558 * 120.00275 * 359.97438 * 8 7 5 10 10 C 1.47840 * 120.00314 * 180.27385 * 8 7 5 11 11 C 1.40026 * 120.56201 * 179.44668 * 10 8 7 12 12 C 1.38360 * 118.28602 * 179.73571 * 11 10 8 13 13 C 1.38348 * 119.30619 * 0.53928 * 12 11 10 14 14 C 1.50698 * 119.46073 * 179.69927 * 13 12 11 15 15 F 1.39901 * 109.46826 * 210.02091 * 14 13 12 16 16 F 1.39894 * 109.47358 * 330.02025 * 14 13 12 17 17 N 1.31930 * 121.07580 * 359.72000 * 13 12 11 18 18 C 1.31692 * 121.88392 * 0.02562 * 17 13 12 19 19 C 1.53039 * 109.53799 * 61.37101 * 5 4 2 20 20 C 1.53198 * 109.30864 * 298.63142 * 19 5 4 21 21 N 1.46927 * 108.77707 * 54.63899 * 20 19 5 22 22 C 1.36932 * 120.63300 * 126.40996 * 21 20 19 23 23 H 1.07998 * 119.99901 * 209.03594 * 22 21 20 24 24 C 1.38811 * 120.00065 * 29.03509 * 22 21 20 25 25 N 1.31621 * 119.99793 * 15.05260 * 24 22 21 26 26 Si 1.86801 * 120.00049 * 195.04935 * 24 22 21 27 27 H 1.48509 * 109.46967 * 60.00246 * 26 24 22 28 28 H 1.48503 * 109.47081 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47162 * 300.00595 * 26 24 22 30 30 H 1.09006 * 109.47035 * 180.35154 * 1 2 3 31 31 H 1.09000 * 109.47499 * 300.35989 * 1 2 3 32 32 H 1.09009 * 109.46349 * 60.35865 * 1 2 3 33 33 H 1.08998 * 109.50091 * 65.63245 * 4 2 1 34 34 H 1.09003 * 109.52917 * 305.54693 * 4 2 1 35 35 H 0.96998 * 120.00489 * 335.00067 * 7 5 4 36 36 H 1.07998 * 120.85621 * 0.02562 * 11 10 8 37 37 H 1.08001 * 120.34468 * 180.26221 * 12 11 10 38 38 H 1.09000 * 109.47131 * 90.02615 * 14 13 12 39 39 H 1.07997 * 119.71435 * 180.02562 * 18 17 13 40 40 H 1.08999 * 109.49998 * 58.58406 * 19 5 4 41 41 H 1.08996 * 109.50028 * 178.68646 * 19 5 4 42 42 H 1.08993 * 109.58714 * 294.84793 * 20 19 5 43 43 H 1.08997 * 109.70303 * 174.49460 * 20 19 5 44 44 H 0.96999 * 119.99381 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 -1.2453 5 6 3.5676 -0.8481 -1.1699 6 1 4.0062 0.1472 -1.0988 7 7 4.0653 -1.5159 -2.3751 8 6 5.3296 -1.3023 -2.7904 9 8 6.0567 -0.5553 -2.1653 10 6 5.8300 -1.9715 -4.0100 11 6 7.1377 -1.7491 -4.4585 12 6 7.5589 -2.4040 -5.6022 13 6 6.6796 -3.2407 -6.2661 14 6 7.1326 -3.9504 -7.5159 15 9 6.0363 -4.1507 -8.3617 16 9 8.0920 -3.1723 -8.1724 17 7 5.4510 -3.4271 -5.8231 18 6 5.0052 -2.8305 -4.7369 19 6 3.9569 -1.6658 0.0637 20 6 3.4650 -0.9469 1.3239 21 7 2.0224 -0.6995 1.1946 22 6 1.1536 -1.1126 2.1691 23 1 0.1360 -1.3674 1.9125 24 6 1.5808 -1.2038 3.4867 25 7 2.7035 -0.6247 3.8560 26 14 0.5622 -2.1485 4.7355 27 1 0.4338 -3.5629 4.3013 28 1 1.2309 -2.0968 6.0604 29 1 -0.7874 -1.5375 4.8373 30 1 -0.3633 -1.0277 0.0063 31 1 -0.3634 0.5194 0.8867 32 1 -0.3632 0.5083 -0.8933 33 1 1.7662 -0.1670 -2.1368 34 1 1.6031 -1.7254 -1.2918 35 1 3.4850 -2.1117 -2.8741 36 1 7.8020 -1.0871 -3.9228 37 1 8.5622 -2.2600 -5.9752 38 1 7.5666 -4.9141 -7.2495 39 1 3.9929 -3.0087 -4.4055 40 1 3.4983 -2.6529 0.0055 41 1 5.0411 -1.7696 0.1041 42 1 3.9902 0.0020 1.4319 43 1 3.6519 -1.5695 2.1988 44 1 3.0018 -0.6881 4.7768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947369046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:12 Heat of formation + Delta-G solvation = -99.581298 kcal Electronic energy + Delta-G solvation = -28944.814670 eV Core-core repulsion = 24532.499199 eV Total energy + Delta-G solvation = -4412.315470 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.02618 -48.04613 -41.87574 -40.55639 -39.18401 -36.23005 -34.37559 -33.95636 -33.51448 -32.72033 -31.22787 -28.47797 -27.79420 -26.61306 -25.04613 -24.37036 -23.58547 -22.50667 -21.56864 -20.99843 -19.35408 -18.71818 -18.54394 -18.41578 -18.13447 -17.50150 -17.05664 -16.50934 -16.22514 -16.15980 -15.78334 -15.62310 -15.33631 -15.00176 -14.92121 -14.85755 -14.58111 -14.44061 -14.30298 -14.26734 -14.11740 -13.64632 -13.32607 -12.93700 -12.72278 -12.68113 -12.60858 -12.37852 -12.34680 -12.11758 -11.86030 -11.71799 -11.53987 -11.51456 -11.16914 -11.12834 -10.69579 -10.54402 -10.47690 -10.06798 -8.63937 -7.82641 -5.28855 -0.73950 -0.00408 1.48576 1.50519 1.56759 1.60209 1.95495 2.27449 2.53705 2.56646 3.08061 3.18604 3.33405 3.48849 3.60708 3.62381 3.70710 3.84029 3.87523 3.99609 4.05964 4.12729 4.26401 4.39661 4.44309 4.61986 4.69054 4.73976 4.76697 4.81531 4.88734 4.96793 5.07214 5.08927 5.16860 5.23681 5.39723 5.44499 5.53927 5.57091 5.73047 5.74557 6.41705 6.44391 6.50275 7.08470 7.18490 7.90442 8.42676 9.24549 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.024584 B = 0.002120 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.700860 B =13201.362747 C =13428.890869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.159 3.841 3 H 0.011 0.989 4 C -0.119 4.119 5 C 0.162 3.838 6 H 0.060 0.940 7 N -0.700 5.700 8 C 0.559 3.441 9 O -0.573 6.573 10 C -0.176 4.176 11 C -0.021 4.021 12 C -0.137 4.137 13 C 0.060 3.940 14 C 0.326 3.674 15 F -0.201 7.201 16 F -0.196 7.196 17 N -0.475 5.475 18 C 0.143 3.857 19 C -0.131 4.131 20 C 0.182 3.818 21 N -0.603 5.603 22 C -0.247 4.247 23 H 0.081 0.919 24 C -0.058 4.058 25 N -0.941 5.941 26 Si 0.964 3.036 27 H -0.277 1.277 28 H -0.301 1.301 29 H -0.274 1.274 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.414 0.586 36 H 0.157 0.843 37 H 0.179 0.821 38 H 0.174 0.826 39 H 0.190 0.810 40 H 0.063 0.937 41 H 0.046 0.954 42 H -0.013 1.013 43 H 0.056 0.944 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.265 -7.429 -24.081 26.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.052 3.948 3 H 0.029 0.971 4 C -0.159 4.159 5 C 0.057 3.943 6 H 0.078 0.922 7 N -0.351 5.351 8 C 0.346 3.654 9 O -0.453 6.453 10 C -0.181 4.181 11 C -0.047 4.047 12 C -0.157 4.157 13 C -0.078 4.078 14 C 0.272 3.728 15 F -0.182 7.182 16 F -0.178 7.178 17 N -0.184 5.184 18 C -0.016 4.016 19 C -0.171 4.171 20 C 0.055 3.945 21 N -0.327 5.327 22 C -0.377 4.377 23 H 0.098 0.902 24 C -0.253 4.253 25 N -0.588 5.588 26 Si 0.792 3.208 27 H -0.203 1.203 28 H -0.228 1.228 29 H -0.200 1.200 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.252 0.748 36 H 0.174 0.826 37 H 0.196 0.804 38 H 0.191 0.809 39 H 0.207 0.793 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.005 0.995 43 H 0.075 0.925 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.234 -7.434 -23.992 26.139 hybrid contribution 0.143 0.348 1.643 1.686 sum 7.378 -7.086 -22.349 24.579 Atomic orbital electron populations 1.21715 0.93876 1.01759 1.01115 1.20645 0.94718 0.92917 0.86475 0.97090 1.22206 0.92211 1.02514 0.98933 1.20734 0.95169 0.95331 0.83028 0.92161 1.45948 1.12832 1.48235 1.28115 1.18355 0.82094 0.80877 0.84110 1.90802 1.57294 1.38969 1.58231 1.21084 0.97377 1.02168 0.97499 1.21947 0.94054 0.94916 0.93823 1.22088 1.02807 0.95806 0.94970 1.22276 0.91280 0.96687 0.97555 1.20504 0.76474 0.95231 0.80583 1.93017 1.56234 1.95749 1.73209 1.93021 1.63860 1.78302 1.82582 1.67367 1.14716 1.22792 1.13516 1.23289 1.00262 0.89572 0.88467 1.22313 0.99123 0.99663 0.95974 1.20467 0.83620 0.95511 0.94874 1.44431 1.02638 1.65589 1.20029 1.19518 0.95350 1.36239 0.86639 0.90181 1.25867 0.99097 1.01257 0.99034 1.70186 1.25332 1.46601 1.16715 0.85394 0.78313 0.79098 0.77967 1.20330 1.22773 1.19999 0.92512 0.94267 0.90423 0.89053 0.90282 0.74768 0.82580 0.80390 0.80911 0.79294 0.91801 0.93574 0.99496 0.92524 0.94461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 7.94 71.98 0.57 -3.66 16 2 C 0.16 6.06 3.50 44.97 0.16 6.22 16 3 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 4 C -0.12 -3.43 4.84 30.67 0.15 -3.28 16 5 C 0.16 5.14 2.42 45.02 0.11 5.25 16 6 H 0.06 2.26 7.58 -2.39 -0.02 2.24 16 7 N -0.70 -16.70 5.03 -445.29 -2.24 -18.94 16 8 C 0.56 14.89 7.74 86.79 0.67 15.56 16 9 O -0.57 -20.42 16.08 -3.90 -0.06 -20.48 16 10 C -0.18 -3.52 5.89 -19.99 -0.12 -3.64 16 11 C -0.02 -0.37 9.72 22.73 0.22 -0.15 16 12 C -0.14 -1.79 9.42 22.32 0.21 -1.58 16 13 C 0.06 0.89 6.58 42.57 0.28 1.17 16 14 C 0.33 3.57 5.72 71.24 0.41 3.98 16 15 F -0.20 -3.39 17.05 44.97 0.77 -2.62 16 16 F -0.20 -2.42 16.45 44.97 0.74 -1.68 16 17 N -0.48 -8.47 9.94 -182.82 -1.82 -10.29 16 18 C 0.14 2.36 10.71 85.02 0.91 3.27 16 19 C -0.13 -5.01 5.65 30.67 0.17 -4.83 16 20 C 0.18 8.93 5.29 86.36 0.46 9.39 16 21 N -0.60 -29.05 2.99 -675.23 -2.02 -31.07 16 22 C -0.25 -12.94 8.61 84.03 0.72 -12.22 16 23 H 0.08 3.97 6.20 -2.91 -0.02 3.95 16 24 C -0.06 -3.20 4.96 84.86 0.42 -2.78 16 25 N -0.94 -56.23 11.14 21.65 0.24 -55.99 16 26 Si 0.96 44.41 29.58 68.60 2.03 46.44 16 27 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 28 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 29 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 30 H 0.06 1.86 7.40 -2.38 -0.02 1.84 16 31 H 0.04 1.47 7.66 -2.39 -0.02 1.45 16 32 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.41 6.71 6.67 -92.71 -0.62 6.09 16 36 H 0.16 2.70 7.74 -2.91 -0.02 2.68 16 37 H 0.18 1.31 7.59 -2.91 -0.02 1.29 16 38 H 0.17 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.19 2.03 6.42 -2.91 -0.02 2.01 16 40 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 42 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 43 H 0.06 3.16 6.06 -2.39 -0.01 3.15 16 44 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -73.14 365.32 3.41 -69.73 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.43 Total: 12.20 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 5.34 Total: 12.71 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -5.84 Total: -116.29 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.06 Total: -20.48 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 1.51 Total: -4.30 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -73.14 3.41 -69.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947369046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.848 kcal (2) G-P(sol) polarization free energy of solvation -73.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds