Wall clock time and date at job start Wed Apr 1 2020 00:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08997 * 109.58949 * 2 1 4 4 C 1.53194 * 109.58459 * 239.71394 * 2 1 3 5 5 C 1.53042 * 109.31227 * 185.43249 * 4 2 1 6 6 H 1.08998 * 109.46771 * 301.35014 * 5 4 2 7 7 N 1.46498 * 109.46195 * 181.37528 * 5 4 2 8 8 C 1.34781 * 120.00297 * 154.97630 * 7 5 4 9 9 O 1.21549 * 119.99624 * 359.97438 * 8 7 5 10 10 C 1.47836 * 120.00034 * 179.97438 * 8 7 5 11 11 C 1.40024 * 120.56080 * 328.08886 * 10 8 7 12 12 C 1.38355 * 118.28788 * 179.73437 * 11 10 8 13 13 C 1.38362 * 119.30341 * 0.55911 * 12 11 10 14 14 N 1.31930 * 121.07344 * 359.70058 * 13 12 11 15 15 C 1.31684 * 121.88313 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.71498 * 180.02562 * 15 14 13 17 17 F 1.39897 * 109.47210 * 13.15690 * 16 15 14 18 18 F 1.39895 * 109.47356 * 133.16273 * 16 15 14 19 19 C 1.53043 * 109.53607 * 61.36895 * 5 4 2 20 20 C 1.53186 * 109.31415 * 298.63627 * 19 5 4 21 21 N 1.46924 * 109.70410 * 120.35844 * 2 1 3 22 22 C 1.36940 * 120.63291 * 353.44240 * 21 2 1 23 23 H 1.08002 * 119.99776 * 32.11007 * 22 21 2 24 24 C 1.38813 * 120.00201 * 212.11207 * 22 21 2 25 25 N 1.31621 * 119.99592 * 10.74777 * 24 22 21 26 26 Si 1.86802 * 119.99988 * 190.74074 * 24 22 21 27 27 H 1.48498 * 109.46569 * 60.00438 * 26 24 22 28 28 H 1.48497 * 109.46720 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47189 * 300.00217 * 26 24 22 30 30 H 1.09005 * 109.47389 * 180.28251 * 1 2 3 31 31 H 1.09001 * 109.47212 * 300.28268 * 1 2 3 32 32 H 1.09004 * 109.47400 * 60.28184 * 1 2 3 33 33 H 1.09007 * 109.49688 * 65.48958 * 4 2 1 34 34 H 1.08995 * 109.50264 * 305.38519 * 4 2 1 35 35 H 0.97005 * 119.99934 * 334.97581 * 7 5 4 36 36 H 1.07994 * 120.85506 * 0.02562 * 11 10 8 37 37 H 1.07996 * 120.34986 * 180.26201 * 12 11 10 38 38 H 1.07993 * 119.46090 * 179.72293 * 13 12 11 39 39 H 1.09004 * 109.46670 * 253.15616 * 16 15 14 40 40 H 1.09007 * 109.49762 * 58.58416 * 19 5 4 41 41 H 1.09001 * 109.50197 * 178.67963 * 19 5 4 42 42 H 1.09006 * 109.58337 * 294.84464 * 20 19 5 43 43 H 1.09001 * 109.70472 * 174.49204 * 20 19 5 44 44 H 0.97000 * 119.99322 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0434 -0.7279 -1.2463 5 6 3.5677 -0.8434 -1.1730 6 1 4.0045 0.1527 -1.1022 7 7 4.0653 -1.5099 -2.3789 8 6 5.3285 -1.2933 -2.7962 9 8 6.0546 -0.5446 -2.1721 10 6 5.8307 -1.9664 -4.0128 11 6 5.3668 -3.2397 -4.3650 12 6 5.8645 -3.8236 -5.5163 13 6 6.8042 -3.1423 -6.2694 14 7 7.2271 -1.9454 -5.9100 15 6 6.7789 -1.3457 -4.8267 16 6 7.2954 0.0224 -4.4623 17 9 7.9896 0.5636 -5.5496 18 9 6.2199 0.8548 -4.1345 19 6 3.9603 -1.6609 0.0598 20 6 3.4684 -0.9437 1.3210 21 7 2.0253 -0.6991 1.1935 22 6 1.1585 -1.1144 2.1689 23 1 0.1558 -1.4183 1.9066 24 6 1.5685 -1.1449 3.4948 25 7 2.7051 -0.5813 3.8452 26 14 0.5070 -1.9857 4.7816 27 1 0.3382 -3.4174 4.4253 28 1 1.1623 -1.8796 6.1099 29 1 -0.8234 -1.3280 4.8325 30 1 -0.3634 -1.0277 0.0051 31 1 -0.3634 0.5182 0.8874 32 1 -0.3634 0.5095 -0.8925 33 1 1.7637 -0.1655 -2.1372 34 1 1.6049 -1.7247 -1.2921 35 1 3.4857 -2.1072 -2.8772 36 1 4.6358 -3.7509 -3.7561 37 1 5.5265 -4.8029 -5.8215 38 1 7.1977 -3.5976 -7.1661 39 1 7.9660 -0.0585 -3.6068 40 1 3.5035 -2.6489 0.0018 41 1 5.0448 -1.7627 0.0987 42 1 3.9920 0.0063 1.4287 43 1 3.6578 -1.5664 2.1953 44 1 2.9917 -0.6029 4.7716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947527113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:16 Heat of formation + Delta-G solvation = -76.783590 kcal Electronic energy + Delta-G solvation = -30029.383762 eV Core-core repulsion = 25618.056874 eV Total energy + Delta-G solvation = -4411.326887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.99359 -46.99806 -40.99604 -39.39008 -37.64582 -34.77624 -33.36597 -32.62684 -32.34464 -31.21770 -29.52647 -27.15020 -26.38578 -25.28261 -24.48208 -22.79173 -22.07087 -21.35279 -20.20475 -19.41365 -18.25872 -17.79439 -17.58737 -17.36354 -16.40182 -16.31662 -15.82466 -15.53729 -15.15458 -14.89188 -14.54044 -14.10946 -13.92615 -13.82956 -13.73230 -13.57691 -13.29730 -13.26024 -13.24080 -12.81677 -12.75887 -12.57005 -11.62493 -11.57008 -11.24954 -11.12521 -10.95755 -10.93284 -10.68768 -10.49803 -10.35990 -10.30482 -10.15171 -10.06692 -9.91213 -9.78462 -9.66608 -9.43881 -8.80588 -8.45411 -6.61821 -5.78717 -3.27026 0.16799 0.59024 2.61456 3.02260 3.13749 3.29244 3.36359 3.42180 3.42656 3.86360 4.12993 4.27240 4.33635 4.46652 4.50846 4.72300 4.89428 4.93232 4.97837 5.23994 5.34145 5.40615 5.41494 5.50777 5.54170 5.72829 5.93825 5.96596 6.12631 6.17724 6.29443 6.35273 6.39120 6.46693 6.59781 6.74916 6.80854 7.01094 7.08087 7.26578 7.35556 7.50296 7.69254 7.80034 8.14689 8.47461 9.21529 9.83457 10.41894 11.29711 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.020406 B = 0.002692 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.806958 B =10397.312142 C =10667.959755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.028 0.972 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.086 0.914 7 N -0.711 5.711 8 C 0.557 3.443 9 O -0.523 6.523 10 C -0.148 4.148 11 C -0.046 4.046 12 C -0.160 4.160 13 C 0.117 3.883 14 N -0.457 5.457 15 C 0.102 3.898 16 C 0.329 3.671 17 F -0.191 7.191 18 F -0.182 7.182 19 C -0.147 4.147 20 C 0.176 3.824 21 N -0.587 5.587 22 C -0.253 4.253 23 H 0.068 0.932 24 C 0.005 3.995 25 N -0.903 5.903 26 Si 0.902 3.098 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.395 0.605 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.168 0.832 39 H 0.138 0.862 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.021 0.979 43 H 0.090 0.910 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.577 -6.688 -19.885 21.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.048 3.952 6 H 0.104 0.896 7 N -0.360 5.360 8 C 0.342 3.658 9 O -0.400 6.400 10 C -0.153 4.153 11 C -0.072 4.072 12 C -0.180 4.180 13 C -0.040 4.040 14 N -0.165 5.165 15 C -0.039 4.039 16 C 0.275 3.725 17 F -0.172 7.172 18 F -0.163 7.163 19 C -0.187 4.187 20 C 0.049 3.951 21 N -0.311 5.311 22 C -0.383 4.383 23 H 0.085 0.915 24 C -0.194 4.194 25 N -0.547 5.547 26 Si 0.732 3.268 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.209 1.209 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.228 0.772 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.186 0.814 39 H 0.155 0.845 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.039 0.961 43 H 0.108 0.892 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.759 -5.642 -19.755 21.628 hybrid contribution -1.419 -1.279 0.842 2.088 sum 5.340 -6.921 -18.913 20.835 Atomic orbital electron populations 1.21781 0.95726 1.01383 1.00343 1.20356 0.93081 0.93626 0.86550 0.95468 1.22394 0.93458 1.01678 0.99892 1.21151 0.94436 0.96987 0.82664 0.89604 1.46231 1.12489 1.48154 1.29127 1.17896 0.82879 0.81579 0.83492 1.90811 1.56132 1.36407 1.56649 1.20894 0.99635 0.96965 0.97834 1.21851 0.96856 0.92938 0.95532 1.22274 0.98288 1.01961 0.95451 1.23034 0.92762 0.89431 0.98772 1.67430 1.24793 1.10431 1.13873 1.21858 0.93654 0.96852 0.91512 1.20108 0.83328 0.81640 0.87470 1.93011 1.79217 1.87068 1.57910 1.93062 1.57400 1.73035 1.92829 1.22593 0.99743 0.99547 0.96819 1.20750 0.83291 0.97361 0.93664 1.44129 1.02911 1.64874 1.19171 1.19093 0.96133 1.37349 0.85708 0.91461 1.25197 0.97584 0.99325 0.97262 1.69970 1.22349 1.45469 1.16923 0.86383 0.79911 0.79492 0.80998 1.21059 1.21653 1.20885 0.92827 0.91832 0.94305 0.92600 0.91822 0.77166 0.83321 0.83365 0.81440 0.84532 0.92697 0.92847 0.96082 0.89186 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 7.97 37.15 0.30 -2.12 16 2 C 0.17 3.40 3.49 -67.60 -0.24 3.17 16 3 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.13 -2.16 4.84 -26.61 -0.13 -2.28 16 5 C 0.15 2.50 2.42 -67.89 -0.16 2.34 16 6 H 0.09 1.64 7.57 -51.93 -0.39 1.24 16 7 N -0.71 -9.42 5.00 -54.71 -0.27 -9.69 16 8 C 0.56 7.96 6.55 -12.33 -0.08 7.88 16 9 O -0.52 -9.19 13.55 5.32 0.07 -9.12 16 10 C -0.15 -1.71 5.79 -104.82 -0.61 -2.31 16 11 C -0.05 -0.37 9.46 -38.87 -0.37 -0.73 16 12 C -0.16 -0.99 10.10 -39.49 -0.40 -1.39 16 13 C 0.12 0.89 11.17 -17.46 -0.20 0.69 16 14 N -0.46 -5.15 9.77 -9.14 -0.09 -5.23 16 15 C 0.10 1.26 6.60 -82.18 -0.54 0.71 16 16 C 0.33 4.32 4.59 36.01 0.17 4.49 16 17 F -0.19 -2.59 16.91 2.25 0.04 -2.55 16 18 F -0.18 -2.81 14.77 2.25 0.03 -2.77 16 19 C -0.15 -2.78 5.65 -26.61 -0.15 -2.93 16 20 C 0.18 4.13 5.25 -3.71 -0.02 4.11 16 21 N -0.59 -14.03 2.98 -164.78 -0.49 -14.52 16 22 C -0.25 -6.59 8.54 -15.06 -0.13 -6.72 16 23 H 0.07 1.70 6.30 -52.49 -0.33 1.37 16 24 C 0.01 0.14 5.04 -17.43 -0.09 0.05 16 25 N -0.90 -25.79 11.11 55.49 0.62 -25.17 16 26 Si 0.90 21.20 29.57 -169.99 -5.03 16.17 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 30 H 0.05 0.96 7.40 -51.93 -0.38 0.57 16 31 H 0.06 1.25 7.69 -51.93 -0.40 0.85 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.39 3.99 7.65 -40.82 -0.31 3.68 16 36 H 0.15 0.86 7.52 -52.49 -0.39 0.47 16 37 H 0.15 0.42 8.06 -52.49 -0.42 0.00 16 38 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.14 1.61 7.70 -51.93 -0.40 1.21 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 2.37 6.16 -51.93 -0.32 2.05 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -32.18 361.84 -8.19 -40.36 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.87 Total: 2.13 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -2.65 Total: 4.94 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.24 Total: -54.61 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.07 Total: -9.12 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.07 Total: -5.33 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.18 -8.19 -40.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947527113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.421 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds