Wall clock time and date at job start Wed Apr 1 2020 00:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08997 * 109.58949 * 2 1 4 4 C 1.53194 * 109.58459 * 239.71394 * 2 1 3 5 5 C 1.53042 * 109.31227 * 185.43249 * 4 2 1 6 6 H 1.08998 * 109.46771 * 301.35014 * 5 4 2 7 7 N 1.46498 * 109.46195 * 181.37528 * 5 4 2 8 8 C 1.34781 * 120.00297 * 154.97630 * 7 5 4 9 9 O 1.21549 * 119.99624 * 359.97438 * 8 7 5 10 10 C 1.47836 * 120.00034 * 179.97438 * 8 7 5 11 11 C 1.40024 * 120.56080 * 328.08886 * 10 8 7 12 12 C 1.38355 * 118.28788 * 179.73437 * 11 10 8 13 13 C 1.38362 * 119.30341 * 0.55911 * 12 11 10 14 14 N 1.31930 * 121.07344 * 359.70058 * 13 12 11 15 15 C 1.31684 * 121.88313 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.71498 * 180.02562 * 15 14 13 17 17 F 1.39897 * 109.47210 * 13.15690 * 16 15 14 18 18 F 1.39895 * 109.47356 * 133.16273 * 16 15 14 19 19 C 1.53043 * 109.53607 * 61.36895 * 5 4 2 20 20 C 1.53186 * 109.31415 * 298.63627 * 19 5 4 21 21 N 1.46924 * 109.70410 * 120.35844 * 2 1 3 22 22 C 1.36940 * 120.63291 * 353.44240 * 21 2 1 23 23 H 1.08002 * 119.99776 * 32.11007 * 22 21 2 24 24 C 1.38813 * 120.00201 * 212.11207 * 22 21 2 25 25 N 1.31621 * 119.99592 * 10.74777 * 24 22 21 26 26 Si 1.86802 * 119.99988 * 190.74074 * 24 22 21 27 27 H 1.48498 * 109.46569 * 60.00438 * 26 24 22 28 28 H 1.48497 * 109.46720 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47189 * 300.00217 * 26 24 22 30 30 H 1.09005 * 109.47389 * 180.28251 * 1 2 3 31 31 H 1.09001 * 109.47212 * 300.28268 * 1 2 3 32 32 H 1.09004 * 109.47400 * 60.28184 * 1 2 3 33 33 H 1.09007 * 109.49688 * 65.48958 * 4 2 1 34 34 H 1.08995 * 109.50264 * 305.38519 * 4 2 1 35 35 H 0.97005 * 119.99934 * 334.97581 * 7 5 4 36 36 H 1.07994 * 120.85506 * 0.02562 * 11 10 8 37 37 H 1.07996 * 120.34986 * 180.26201 * 12 11 10 38 38 H 1.07993 * 119.46090 * 179.72293 * 13 12 11 39 39 H 1.09004 * 109.46670 * 253.15616 * 16 15 14 40 40 H 1.09007 * 109.49762 * 58.58416 * 19 5 4 41 41 H 1.09001 * 109.50197 * 178.67963 * 19 5 4 42 42 H 1.09006 * 109.58337 * 294.84464 * 20 19 5 43 43 H 1.09001 * 109.70472 * 174.49204 * 20 19 5 44 44 H 0.97000 * 119.99322 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0434 -0.7279 -1.2463 5 6 3.5677 -0.8434 -1.1730 6 1 4.0045 0.1527 -1.1022 7 7 4.0653 -1.5099 -2.3789 8 6 5.3285 -1.2933 -2.7962 9 8 6.0546 -0.5446 -2.1721 10 6 5.8307 -1.9664 -4.0128 11 6 5.3668 -3.2397 -4.3650 12 6 5.8645 -3.8236 -5.5163 13 6 6.8042 -3.1423 -6.2694 14 7 7.2271 -1.9454 -5.9100 15 6 6.7789 -1.3457 -4.8267 16 6 7.2954 0.0224 -4.4623 17 9 7.9896 0.5636 -5.5496 18 9 6.2199 0.8548 -4.1345 19 6 3.9603 -1.6609 0.0598 20 6 3.4684 -0.9437 1.3210 21 7 2.0253 -0.6991 1.1935 22 6 1.1585 -1.1144 2.1689 23 1 0.1558 -1.4183 1.9066 24 6 1.5685 -1.1449 3.4948 25 7 2.7051 -0.5813 3.8452 26 14 0.5070 -1.9857 4.7816 27 1 0.3382 -3.4174 4.4253 28 1 1.1623 -1.8796 6.1099 29 1 -0.8234 -1.3280 4.8325 30 1 -0.3634 -1.0277 0.0051 31 1 -0.3634 0.5182 0.8874 32 1 -0.3634 0.5095 -0.8925 33 1 1.7637 -0.1655 -2.1372 34 1 1.6049 -1.7247 -1.2921 35 1 3.4857 -2.1072 -2.8772 36 1 4.6358 -3.7509 -3.7561 37 1 5.5265 -4.8029 -5.8215 38 1 7.1977 -3.5976 -7.1661 39 1 7.9660 -0.0585 -3.6068 40 1 3.5035 -2.6489 0.0018 41 1 5.0448 -1.7627 0.0987 42 1 3.9920 0.0063 1.4287 43 1 3.6578 -1.5664 2.1953 44 1 2.9917 -0.6029 4.7716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947527113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:15 Heat of formation + Delta-G solvation = -97.901985 kcal Electronic energy + Delta-G solvation = -30030.299524 eV Core-core repulsion = 25618.056874 eV Total energy + Delta-G solvation = -4412.242650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.05771 -48.07597 -41.83947 -40.50149 -39.14375 -36.20325 -34.43838 -33.90436 -33.38775 -32.72764 -31.17394 -28.23428 -27.76361 -26.73331 -25.63426 -23.89367 -23.42325 -22.63409 -21.53847 -21.00450 -19.22313 -18.72331 -18.57590 -18.42597 -18.09091 -17.44346 -17.08551 -16.72885 -16.22252 -15.98808 -15.78473 -15.63503 -15.35998 -14.98075 -14.92572 -14.86149 -14.54035 -14.45073 -14.32029 -14.17401 -13.97787 -13.49369 -13.31286 -12.91176 -12.72146 -12.69368 -12.61634 -12.50736 -12.34845 -12.11022 -11.85792 -11.70664 -11.51408 -11.42676 -11.12693 -11.10336 -10.67522 -10.53385 -10.39082 -10.04995 -8.58874 -7.81978 -5.32877 -0.56539 -0.03774 1.49255 1.50508 1.57206 1.64070 1.97477 2.28448 2.53620 2.54647 3.03257 3.23041 3.34861 3.47833 3.62525 3.68576 3.82756 3.87418 3.90722 4.07003 4.07782 4.25583 4.26769 4.36898 4.41433 4.62519 4.71788 4.77936 4.81265 4.82774 4.94877 4.96092 5.07803 5.09183 5.17611 5.40040 5.41348 5.46560 5.54109 5.56779 5.73699 5.74760 6.42803 6.46491 6.61513 7.10357 7.19684 7.89924 8.44023 9.24923 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.020406 B = 0.002692 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.806958 B =10397.312142 C =10667.959755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.159 3.841 3 H 0.008 0.992 4 C -0.118 4.118 5 C 0.163 3.837 6 H 0.056 0.944 7 N -0.697 5.697 8 C 0.556 3.444 9 O -0.565 6.565 10 C -0.164 4.164 11 C -0.041 4.041 12 C -0.138 4.138 13 C 0.117 3.883 14 N -0.485 5.485 15 C 0.083 3.917 16 C 0.322 3.678 17 F -0.197 7.197 18 F -0.200 7.200 19 C -0.129 4.129 20 C 0.184 3.816 21 N -0.603 5.603 22 C -0.250 4.250 23 H 0.079 0.921 24 C -0.055 4.055 25 N -0.942 5.942 26 Si 0.965 3.035 27 H -0.275 1.275 28 H -0.301 1.301 29 H -0.275 1.275 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.415 0.585 36 H 0.176 0.824 37 H 0.195 0.805 38 H 0.204 0.796 39 H 0.140 0.860 40 H 0.066 0.934 41 H 0.046 0.954 42 H -0.015 1.015 43 H 0.056 0.944 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.801 -9.803 -22.994 25.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.053 3.947 3 H 0.025 0.975 4 C -0.157 4.157 5 C 0.058 3.942 6 H 0.074 0.926 7 N -0.347 5.347 8 C 0.342 3.658 9 O -0.445 6.445 10 C -0.169 4.169 11 C -0.067 4.067 12 C -0.157 4.157 13 C -0.040 4.040 14 N -0.193 5.193 15 C -0.057 4.057 16 C 0.268 3.732 17 F -0.178 7.178 18 F -0.181 7.181 19 C -0.169 4.169 20 C 0.057 3.943 21 N -0.327 5.327 22 C -0.380 4.380 23 H 0.097 0.903 24 C -0.250 4.250 25 N -0.588 5.588 26 Si 0.794 3.206 27 H -0.200 1.200 28 H -0.228 1.228 29 H -0.201 1.201 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.252 0.748 36 H 0.194 0.806 37 H 0.212 0.788 38 H 0.221 0.779 39 H 0.157 0.843 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.003 0.997 43 H 0.074 0.926 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.946 -8.781 -22.925 25.043 hybrid contribution -0.823 -0.322 1.685 1.903 sum 4.123 -9.104 -21.240 23.474 Atomic orbital electron populations 1.21699 0.93838 1.01788 1.01033 1.20625 0.94719 0.92795 0.86571 0.97475 1.22189 0.92326 1.02478 0.98751 1.20715 0.95038 0.95318 0.83105 0.92601 1.45866 1.12652 1.48192 1.28003 1.18367 0.82528 0.80912 0.83978 1.90793 1.57241 1.38297 1.58151 1.20637 1.00765 0.98624 0.96913 1.22230 0.96824 0.91275 0.96328 1.22761 0.96241 1.03058 0.93595 1.23780 0.92353 0.88121 0.99720 1.67426 1.25827 1.12377 1.13718 1.21585 0.94856 0.96423 0.92802 1.20293 0.83050 0.82420 0.87475 1.92982 1.79336 1.87323 1.58192 1.93011 1.58250 1.73826 1.93015 1.22305 0.99170 0.99669 0.95743 1.20449 0.83641 0.95407 0.94808 1.44389 1.02591 1.65554 1.20146 1.19492 0.96597 1.35762 0.86144 0.90331 1.25972 0.98864 1.00704 0.99413 1.70167 1.24344 1.47715 1.16604 0.85371 0.78354 0.78863 0.78025 1.20036 1.22768 1.20079 0.92389 0.94276 0.90584 0.89557 0.90080 0.74756 0.80646 0.78804 0.77925 0.84320 0.91497 0.93496 0.99729 0.92570 0.94433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 7.97 71.98 0.57 -3.69 16 2 C 0.16 6.22 3.49 44.97 0.16 6.37 16 3 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 4 C -0.12 -3.49 4.84 30.67 0.15 -3.35 16 5 C 0.16 5.31 2.42 45.02 0.11 5.42 16 6 H 0.06 2.20 7.57 -2.39 -0.02 2.18 16 7 N -0.70 -17.12 5.00 -445.29 -2.23 -19.35 16 8 C 0.56 15.55 6.55 86.78 0.57 16.12 16 9 O -0.57 -20.59 13.55 -3.87 -0.05 -20.65 16 10 C -0.16 -3.51 5.79 -19.99 -0.12 -3.62 16 11 C -0.04 -0.49 9.46 22.73 0.22 -0.27 16 12 C -0.14 -0.97 10.10 22.33 0.23 -0.74 16 13 C 0.12 1.30 11.17 84.71 0.95 2.25 16 14 N -0.48 -10.04 9.77 -182.84 -1.79 -11.83 16 15 C 0.08 1.99 6.60 42.89 0.28 2.28 16 16 C 0.32 8.82 4.59 71.24 0.33 9.15 16 17 F -0.20 -5.55 16.91 44.97 0.76 -4.78 16 18 F -0.20 -6.45 14.77 44.97 0.66 -5.79 16 19 C -0.13 -4.92 5.65 30.67 0.17 -4.74 16 20 C 0.18 9.06 5.25 86.36 0.45 9.51 16 21 N -0.60 -29.25 2.98 -675.24 -2.01 -31.26 16 22 C -0.25 -13.08 8.54 84.03 0.72 -12.36 16 23 H 0.08 3.88 6.30 -2.91 -0.02 3.87 16 24 C -0.05 -3.02 5.04 84.86 0.43 -2.59 16 25 N -0.94 -56.30 11.11 21.65 0.24 -56.06 16 26 Si 0.97 44.18 29.57 68.60 2.03 46.21 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 28 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 29 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 30 H 0.06 1.90 7.40 -2.38 -0.02 1.89 16 31 H 0.04 1.49 7.69 -2.39 -0.02 1.47 16 32 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 33 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.41 6.83 7.65 -92.70 -0.71 6.12 16 36 H 0.18 1.09 7.52 -2.91 -0.02 1.07 16 37 H 0.19 -0.34 8.06 -2.91 -0.02 -0.36 16 38 H 0.20 0.67 8.06 -2.91 -0.02 0.64 16 39 H 0.14 3.56 7.70 -2.39 -0.02 3.54 16 40 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 42 H -0.02 -0.85 8.14 -2.38 -0.02 -0.87 16 43 H 0.06 3.13 6.16 -2.39 -0.01 3.12 16 44 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -76.05 361.84 3.15 -72.90 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.33 Total: 10.89 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: 5.21 Total: 19.72 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -5.79 Total: -118.50 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.05 Total: -20.65 kcal Atomic # 9 Polarization: -12.00 SS G_CDS: 1.42 Total: -10.58 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -76.05 3.15 -72.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947527113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.006 kcal (2) G-P(sol) polarization free energy of solvation -76.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds