Wall clock time and date at job start Wed Apr 1 2020 00:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.70556 * 2 1 4 4 C 1.53195 * 109.58575 * 239.64882 * 2 1 3 5 5 C 1.53041 * 109.31327 * 294.84679 * 4 2 1 6 6 H 1.08998 * 109.45838 * 58.65288 * 5 4 2 7 7 N 1.46499 * 109.46035 * 178.61649 * 5 4 2 8 8 C 1.34782 * 119.99748 * 204.99378 * 7 5 4 9 9 O 1.21552 * 119.99881 * 0.02562 * 8 7 5 10 10 C 1.47845 * 119.99906 * 179.97438 * 8 7 5 11 11 C 1.40025 * 120.55739 * 359.73142 * 10 8 7 12 12 C 1.38355 * 118.28388 * 179.73137 * 11 10 8 13 13 C 1.38346 * 119.30651 * 0.51851 * 12 11 10 14 14 N 1.31933 * 121.08008 * 359.74542 * 13 12 11 15 15 C 1.31696 * 121.87479 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.71309 * 179.97438 * 15 14 13 17 17 F 1.39901 * 109.46815 * 119.97911 * 16 15 14 18 18 F 1.39898 * 109.47017 * 239.97786 * 16 15 14 19 19 C 1.53048 * 109.53743 * 298.63536 * 5 4 2 20 20 C 1.53187 * 109.31057 * 61.36374 * 19 5 4 21 21 N 1.46922 * 109.59071 * 120.36079 * 2 1 3 22 22 C 1.36940 * 120.62818 * 246.20544 * 21 2 1 23 23 H 1.08001 * 119.99882 * 332.27213 * 22 21 2 24 24 C 1.38813 * 120.00112 * 152.27876 * 22 21 2 25 25 N 1.31622 * 119.99793 * 342.60107 * 24 22 21 26 26 Si 1.86802 * 120.00213 * 162.59527 * 24 22 21 27 27 H 1.48504 * 109.46808 * 94.34958 * 26 24 22 28 28 H 1.48494 * 109.46994 * 214.34927 * 26 24 22 29 29 H 1.48502 * 109.46978 * 334.34983 * 26 24 22 30 30 H 1.09003 * 109.47157 * 180.35236 * 1 2 3 31 31 H 1.08993 * 109.47257 * 300.35511 * 1 2 3 32 32 H 1.09007 * 109.47288 * 60.35526 * 1 2 3 33 33 H 1.09002 * 109.49808 * 174.89393 * 4 2 1 34 34 H 1.08998 * 109.52705 * 54.81424 * 4 2 1 35 35 H 0.96998 * 120.00287 * 25.00040 * 7 5 4 36 36 H 1.08002 * 120.85374 * 359.97438 * 11 10 8 37 37 H 1.08004 * 120.34590 * 180.26255 * 12 11 10 38 38 H 1.08000 * 119.46498 * 179.76587 * 13 12 11 39 39 H 1.08993 * 109.47106 * 359.97438 * 16 15 14 40 40 H 1.08999 * 109.49792 * 181.31169 * 19 5 4 41 41 H 1.09002 * 109.49505 * 301.41491 * 19 5 4 42 42 H 1.09008 * 109.58699 * 185.57845 * 20 19 5 43 43 H 1.09001 * 109.70817 * 65.22128 * 20 19 5 44 44 H 0.97005 * 119.99678 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 1.6414 -2.2040 -1.1703 6 1 0.5564 -2.2814 -1.0994 7 7 2.1023 -2.8976 -2.3756 8 6 1.4750 -4.0159 -2.7910 9 8 0.5266 -4.4487 -2.1658 10 6 1.9398 -4.7156 -4.0076 11 6 3.0268 -4.2236 -4.7404 12 6 3.4257 -4.9188 -5.8682 13 6 2.7377 -6.0605 -6.2385 14 7 1.7132 -6.4977 -5.5316 15 6 1.2993 -5.8743 -4.4479 16 6 0.1230 -6.4164 -3.6774 17 9 0.5221 -6.7231 -2.3721 18 9 -0.8933 -5.4557 -3.6408 19 6 2.2800 -2.8464 0.0633 20 6 1.7692 -2.1411 1.3235 21 7 2.0225 -0.6996 1.1943 22 6 2.7044 -0.0209 2.1689 23 1 3.2698 0.8638 1.9159 24 6 2.6689 -0.4701 3.4819 25 7 1.7354 -1.3163 3.8629 26 14 3.9459 0.1261 4.7079 27 1 3.4101 1.2943 5.4520 28 1 4.2630 -0.9659 5.6629 29 1 5.1796 0.5241 3.9835 30 1 -0.3634 -1.0277 0.0063 31 1 -0.3633 0.5193 0.8867 32 1 -0.3634 0.5083 -0.8932 33 1 3.1296 -0.6502 -1.2914 34 1 1.6079 -0.2785 -2.1372 35 1 2.8589 -2.5522 -2.8746 36 1 3.5431 -3.3269 -4.4309 37 1 4.2628 -4.5714 -6.4556 38 1 3.0445 -6.6029 -7.1206 39 1 -0.2467 -7.3180 -4.1657 40 1 2.0122 -3.9022 0.1035 41 1 3.3639 -2.7474 0.0050 42 1 2.2945 -2.5276 2.1970 43 1 0.6989 -2.3155 1.4341 44 1 1.7109 -1.6305 4.7803 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947527114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:20 Heat of formation + Delta-G solvation = -71.311738 kcal Electronic energy + Delta-G solvation = -30442.172309 eV Core-core repulsion = 26031.082698 eV Total energy + Delta-G solvation = -4411.089610 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.75484 -46.73403 -40.96611 -39.38726 -37.68195 -34.67607 -33.41612 -32.58127 -32.30146 -30.72019 -29.51920 -27.24205 -26.74163 -25.04913 -24.22419 -22.84145 -21.97012 -21.76400 -20.54335 -18.81558 -18.10251 -17.72471 -17.42736 -17.05384 -16.57818 -16.39043 -15.64340 -15.40063 -15.11596 -14.89536 -14.50963 -14.03513 -13.82288 -13.73818 -13.55062 -13.45845 -13.34183 -13.05982 -13.02846 -12.61700 -12.48263 -12.30997 -12.21111 -11.42279 -11.39269 -11.07551 -10.93199 -10.78707 -10.60571 -10.47706 -10.35458 -10.28694 -10.19997 -10.01479 -9.76927 -9.71746 -9.70638 -9.35049 -8.74845 -8.40580 -6.68561 -5.77830 -3.20224 0.14218 0.56646 2.69374 3.09835 3.16378 3.37631 3.42628 3.45089 3.46742 3.98705 4.17119 4.23550 4.32934 4.49053 4.54109 4.77061 4.89745 5.05428 5.07739 5.28649 5.37765 5.39095 5.40933 5.50048 5.59288 5.77283 5.93532 6.01529 6.06283 6.25251 6.28848 6.40490 6.46093 6.57878 6.64825 6.80706 6.85758 6.94916 7.16400 7.23144 7.39516 7.57148 7.71696 7.80553 8.25294 8.46045 9.21824 9.85457 10.42055 11.30369 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018734 B = 0.002921 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.250302 B = 9585.072133 C = 9860.594229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.171 3.829 3 H 0.065 0.935 4 C -0.133 4.133 5 C 0.151 3.849 6 H 0.089 0.911 7 N -0.715 5.715 8 C 0.546 3.454 9 O -0.503 6.503 10 C -0.142 4.142 11 C -0.047 4.047 12 C -0.158 4.158 13 C 0.117 3.883 14 N -0.463 5.463 15 C 0.100 3.900 16 C 0.338 3.662 17 F -0.180 7.180 18 F -0.181 7.181 19 C -0.147 4.147 20 C 0.174 3.826 21 N -0.585 5.585 22 C -0.254 4.254 23 H 0.065 0.935 24 C 0.004 3.996 25 N -0.899 5.899 26 Si 0.900 3.100 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.279 1.279 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.391 0.609 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.169 0.831 39 H 0.121 0.879 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.022 0.978 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.038 -7.731 -22.342 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.084 0.916 4 C -0.172 4.172 5 C 0.048 3.952 6 H 0.107 0.893 7 N -0.366 5.366 8 C 0.330 3.670 9 O -0.378 6.378 10 C -0.147 4.147 11 C -0.073 4.073 12 C -0.178 4.178 13 C -0.041 4.041 14 N -0.171 5.171 15 C -0.041 4.041 16 C 0.283 3.717 17 F -0.161 7.161 18 F -0.162 7.162 19 C -0.187 4.187 20 C 0.048 3.952 21 N -0.307 5.307 22 C -0.384 4.384 23 H 0.083 0.917 24 C -0.195 4.195 25 N -0.543 5.543 26 Si 0.730 3.270 27 H -0.215 1.215 28 H -0.216 1.216 29 H -0.205 1.205 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.225 0.775 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.186 0.814 39 H 0.138 0.862 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.107 0.893 43 H 0.041 0.959 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.865 -8.837 -21.899 23.688 hybrid contribution 1.581 1.263 0.679 2.135 sum 3.446 -7.574 -21.220 22.793 Atomic orbital electron populations 1.22305 0.98639 1.01238 1.00045 1.20425 0.91819 0.95053 0.86466 0.91634 1.22314 1.01114 0.94080 0.99738 1.21176 1.00083 0.91213 0.82724 0.89315 1.46199 1.34393 1.26659 1.29354 1.17938 0.83703 0.81428 0.83955 1.90913 1.26578 1.64500 1.55806 1.21043 0.98130 0.97497 0.98042 1.21872 0.93501 0.98789 0.93186 1.22261 1.01463 0.96558 0.97528 1.22989 0.89855 0.93445 0.97788 1.67347 1.13724 1.31164 1.04911 1.21932 0.96813 0.92071 0.93259 1.19789 0.82069 0.89926 0.79948 1.93073 1.91118 1.93109 1.38775 1.93056 1.59958 1.66768 1.96465 1.22572 1.00050 0.99341 0.96727 1.20741 0.97845 0.82819 0.93824 1.44180 1.63792 1.03466 1.19231 1.19147 1.22148 1.10301 0.86766 0.91698 1.25047 0.97702 0.99980 0.96790 1.70043 1.31689 1.35635 1.16896 0.86320 0.81605 0.77855 0.81202 1.21501 1.21596 1.20487 0.93114 0.92595 0.94513 0.91916 0.92585 0.77453 0.83584 0.83358 0.81387 0.86161 0.92725 0.92743 0.89288 0.95948 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 9.02 37.15 0.34 -2.79 16 2 C 0.17 3.40 3.29 -67.60 -0.22 3.18 16 3 H 0.07 1.30 7.93 -51.93 -0.41 0.88 16 4 C -0.13 -2.15 5.02 -26.61 -0.13 -2.28 16 5 C 0.15 2.59 2.21 -67.88 -0.15 2.44 16 6 H 0.09 1.73 5.94 -51.93 -0.31 1.42 16 7 N -0.72 -9.93 5.03 -54.71 -0.28 -10.21 16 8 C 0.55 8.37 7.55 -12.33 -0.09 8.28 16 9 O -0.50 -9.59 11.00 5.32 0.06 -9.53 16 10 C -0.14 -1.73 5.85 -104.82 -0.61 -2.35 16 11 C -0.05 -0.39 9.65 -38.87 -0.37 -0.76 16 12 C -0.16 -0.97 10.10 -39.50 -0.40 -1.37 16 13 C 0.12 0.83 11.17 -17.47 -0.20 0.63 16 14 N -0.46 -4.83 10.24 -9.14 -0.09 -4.92 16 15 C 0.10 1.24 6.31 -82.17 -0.52 0.72 16 16 C 0.34 4.50 5.02 36.01 0.18 4.68 16 17 F -0.18 -2.91 15.04 2.25 0.03 -2.88 16 18 F -0.18 -2.86 15.03 2.25 0.03 -2.82 16 19 C -0.15 -2.92 5.65 -26.61 -0.15 -3.07 16 20 C 0.17 4.19 4.89 -3.71 -0.02 4.17 16 21 N -0.59 -14.18 2.70 -164.78 -0.45 -14.63 16 22 C -0.25 -6.81 9.58 -15.06 -0.14 -6.95 16 23 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16 24 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 25 N -0.90 -26.04 11.19 55.49 0.62 -25.41 16 26 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 30 H 0.05 1.02 5.72 -51.93 -0.30 0.72 16 31 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.39 4.08 6.71 -40.82 -0.27 3.81 16 36 H 0.15 0.82 6.52 -52.49 -0.34 0.48 16 37 H 0.15 0.39 8.06 -52.48 -0.42 -0.03 16 38 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 39 H 0.12 1.17 8.11 -51.93 -0.42 0.75 16 40 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.09 2.41 6.04 -51.92 -0.31 2.10 16 43 H 0.02 0.58 7.49 -51.93 -0.39 0.19 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 356.98 15.07 5.38 5.38 Total: -1.00 -33.48 356.98 -7.99 -41.47 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.69 Total: 2.55 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -2.58 Total: 4.54 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.19 Total: -55.18 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.06 Total: -9.53 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.07 Total: -5.70 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.48 -7.99 -41.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947527114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.846 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds