Wall clock time and date at job start Wed Apr 1 2020 00:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.70556 * 2 1 4 4 C 1.53195 * 109.58575 * 239.64882 * 2 1 3 5 5 C 1.53041 * 109.31327 * 294.84679 * 4 2 1 6 6 H 1.08998 * 109.45838 * 58.65288 * 5 4 2 7 7 N 1.46499 * 109.46035 * 178.61649 * 5 4 2 8 8 C 1.34782 * 119.99748 * 204.99378 * 7 5 4 9 9 O 1.21552 * 119.99881 * 0.02562 * 8 7 5 10 10 C 1.47845 * 119.99906 * 179.97438 * 8 7 5 11 11 C 1.40025 * 120.55739 * 359.73142 * 10 8 7 12 12 C 1.38355 * 118.28388 * 179.73137 * 11 10 8 13 13 C 1.38346 * 119.30651 * 0.51851 * 12 11 10 14 14 N 1.31933 * 121.08008 * 359.74542 * 13 12 11 15 15 C 1.31696 * 121.87479 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.71309 * 179.97438 * 15 14 13 17 17 F 1.39901 * 109.46815 * 119.97911 * 16 15 14 18 18 F 1.39898 * 109.47017 * 239.97786 * 16 15 14 19 19 C 1.53048 * 109.53743 * 298.63536 * 5 4 2 20 20 C 1.53187 * 109.31057 * 61.36374 * 19 5 4 21 21 N 1.46922 * 109.59071 * 120.36079 * 2 1 3 22 22 C 1.36940 * 120.62818 * 246.20544 * 21 2 1 23 23 H 1.08001 * 119.99882 * 332.27213 * 22 21 2 24 24 C 1.38813 * 120.00112 * 152.27876 * 22 21 2 25 25 N 1.31622 * 119.99793 * 342.60107 * 24 22 21 26 26 Si 1.86802 * 120.00213 * 162.59527 * 24 22 21 27 27 H 1.48504 * 109.46808 * 94.34958 * 26 24 22 28 28 H 1.48494 * 109.46994 * 214.34927 * 26 24 22 29 29 H 1.48502 * 109.46978 * 334.34983 * 26 24 22 30 30 H 1.09003 * 109.47157 * 180.35236 * 1 2 3 31 31 H 1.08993 * 109.47257 * 300.35511 * 1 2 3 32 32 H 1.09007 * 109.47288 * 60.35526 * 1 2 3 33 33 H 1.09002 * 109.49808 * 174.89393 * 4 2 1 34 34 H 1.08998 * 109.52705 * 54.81424 * 4 2 1 35 35 H 0.96998 * 120.00287 * 25.00040 * 7 5 4 36 36 H 1.08002 * 120.85374 * 359.97438 * 11 10 8 37 37 H 1.08004 * 120.34590 * 180.26255 * 12 11 10 38 38 H 1.08000 * 119.46498 * 179.76587 * 13 12 11 39 39 H 1.08993 * 109.47106 * 359.97438 * 16 15 14 40 40 H 1.08999 * 109.49792 * 181.31169 * 19 5 4 41 41 H 1.09002 * 109.49505 * 301.41491 * 19 5 4 42 42 H 1.09008 * 109.58699 * 185.57845 * 20 19 5 43 43 H 1.09001 * 109.70817 * 65.22128 * 20 19 5 44 44 H 0.97005 * 119.99678 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 1.6414 -2.2040 -1.1703 6 1 0.5564 -2.2814 -1.0994 7 7 2.1023 -2.8976 -2.3756 8 6 1.4750 -4.0159 -2.7910 9 8 0.5266 -4.4487 -2.1658 10 6 1.9398 -4.7156 -4.0076 11 6 3.0268 -4.2236 -4.7404 12 6 3.4257 -4.9188 -5.8682 13 6 2.7377 -6.0605 -6.2385 14 7 1.7132 -6.4977 -5.5316 15 6 1.2993 -5.8743 -4.4479 16 6 0.1230 -6.4164 -3.6774 17 9 0.5221 -6.7231 -2.3721 18 9 -0.8933 -5.4557 -3.6408 19 6 2.2800 -2.8464 0.0633 20 6 1.7692 -2.1411 1.3235 21 7 2.0225 -0.6996 1.1943 22 6 2.7044 -0.0209 2.1689 23 1 3.2698 0.8638 1.9159 24 6 2.6689 -0.4701 3.4819 25 7 1.7354 -1.3163 3.8629 26 14 3.9459 0.1261 4.7079 27 1 3.4101 1.2943 5.4520 28 1 4.2630 -0.9659 5.6629 29 1 5.1796 0.5241 3.9835 30 1 -0.3634 -1.0277 0.0063 31 1 -0.3633 0.5193 0.8867 32 1 -0.3634 0.5083 -0.8932 33 1 3.1296 -0.6502 -1.2914 34 1 1.6079 -0.2785 -2.1372 35 1 2.8589 -2.5522 -2.8746 36 1 3.5431 -3.3269 -4.4309 37 1 4.2628 -4.5714 -6.4556 38 1 3.0445 -6.6029 -7.1206 39 1 -0.2467 -7.3180 -4.1657 40 1 2.0122 -3.9022 0.1035 41 1 3.3639 -2.7474 0.0050 42 1 2.2945 -2.5276 2.1970 43 1 0.6989 -2.3155 1.4341 44 1 1.7109 -1.6305 4.7803 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947527114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:19 Heat of formation + Delta-G solvation = -93.879086 kcal Electronic energy + Delta-G solvation = -30443.150902 eV Core-core repulsion = 26031.082698 eV Total energy + Delta-G solvation = -4412.068204 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.84857 -47.86151 -41.80901 -40.54883 -39.18855 -36.13405 -34.58828 -33.84604 -33.24515 -32.37672 -31.20994 -28.67216 -27.83138 -26.28747 -25.60860 -23.99167 -23.57022 -23.00613 -21.76744 -20.23716 -19.31932 -18.75892 -18.54856 -18.14281 -18.07484 -17.51794 -16.90731 -16.45864 -16.25056 -16.10159 -15.84579 -15.52537 -15.42289 -14.89487 -14.75971 -14.63628 -14.32243 -14.24849 -14.16169 -14.12465 -14.06853 -13.86268 -13.23316 -13.15525 -12.93681 -12.62720 -12.58596 -12.35953 -12.26664 -12.05638 -12.01188 -11.77528 -11.50181 -11.23334 -11.13003 -11.05798 -10.66668 -10.55482 -10.42334 -10.01030 -8.69014 -7.85235 -5.30231 -0.60019 -0.05006 1.47145 1.48993 1.58680 1.77392 1.99227 2.36004 2.52415 2.60452 3.21692 3.29843 3.32756 3.50727 3.63001 3.69461 3.84226 3.88259 4.05176 4.07667 4.11781 4.26472 4.28268 4.37864 4.43874 4.51298 4.69965 4.73671 4.81202 4.83837 4.88383 4.95261 5.07507 5.12090 5.16093 5.32719 5.40927 5.43639 5.47978 5.55790 5.68741 5.75412 6.40969 6.46188 6.59978 7.15776 7.16527 7.88012 8.40456 9.21497 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018734 B = 0.002921 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.250302 B = 9585.072133 C = 9860.594229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.161 3.839 3 H 0.073 0.927 4 C -0.117 4.117 5 C 0.164 3.836 6 H 0.062 0.938 7 N -0.701 5.701 8 C 0.541 3.459 9 O -0.551 6.551 10 C -0.168 4.168 11 C -0.043 4.043 12 C -0.138 4.138 13 C 0.119 3.881 14 N -0.480 5.480 15 C 0.080 3.920 16 C 0.324 3.676 17 F -0.203 7.203 18 F -0.201 7.201 19 C -0.131 4.131 20 C 0.186 3.814 21 N -0.599 5.599 22 C -0.257 4.257 23 H 0.074 0.926 24 C -0.054 4.054 25 N -0.937 5.937 26 Si 0.966 3.034 27 H -0.288 1.288 28 H -0.298 1.298 29 H -0.265 1.265 30 H 0.031 0.969 31 H 0.028 0.972 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.413 0.587 36 H 0.175 0.825 37 H 0.196 0.804 38 H 0.209 0.791 39 H 0.151 0.849 40 H 0.039 0.961 41 H 0.062 0.938 42 H 0.052 0.948 43 H -0.012 1.012 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.014 -6.676 -26.423 27.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.091 0.909 4 C -0.156 4.156 5 C 0.059 3.941 6 H 0.080 0.920 7 N -0.353 5.353 8 C 0.328 3.672 9 O -0.429 6.429 10 C -0.174 4.174 11 C -0.069 4.069 12 C -0.157 4.157 13 C -0.038 4.038 14 N -0.189 5.189 15 C -0.059 4.059 16 C 0.269 3.731 17 F -0.185 7.185 18 F -0.183 7.183 19 C -0.171 4.171 20 C 0.059 3.941 21 N -0.322 5.322 22 C -0.387 4.387 23 H 0.092 0.908 24 C -0.249 4.249 25 N -0.583 5.583 26 Si 0.794 3.206 27 H -0.215 1.215 28 H -0.225 1.225 29 H -0.189 1.189 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.251 0.749 36 H 0.192 0.808 37 H 0.213 0.787 38 H 0.225 0.775 39 H 0.168 0.832 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.006 0.994 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.875 -7.751 -26.043 27.606 hybrid contribution 0.665 0.904 1.797 2.119 sum 5.540 -6.847 -24.246 25.796 Atomic orbital electron populations 1.22197 0.98418 1.00156 1.00564 1.20712 0.92023 0.95613 0.86285 0.90873 1.22141 1.02124 0.92414 0.98941 1.20745 0.98322 0.92182 0.82822 0.91975 1.45835 1.34950 1.26256 1.28221 1.18510 0.82923 0.81206 0.84599 1.90894 1.28764 1.65700 1.57566 1.20833 1.00589 0.98172 0.97800 1.22255 0.91886 0.99635 0.93124 1.22782 1.01559 0.95041 0.96310 1.23819 0.88266 0.93802 0.97955 1.67368 1.15312 1.31555 1.04619 1.21695 0.97008 0.92879 0.94349 1.20314 0.82757 0.90771 0.79221 1.93008 1.91399 1.93282 1.40773 1.92996 1.61013 1.67741 1.96504 1.22309 1.00355 0.98096 0.96341 1.20383 0.95322 0.83778 0.94575 1.44392 1.64133 1.03499 1.20131 1.19554 1.21734 1.10113 0.87330 0.90803 1.25832 0.99567 1.00767 0.98758 1.70224 1.33734 1.37599 1.16777 0.85286 0.79683 0.76826 0.78790 1.21462 1.22465 1.18910 0.94970 0.95303 0.90674 0.90356 0.88890 0.74938 0.80779 0.78690 0.77457 0.83225 0.94230 0.91902 0.92958 0.99395 0.94378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.92 9.02 71.98 0.65 -5.27 16 2 C 0.16 6.23 3.29 44.97 0.15 6.37 16 3 H 0.07 2.74 7.93 -2.39 -0.02 2.72 16 4 C -0.12 -3.46 5.02 30.67 0.15 -3.30 16 5 C 0.16 5.52 2.21 45.02 0.10 5.62 16 6 H 0.06 2.49 5.94 -2.39 -0.01 2.47 16 7 N -0.70 -18.26 5.03 -445.26 -2.24 -20.50 16 8 C 0.54 16.51 7.55 86.79 0.65 17.17 16 9 O -0.55 -22.08 11.00 -3.88 -0.04 -22.12 16 10 C -0.17 -3.87 5.85 -19.99 -0.12 -3.98 16 11 C -0.04 -0.53 9.65 22.73 0.22 -0.31 16 12 C -0.14 -0.91 10.10 22.32 0.23 -0.68 16 13 C 0.12 1.15 11.17 84.70 0.95 2.10 16 14 N -0.48 -8.92 10.24 -182.84 -1.87 -10.79 16 15 C 0.08 1.93 6.31 42.89 0.27 2.21 16 16 C 0.32 8.98 5.02 71.24 0.36 9.34 16 17 F -0.20 -7.05 15.04 44.97 0.68 -6.37 16 18 F -0.20 -6.72 15.03 44.97 0.68 -6.04 16 19 C -0.13 -5.34 5.65 30.67 0.17 -5.17 16 20 C 0.19 9.45 4.89 86.36 0.42 9.87 16 21 N -0.60 -29.53 2.70 -675.23 -1.82 -31.35 16 22 C -0.26 -13.88 9.58 84.03 0.81 -13.08 16 23 H 0.07 3.80 7.89 -2.91 -0.02 3.77 16 24 C -0.05 -3.04 4.91 84.86 0.42 -2.63 16 25 N -0.94 -56.96 11.19 21.65 0.24 -56.72 16 26 Si 0.97 45.01 29.59 68.60 2.03 47.04 16 27 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 28 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 29 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 30 H 0.03 1.33 5.72 -2.39 -0.01 1.32 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.41 7.09 6.71 -92.71 -0.62 6.47 16 36 H 0.17 1.02 6.52 -2.91 -0.02 1.00 16 37 H 0.20 -0.47 8.06 -2.91 -0.02 -0.50 16 38 H 0.21 0.26 8.06 -2.91 -0.02 0.23 16 39 H 0.15 3.01 8.11 -2.39 -0.02 2.99 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.05 3.02 6.04 -2.38 -0.01 3.00 16 43 H -0.01 -0.68 7.49 -2.39 -0.02 -0.70 16 44 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 Total: -1.00 -80.45 356.98 3.49 -76.96 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.42 Total: 11.63 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 5.43 Total: 18.25 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -5.70 Total: -119.36 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.04 Total: -22.12 kcal Atomic # 9 Polarization: -13.76 SS G_CDS: 1.35 Total: -12.41 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -80.45 3.49 -76.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947527114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.920 kcal (2) G-P(sol) polarization free energy of solvation -80.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds