Wall clock time and date at job start Wed Apr 1 2020 00:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.70206 * 2 1 4 4 C 1.53192 * 109.58991 * 120.36027 * 2 1 3 5 5 C 1.53044 * 109.31488 * 174.42591 * 4 2 1 6 6 H 1.09004 * 109.45826 * 58.65368 * 5 4 2 7 7 N 1.46497 * 109.45860 * 178.61223 * 5 4 2 8 8 C 1.34775 * 119.99526 * 205.06367 * 7 5 4 9 9 O 1.21552 * 120.00305 * 0.02562 * 8 7 5 10 10 C 1.47846 * 119.99935 * 180.02562 * 8 7 5 11 11 C 1.40026 * 120.55461 * 0.02562 * 10 8 7 12 12 C 1.38357 * 118.28657 * 179.97438 * 11 10 8 13 13 C 1.38353 * 119.30551 * 0.02562 * 12 11 10 14 14 N 1.31936 * 121.07503 * 359.97297 * 13 12 11 15 15 C 1.31688 * 121.87894 * 359.75089 * 14 13 12 16 16 C 1.50705 * 119.71694 * 180.26773 * 15 14 13 17 17 F 1.39900 * 109.47206 * 120.26632 * 16 15 14 18 18 F 1.39897 * 109.46925 * 240.27348 * 16 15 14 19 19 C 1.53043 * 109.53554 * 298.63475 * 5 4 2 20 20 C 1.53190 * 109.31272 * 61.36418 * 19 5 4 21 21 N 1.46923 * 109.58887 * 239.65066 * 2 1 3 22 22 C 1.36936 * 120.63101 * 6.58068 * 21 2 1 23 23 H 1.08004 * 119.99659 * 330.18020 * 22 21 2 24 24 C 1.38813 * 120.00636 * 150.18150 * 22 21 2 25 25 N 1.31625 * 119.99447 * 344.49475 * 24 22 21 26 26 Si 1.86792 * 120.00223 * 164.48844 * 24 22 21 27 27 H 1.48503 * 109.47209 * 90.00511 * 26 24 22 28 28 H 1.48505 * 109.47294 * 210.00392 * 26 24 22 29 29 H 1.48496 * 109.47511 * 330.00126 * 26 24 22 30 30 H 1.08998 * 109.46970 * 299.63781 * 1 2 3 31 31 H 1.09001 * 109.47635 * 59.64160 * 1 2 3 32 32 H 1.09004 * 109.47024 * 179.64155 * 1 2 3 33 33 H 1.08994 * 109.49915 * 54.47160 * 4 2 1 34 34 H 1.09006 * 109.52106 * 294.38965 * 4 2 1 35 35 H 0.96997 * 120.00251 * 25.06826 * 7 5 4 36 36 H 1.07998 * 120.85820 * 359.97438 * 11 10 8 37 37 H 1.08001 * 120.34725 * 180.02562 * 12 11 10 38 38 H 1.07992 * 119.46391 * 180.02562 * 13 12 11 39 39 H 1.09005 * 109.46588 * 0.27044 * 16 15 14 40 40 H 1.09000 * 109.49776 * 301.41368 * 19 5 4 41 41 H 1.09001 * 109.49800 * 181.31696 * 19 5 4 42 42 H 1.08997 * 109.58984 * 65.15567 * 20 19 5 43 43 H 1.09004 * 109.58613 * 185.57580 * 20 19 5 44 44 H 0.96997 * 119.99477 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7295 1.2453 5 6 3.5676 -0.8480 1.1701 6 1 4.0061 0.1475 1.0993 7 7 4.0653 -1.5158 2.3753 8 6 5.3291 -1.3011 2.7913 9 8 6.0557 -0.5530 2.1669 10 6 5.8316 -1.9754 4.0073 11 6 5.0047 -2.8398 4.7351 12 6 5.5234 -3.4463 5.8654 13 6 6.8295 -3.1815 6.2371 14 7 7.5855 -2.3622 5.5316 15 6 7.1393 -1.7654 4.4459 16 6 8.0472 -0.8433 3.6735 17 9 8.1972 -1.3226 2.3677 18 9 7.4890 0.4390 3.6385 19 6 3.9570 -1.6656 -0.0637 20 6 3.4651 -0.9467 -1.3238 21 7 2.0225 -0.6994 -1.1945 22 6 1.1537 -1.1133 -2.1686 23 1 0.1398 -1.3805 -1.9098 24 6 1.5759 -1.1894 -3.4888 25 7 2.6865 -0.5883 -3.8601 26 14 0.5683 -2.1448 -4.7381 27 1 -0.4259 -1.2396 -5.3687 28 1 1.4684 -2.6960 -5.7828 29 1 -0.1388 -3.2585 -4.0563 30 1 -0.3633 0.5082 0.8932 31 1 -0.3634 0.5194 -0.8867 32 1 -0.3633 -1.0277 -0.0064 33 1 1.6031 -1.7254 1.2912 34 1 1.7660 -0.1674 2.1371 35 1 3.4853 -2.1125 2.8737 36 1 3.9884 -3.0283 4.4224 37 1 4.9150 -4.1194 6.4514 38 1 7.2370 -3.6539 7.1186 39 1 9.0220 -0.8021 4.1596 40 1 3.4984 -2.6527 -0.0055 41 1 5.0413 -1.7694 -0.1039 42 1 3.9903 0.0023 -1.4318 43 1 3.6519 -1.5714 -2.1973 44 1 2.9818 -0.6418 -4.7825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947527115.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:24 Heat of formation + Delta-G solvation = -71.379789 kcal Electronic energy + Delta-G solvation = -30287.280010 eV Core-core repulsion = 25876.187448 eV Total energy + Delta-G solvation = -4411.092561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -48.75511 -46.73485 -40.96522 -39.34800 -37.60193 -34.75306 -33.42823 -32.54559 -32.30300 -31.16352 -29.49217 -27.11322 -26.35620 -25.19927 -24.52024 -22.82963 -22.00101 -21.30771 -20.16934 -19.38261 -18.31528 -17.71460 -17.39358 -17.05434 -16.39678 -16.26025 -15.59830 -15.37837 -15.13637 -15.07592 -14.56563 -14.06196 -13.88430 -13.73291 -13.53594 -13.45364 -13.34414 -13.20939 -13.05350 -12.80105 -12.64390 -12.31700 -11.60560 -11.40952 -11.23321 -11.10179 -10.94565 -10.89212 -10.65036 -10.47569 -10.33940 -10.29300 -10.12109 -10.04945 -9.83872 -9.73589 -9.70859 -9.37225 -8.74190 -8.41924 -6.62625 -5.76238 -3.20645 0.14043 0.56517 2.69150 3.09149 3.16204 3.37862 3.42400 3.45125 3.46372 3.98573 4.17036 4.23436 4.32713 4.49713 4.53841 4.76944 4.89676 5.05407 5.07719 5.26922 5.36518 5.39155 5.42957 5.49918 5.57387 5.75559 5.92952 5.99019 6.14463 6.21876 6.30398 6.39015 6.41204 6.49416 6.62988 6.80473 6.85830 7.02393 7.09354 7.22997 7.38711 7.56754 7.70651 7.83331 8.24886 8.48203 9.23306 9.86908 10.44391 11.32504 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018649 B = 0.002892 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.095916 B = 9681.160938 C =10178.279298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.134 4.134 5 C 0.152 3.848 6 H 0.085 0.915 7 N -0.715 5.715 8 C 0.546 3.454 9 O -0.503 6.503 10 C -0.142 4.142 11 C -0.047 4.047 12 C -0.158 4.158 13 C 0.117 3.883 14 N -0.463 5.463 15 C 0.100 3.900 16 C 0.337 3.663 17 F -0.180 7.180 18 F -0.181 7.181 19 C -0.147 4.147 20 C 0.176 3.824 21 N -0.588 5.588 22 C -0.253 4.253 23 H 0.069 0.931 24 C 0.003 3.997 25 N -0.901 5.901 26 Si 0.900 3.100 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.280 1.280 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.392 0.608 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.169 0.831 39 H 0.121 0.879 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.021 0.979 43 H 0.088 0.912 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.743 -5.877 22.313 23.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.049 3.951 6 H 0.103 0.897 7 N -0.366 5.366 8 C 0.330 3.670 9 O -0.378 6.378 10 C -0.147 4.147 11 C -0.073 4.073 12 C -0.178 4.178 13 C -0.041 4.041 14 N -0.171 5.171 15 C -0.041 4.041 16 C 0.283 3.717 17 F -0.161 7.161 18 F -0.162 7.162 19 C -0.187 4.187 20 C 0.050 3.950 21 N -0.311 5.311 22 C -0.383 4.383 23 H 0.087 0.913 24 C -0.195 4.195 25 N -0.545 5.545 26 Si 0.730 3.270 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.206 1.206 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.226 0.774 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.186 0.814 39 H 0.138 0.862 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.040 0.960 43 H 0.106 0.894 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.176 -5.121 21.881 23.590 hybrid contribution -1.714 -1.089 -0.683 2.143 sum 5.462 -6.210 21.198 22.755 Atomic orbital electron populations 1.21787 0.95744 1.01402 1.00310 1.20350 0.93062 0.93605 0.86596 0.95494 1.22393 0.93555 1.01631 0.99809 1.21114 0.94273 0.96895 0.82792 0.89698 1.46186 1.12564 1.48487 1.29339 1.17939 0.82847 0.82294 0.83939 1.90915 1.55333 1.35709 1.55822 1.21043 0.95478 1.00103 0.98100 1.21871 0.99873 0.92391 0.93206 1.22264 0.97274 1.00795 0.97478 1.22991 0.90602 0.92645 0.97829 1.67345 1.37524 1.07412 1.04866 1.21931 0.92295 0.96609 0.93225 1.19791 0.95185 0.76844 0.79920 1.93072 1.96233 1.88040 1.38730 1.93056 1.87627 1.39095 1.96464 1.22576 0.99926 0.99475 0.96707 1.20732 0.83215 0.97336 0.93764 1.44168 1.02989 1.64885 1.19052 1.19135 0.95176 1.37844 0.86101 0.91322 1.25116 0.97872 0.99536 0.97016 1.70027 1.24033 1.43683 1.16726 0.86347 0.79396 0.79962 0.81330 1.21435 1.21628 1.20553 0.94334 0.91840 0.92784 0.91840 0.92683 0.77425 0.83592 0.83357 0.81382 0.86152 0.92737 0.92691 0.96039 0.89363 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 7.95 37.16 0.30 -2.15 16 2 C 0.17 3.45 3.50 -67.60 -0.24 3.22 16 3 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.13 -2.19 4.84 -26.61 -0.13 -2.31 16 5 C 0.15 2.63 2.42 -67.89 -0.16 2.46 16 6 H 0.08 1.67 7.57 -51.93 -0.39 1.28 16 7 N -0.72 -9.95 5.03 -54.71 -0.28 -10.23 16 8 C 0.55 8.38 7.55 -12.33 -0.09 8.29 16 9 O -0.50 -9.62 11.00 5.32 0.06 -9.56 16 10 C -0.14 -1.74 5.85 -104.82 -0.61 -2.35 16 11 C -0.05 -0.39 9.65 -38.87 -0.37 -0.76 16 12 C -0.16 -0.97 10.10 -39.50 -0.40 -1.37 16 13 C 0.12 0.83 11.17 -17.46 -0.20 0.63 16 14 N -0.46 -4.83 10.24 -9.15 -0.09 -4.93 16 15 C 0.10 1.24 6.31 -82.18 -0.52 0.72 16 16 C 0.34 4.50 5.02 36.01 0.18 4.68 16 17 F -0.18 -2.92 15.04 2.25 0.03 -2.88 16 18 F -0.18 -2.86 15.03 2.25 0.03 -2.83 16 19 C -0.15 -2.92 5.65 -26.61 -0.15 -3.07 16 20 C 0.18 4.26 5.28 -3.71 -0.02 4.24 16 21 N -0.59 -14.31 2.99 -164.78 -0.49 -14.80 16 22 C -0.25 -6.70 8.58 -15.06 -0.13 -6.83 16 23 H 0.07 1.76 6.23 -52.48 -0.33 1.43 16 24 C 0.00 0.10 4.94 -17.43 -0.09 0.01 16 25 N -0.90 -26.19 11.23 55.49 0.62 -25.56 16 26 Si 0.90 21.49 29.58 -169.99 -5.03 16.46 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.25 7.67 -51.93 -0.40 0.86 16 32 H 0.05 0.98 7.40 -51.93 -0.38 0.59 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.39 4.10 6.71 -40.82 -0.27 3.83 16 36 H 0.15 0.83 6.52 -52.49 -0.34 0.49 16 37 H 0.15 0.40 8.06 -52.49 -0.42 -0.03 16 38 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 39 H 0.12 1.17 8.11 -51.93 -0.42 0.75 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 2.39 6.15 -51.93 -0.32 2.07 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 358.02 15.07 5.40 5.40 Total: -1.00 -33.55 358.02 -8.18 -41.73 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.80 Total: 1.78 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -2.63 Total: 5.42 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.24 Total: -55.52 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.06 Total: -9.56 kcal Atomic # 9 Polarization: -5.78 SS G_CDS: 0.07 Total: -5.71 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.55 -8.18 -41.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947527115.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.653 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds