Wall clock time and date at job start Wed Apr 1 2020 00:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.70206 * 2 1 4 4 C 1.53192 * 109.58991 * 120.36027 * 2 1 3 5 5 C 1.53044 * 109.31488 * 174.42591 * 4 2 1 6 6 H 1.09004 * 109.45826 * 58.65368 * 5 4 2 7 7 N 1.46497 * 109.45860 * 178.61223 * 5 4 2 8 8 C 1.34775 * 119.99526 * 205.06367 * 7 5 4 9 9 O 1.21552 * 120.00305 * 0.02562 * 8 7 5 10 10 C 1.47846 * 119.99935 * 180.02562 * 8 7 5 11 11 C 1.40026 * 120.55461 * 0.02562 * 10 8 7 12 12 C 1.38357 * 118.28657 * 179.97438 * 11 10 8 13 13 C 1.38353 * 119.30551 * 0.02562 * 12 11 10 14 14 N 1.31936 * 121.07503 * 359.97297 * 13 12 11 15 15 C 1.31688 * 121.87894 * 359.75089 * 14 13 12 16 16 C 1.50705 * 119.71694 * 180.26773 * 15 14 13 17 17 F 1.39900 * 109.47206 * 120.26632 * 16 15 14 18 18 F 1.39897 * 109.46925 * 240.27348 * 16 15 14 19 19 C 1.53043 * 109.53554 * 298.63475 * 5 4 2 20 20 C 1.53190 * 109.31272 * 61.36418 * 19 5 4 21 21 N 1.46923 * 109.58887 * 239.65066 * 2 1 3 22 22 C 1.36936 * 120.63101 * 6.58068 * 21 2 1 23 23 H 1.08004 * 119.99659 * 330.18020 * 22 21 2 24 24 C 1.38813 * 120.00636 * 150.18150 * 22 21 2 25 25 N 1.31625 * 119.99447 * 344.49475 * 24 22 21 26 26 Si 1.86792 * 120.00223 * 164.48844 * 24 22 21 27 27 H 1.48503 * 109.47209 * 90.00511 * 26 24 22 28 28 H 1.48505 * 109.47294 * 210.00392 * 26 24 22 29 29 H 1.48496 * 109.47511 * 330.00126 * 26 24 22 30 30 H 1.08998 * 109.46970 * 299.63781 * 1 2 3 31 31 H 1.09001 * 109.47635 * 59.64160 * 1 2 3 32 32 H 1.09004 * 109.47024 * 179.64155 * 1 2 3 33 33 H 1.08994 * 109.49915 * 54.47160 * 4 2 1 34 34 H 1.09006 * 109.52106 * 294.38965 * 4 2 1 35 35 H 0.96997 * 120.00251 * 25.06826 * 7 5 4 36 36 H 1.07998 * 120.85820 * 359.97438 * 11 10 8 37 37 H 1.08001 * 120.34725 * 180.02562 * 12 11 10 38 38 H 1.07992 * 119.46391 * 180.02562 * 13 12 11 39 39 H 1.09005 * 109.46588 * 0.27044 * 16 15 14 40 40 H 1.09000 * 109.49776 * 301.41368 * 19 5 4 41 41 H 1.09001 * 109.49800 * 181.31696 * 19 5 4 42 42 H 1.08997 * 109.58984 * 65.15567 * 20 19 5 43 43 H 1.09004 * 109.58613 * 185.57580 * 20 19 5 44 44 H 0.96997 * 119.99477 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7295 1.2453 5 6 3.5676 -0.8480 1.1701 6 1 4.0061 0.1475 1.0993 7 7 4.0653 -1.5158 2.3753 8 6 5.3291 -1.3011 2.7913 9 8 6.0557 -0.5530 2.1669 10 6 5.8316 -1.9754 4.0073 11 6 5.0047 -2.8398 4.7351 12 6 5.5234 -3.4463 5.8654 13 6 6.8295 -3.1815 6.2371 14 7 7.5855 -2.3622 5.5316 15 6 7.1393 -1.7654 4.4459 16 6 8.0472 -0.8433 3.6735 17 9 8.1972 -1.3226 2.3677 18 9 7.4890 0.4390 3.6385 19 6 3.9570 -1.6656 -0.0637 20 6 3.4651 -0.9467 -1.3238 21 7 2.0225 -0.6994 -1.1945 22 6 1.1537 -1.1133 -2.1686 23 1 0.1398 -1.3805 -1.9098 24 6 1.5759 -1.1894 -3.4888 25 7 2.6865 -0.5883 -3.8601 26 14 0.5683 -2.1448 -4.7381 27 1 -0.4259 -1.2396 -5.3687 28 1 1.4684 -2.6960 -5.7828 29 1 -0.1388 -3.2585 -4.0563 30 1 -0.3633 0.5082 0.8932 31 1 -0.3634 0.5194 -0.8867 32 1 -0.3633 -1.0277 -0.0064 33 1 1.6031 -1.7254 1.2912 34 1 1.7660 -0.1674 2.1371 35 1 3.4853 -2.1125 2.8737 36 1 3.9884 -3.0283 4.4224 37 1 4.9150 -4.1194 6.4514 38 1 7.2370 -3.6539 7.1186 39 1 9.0220 -0.8021 4.1596 40 1 3.4984 -2.6527 -0.0055 41 1 5.0413 -1.7694 -0.1039 42 1 3.9903 0.0023 -1.4318 43 1 3.6519 -1.5714 -2.1973 44 1 2.9818 -0.6418 -4.7825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947527115.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:23 Heat of formation + Delta-G solvation = -94.234282 kcal Electronic energy + Delta-G solvation = -30288.271055 eV Core-core repulsion = 25876.187448 eV Total energy + Delta-G solvation = -4412.083606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.85432 -47.86811 -41.80904 -40.50349 -39.14674 -36.21679 -34.49675 -33.93630 -33.30960 -32.70666 -31.17009 -28.22154 -27.75233 -26.71195 -25.61939 -24.00751 -23.37478 -22.60206 -21.56526 -21.00528 -19.28957 -18.59449 -18.46284 -18.15030 -18.10278 -17.42662 -17.06230 -16.45653 -16.25974 -16.11481 -15.81219 -15.65611 -15.41303 -14.94889 -14.92371 -14.64480 -14.52210 -14.32365 -14.24473 -14.09638 -14.09440 -13.33496 -13.23937 -12.95766 -12.71479 -12.70926 -12.60458 -12.36875 -12.33297 -12.10702 -11.85818 -11.72612 -11.51529 -11.36751 -11.13640 -11.10269 -10.67502 -10.55299 -10.42934 -10.03526 -8.64412 -7.83530 -5.30686 -0.60596 -0.05363 1.47476 1.49112 1.58255 1.76376 1.97145 2.35515 2.53153 2.59881 3.21192 3.30581 3.33696 3.49616 3.60818 3.69052 3.84851 3.88592 4.04365 4.05296 4.11402 4.24893 4.26314 4.36257 4.39353 4.61051 4.70119 4.74560 4.79477 4.82602 4.94228 4.95559 5.06092 5.08453 5.15943 5.37722 5.40298 5.46382 5.52921 5.55918 5.70064 5.73362 6.43205 6.45041 6.59517 7.15194 7.17012 7.88811 8.42443 9.24135 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018649 B = 0.002892 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.095916 B = 9681.160938 C =10178.279298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.158 3.842 3 H 0.008 0.992 4 C -0.116 4.116 5 C 0.164 3.836 6 H 0.054 0.946 7 N -0.700 5.700 8 C 0.541 3.459 9 O -0.551 6.551 10 C -0.168 4.168 11 C -0.043 4.043 12 C -0.138 4.138 13 C 0.119 3.881 14 N -0.479 5.479 15 C 0.080 3.920 16 C 0.323 3.677 17 F -0.203 7.203 18 F -0.202 7.202 19 C -0.129 4.129 20 C 0.185 3.815 21 N -0.602 5.602 22 C -0.249 4.249 23 H 0.082 0.918 24 C -0.058 4.058 25 N -0.942 5.942 26 Si 0.965 3.035 27 H -0.286 1.286 28 H -0.300 1.300 29 H -0.264 1.264 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.413 0.587 36 H 0.175 0.825 37 H 0.196 0.804 38 H 0.209 0.791 39 H 0.151 0.849 40 H 0.064 0.936 41 H 0.040 0.960 42 H -0.016 1.016 43 H 0.053 0.947 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.522 -8.571 26.454 28.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.052 3.948 3 H 0.026 0.974 4 C -0.156 4.156 5 C 0.060 3.940 6 H 0.072 0.928 7 N -0.352 5.352 8 C 0.328 3.672 9 O -0.430 6.430 10 C -0.174 4.174 11 C -0.069 4.069 12 C -0.157 4.157 13 C -0.038 4.038 14 N -0.188 5.188 15 C -0.059 4.059 16 C 0.269 3.731 17 F -0.185 7.185 18 F -0.183 7.183 19 C -0.169 4.169 20 C 0.058 3.942 21 N -0.326 5.326 22 C -0.379 4.379 23 H 0.100 0.900 24 C -0.253 4.253 25 N -0.589 5.589 26 Si 0.793 3.207 27 H -0.213 1.213 28 H -0.227 1.227 29 H -0.189 1.189 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.251 0.749 36 H 0.192 0.808 37 H 0.213 0.787 38 H 0.226 0.774 39 H 0.168 0.832 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.002 0.998 43 H 0.072 0.928 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.911 -7.842 26.087 27.679 hybrid contribution -0.985 -0.258 -1.812 2.078 sum 3.926 -8.100 24.275 25.890 Atomic orbital electron populations 1.21701 0.93641 1.01830 1.01140 1.20649 0.94858 0.92782 0.86501 0.97429 1.22187 0.91972 1.02521 0.98895 1.20680 0.95206 0.95086 0.83046 0.92760 1.45806 1.12690 1.48504 1.28161 1.18523 0.82526 0.81599 0.84596 1.90896 1.56572 1.37900 1.57606 1.20826 0.96352 1.02389 0.97843 1.22255 1.00569 0.90897 0.93159 1.22786 0.96993 0.99647 0.96242 1.23826 0.91064 0.90933 0.97993 1.67365 1.38525 1.08403 1.04553 1.21690 0.92336 0.97565 0.94321 1.20322 0.97168 0.76399 0.79198 1.93008 1.96438 1.88285 1.40734 1.92996 1.88120 1.40668 1.96504 1.22293 0.98833 0.99679 0.96116 1.20405 0.83785 0.95279 0.94702 1.44427 1.02504 1.65593 1.20120 1.19555 0.95714 1.36189 0.86466 0.90035 1.25921 0.99137 1.01058 0.99138 1.70216 1.26188 1.45931 1.16528 0.85313 0.77713 0.78884 0.78776 1.21292 1.22651 1.18892 0.90362 0.94270 0.92367 0.90102 0.89094 0.74863 0.80767 0.78657 0.77431 0.83191 0.91699 0.94135 0.99774 0.92839 0.94481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 7.95 71.98 0.57 -3.68 16 2 C 0.16 6.27 3.50 44.97 0.16 6.42 16 3 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 4 C -0.12 -3.50 4.84 30.67 0.15 -3.35 16 5 C 0.16 5.64 2.42 45.02 0.11 5.75 16 6 H 0.05 2.23 7.57 -2.38 -0.02 2.21 16 7 N -0.70 -18.39 5.03 -445.27 -2.24 -20.63 16 8 C 0.54 16.64 7.55 86.79 0.65 17.29 16 9 O -0.55 -22.30 11.00 -3.88 -0.04 -22.34 16 10 C -0.17 -3.89 5.85 -19.99 -0.12 -4.00 16 11 C -0.04 -0.53 9.65 22.73 0.22 -0.31 16 12 C -0.14 -0.90 10.10 22.33 0.23 -0.68 16 13 C 0.12 1.15 11.17 84.70 0.95 2.10 16 14 N -0.48 -8.93 10.24 -182.85 -1.87 -10.80 16 15 C 0.08 1.95 6.31 42.89 0.27 2.22 16 16 C 0.32 9.02 5.02 71.24 0.36 9.38 16 17 F -0.20 -7.07 15.04 44.97 0.68 -6.40 16 18 F -0.20 -6.78 15.03 44.97 0.68 -6.10 16 19 C -0.13 -5.29 5.65 30.67 0.17 -5.12 16 20 C 0.19 9.50 5.28 86.36 0.46 9.96 16 21 N -0.60 -29.94 2.99 -675.23 -2.02 -31.96 16 22 C -0.25 -13.29 8.58 84.03 0.72 -12.57 16 23 H 0.08 4.09 6.23 -2.91 -0.02 4.07 16 24 C -0.06 -3.26 4.94 84.86 0.42 -2.84 16 25 N -0.94 -57.63 11.23 21.65 0.24 -57.38 16 26 Si 0.96 44.99 29.58 68.60 2.03 47.02 16 27 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 28 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 29 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.04 1.49 7.67 -2.39 -0.02 1.48 16 32 H 0.06 1.92 7.40 -2.38 -0.02 1.90 16 33 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.41 7.14 6.71 -92.71 -0.62 6.52 16 36 H 0.18 1.02 6.52 -2.91 -0.02 1.00 16 37 H 0.20 -0.49 8.06 -2.91 -0.02 -0.51 16 38 H 0.21 0.25 8.06 -2.91 -0.02 0.22 16 39 H 0.15 3.03 8.11 -2.38 -0.02 3.01 16 40 H 0.06 2.51 8.14 -2.39 -0.02 2.50 16 41 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 42 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 43 H 0.05 3.09 6.15 -2.39 -0.01 3.08 16 44 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -81.17 358.02 3.19 -77.99 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.42 Total: 10.03 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: 5.31 Total: 20.57 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -5.89 Total: -120.77 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.04 Total: -22.34 kcal Atomic # 9 Polarization: -13.85 SS G_CDS: 1.35 Total: -12.50 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -81.17 3.19 -77.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947527115.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.246 kcal (2) G-P(sol) polarization free energy of solvation -81.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds