Wall clock time and date at job start Wed Apr 1 2020 00:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.58276 * 2 1 4 4 C 1.53188 * 109.59890 * 120.43394 * 2 1 3 5 5 C 1.53034 * 109.31448 * 65.13809 * 4 2 1 6 6 H 1.09006 * 109.45844 * 301.36850 * 5 4 2 7 7 N 1.46503 * 109.46281 * 181.40145 * 5 4 2 8 8 C 1.34775 * 120.00073 * 154.97338 * 7 5 4 9 9 O 1.21551 * 120.00059 * 359.97438 * 8 7 5 10 10 C 1.47840 * 120.00069 * 179.97438 * 8 7 5 11 11 C 1.40026 * 120.55765 * 5.42751 * 10 8 7 12 12 C 1.38354 * 118.29117 * 180.24392 * 11 10 8 13 13 C 1.38357 * 119.30280 * 359.75327 * 12 11 10 14 14 N 1.31926 * 121.07580 * 0.02562 * 13 12 11 15 15 C 1.31696 * 121.88226 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.71629 * 179.97438 * 15 14 13 17 17 F 1.39902 * 109.46962 * 238.02236 * 16 15 14 18 18 F 1.39903 * 109.47307 * 118.02339 * 16 15 14 19 19 C 1.53033 * 109.52986 * 61.38065 * 5 4 2 20 20 C 1.53188 * 109.31520 * 298.63304 * 19 5 4 21 21 N 1.46928 * 108.77703 * 54.63429 * 20 19 5 22 22 C 1.36935 * 120.63258 * 126.41521 * 21 20 19 23 23 H 1.08005 * 119.99543 * 208.08018 * 22 21 20 24 24 C 1.38812 * 120.00127 * 28.07779 * 22 21 20 25 25 N 1.31620 * 119.99582 * 17.07143 * 24 22 21 26 26 Si 1.86797 * 119.99856 * 197.07091 * 24 22 21 27 27 H 1.48499 * 109.47490 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47015 * 120.00314 * 26 24 22 29 29 H 1.48502 * 109.47099 * 239.99766 * 26 24 22 30 30 H 1.09007 * 109.46819 * 180.28315 * 1 2 3 31 31 H 1.08995 * 109.47328 * 300.27766 * 1 2 3 32 32 H 1.08997 * 109.47253 * 60.28163 * 1 2 3 33 33 H 1.09001 * 109.48745 * 305.18777 * 4 2 1 34 34 H 1.09003 * 109.50800 * 185.09650 * 4 2 1 35 35 H 0.97004 * 119.99714 * 334.96692 * 7 5 4 36 36 H 1.08007 * 120.85839 * 0.02562 * 11 10 8 37 37 H 1.07999 * 120.35460 * 179.72908 * 12 11 10 38 38 H 1.07995 * 119.46419 * 179.97438 * 13 12 11 39 39 H 1.08995 * 109.47345 * 358.01842 * 16 15 14 40 40 H 1.09000 * 109.49738 * 58.58256 * 19 5 4 41 41 H 1.09007 * 109.50302 * 178.67949 * 19 5 4 42 42 H 1.09000 * 109.58754 * 174.42186 * 20 19 5 43 43 H 1.08998 * 109.58574 * 294.70483 * 20 19 5 44 44 H 0.97004 * 119.99234 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0438 -0.7310 1.2443 5 6 1.6416 -2.2055 1.1673 6 1 0.5566 -2.2827 1.0963 7 7 2.1024 -2.9008 2.3717 8 6 1.4747 -4.0191 2.7860 9 8 0.5259 -4.4507 2.1607 10 6 1.9401 -4.7210 4.0011 11 6 2.9574 -4.1747 4.7932 12 6 3.3602 -4.8737 5.9172 13 6 2.7474 -6.0760 6.2226 14 7 1.7880 -6.5644 5.4601 15 6 1.3700 -5.9366 4.3804 16 6 0.2709 -6.5395 3.5441 17 9 0.7296 -6.7265 2.2358 18 9 -0.8321 -5.6789 3.5330 19 6 2.2801 -2.8462 -0.0671 20 6 1.7693 -2.1392 -1.3265 21 7 2.0226 -0.6979 -1.1954 22 6 2.7044 -0.0180 -2.1690 23 1 3.2749 0.8629 -1.9138 24 6 2.6624 -0.4609 -3.4839 25 7 1.7275 -1.3058 -3.8641 26 14 3.9326 0.1423 -4.7136 27 1 4.8681 1.0784 -4.0402 28 1 4.6921 -1.0160 -5.2491 29 1 3.2476 0.8434 -5.8292 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3634 0.5181 0.8874 32 1 -0.3633 0.5094 -0.8925 33 1 1.6079 -0.2811 2.1363 34 1 3.1300 -0.6521 1.2902 35 1 2.8595 -2.5562 2.8708 36 1 3.4183 -3.2336 4.5315 37 1 4.1449 -4.4853 6.5493 38 1 3.0600 -6.6239 7.0991 39 1 -0.0222 -7.5003 3.9672 40 1 3.3640 -2.7472 -0.0088 41 1 2.0124 -3.9021 -0.1088 42 1 2.2945 -2.5246 -2.2004 43 1 0.6993 -2.3158 -1.4360 44 1 1.6980 -1.6150 -4.7831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947527116.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:29 Heat of formation + Delta-G solvation = -71.621997 kcal Electronic energy + Delta-G solvation = -30447.837920 eV Core-core repulsion = 26036.734855 eV Total energy + Delta-G solvation = -4411.103064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.75461 -46.73407 -40.96585 -39.38812 -37.68232 -34.67392 -33.41634 -32.58252 -32.30139 -30.72200 -29.52021 -27.24180 -26.74274 -25.04959 -24.22569 -22.84049 -21.96952 -21.76290 -20.54415 -18.81504 -18.10083 -17.72752 -17.42979 -17.05413 -16.58244 -16.38700 -15.64046 -15.40127 -15.11757 -14.89777 -14.50989 -14.03404 -13.81776 -13.73799 -13.55674 -13.45983 -13.33565 -13.05731 -13.03355 -12.61995 -12.48368 -12.31180 -12.21209 -11.42109 -11.39337 -11.07477 -10.92470 -10.80384 -10.61898 -10.47506 -10.35416 -10.28407 -10.17369 -10.00919 -9.76683 -9.72225 -9.70696 -9.34984 -8.74895 -8.41154 -6.68295 -5.77854 -3.20838 0.14324 0.56636 2.69268 3.09668 3.16324 3.37462 3.42426 3.45274 3.47055 3.98740 4.17182 4.23616 4.32998 4.48887 4.53966 4.77033 4.89821 5.05238 5.07691 5.28557 5.37686 5.39066 5.40945 5.49946 5.59353 5.77217 5.93525 6.01346 6.06231 6.25136 6.28905 6.40468 6.46166 6.57877 6.64922 6.81053 6.85777 6.94996 7.16472 7.23192 7.39467 7.57128 7.71778 7.80848 8.25262 8.46222 9.21856 9.85251 10.42056 11.30328 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018666 B = 0.002928 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.689516 B = 9559.295793 C = 9844.887929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.171 3.829 3 H 0.066 0.934 4 C -0.132 4.132 5 C 0.151 3.849 6 H 0.089 0.911 7 N -0.715 5.715 8 C 0.546 3.454 9 O -0.503 6.503 10 C -0.142 4.142 11 C -0.047 4.047 12 C -0.158 4.158 13 C 0.117 3.883 14 N -0.463 5.463 15 C 0.100 3.900 16 C 0.337 3.663 17 F -0.181 7.181 18 F -0.180 7.180 19 C -0.147 4.147 20 C 0.174 3.826 21 N -0.585 5.585 22 C -0.254 4.254 23 H 0.066 0.934 24 C 0.004 3.996 25 N -0.899 5.899 26 Si 0.901 3.099 27 H -0.278 1.278 28 H -0.289 1.289 29 H -0.291 1.291 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.391 0.609 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.169 0.831 39 H 0.121 0.879 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.022 0.978 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.071 -7.753 22.342 23.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.084 0.916 4 C -0.172 4.172 5 C 0.048 3.952 6 H 0.107 0.893 7 N -0.366 5.366 8 C 0.330 3.670 9 O -0.378 6.378 10 C -0.147 4.147 11 C -0.074 4.074 12 C -0.178 4.178 13 C -0.041 4.041 14 N -0.171 5.171 15 C -0.041 4.041 16 C 0.282 3.718 17 F -0.162 7.162 18 F -0.162 7.162 19 C -0.187 4.187 20 C 0.048 3.952 21 N -0.307 5.307 22 C -0.383 4.383 23 H 0.084 0.916 24 C -0.195 4.195 25 N -0.542 5.542 26 Si 0.731 3.269 27 H -0.203 1.203 28 H -0.216 1.216 29 H -0.218 1.218 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.226 0.774 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.186 0.814 39 H 0.139 0.861 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.107 0.893 43 H 0.040 0.960 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.945 -8.888 21.859 23.677 hybrid contribution 1.511 1.302 -0.627 2.091 sum 3.457 -7.586 21.232 22.810 Atomic orbital electron populations 1.22310 0.98651 1.01189 1.00093 1.20429 0.91820 0.95060 0.86469 0.91627 1.22308 1.01116 0.94077 0.99730 1.21174 1.00076 0.91181 0.82760 0.89317 1.46200 1.34335 1.26652 1.29411 1.17934 0.83732 0.81403 0.83938 1.90913 1.26614 1.64562 1.55725 1.21043 0.98763 0.96917 0.97983 1.21871 0.93229 0.99336 0.92925 1.22263 1.01344 0.96346 0.97858 1.22989 0.90461 0.93147 0.97477 1.67342 1.12592 1.33410 1.03800 1.21929 0.96755 0.91792 0.93589 1.19794 0.80290 0.92415 0.79265 1.93073 1.89181 1.95567 1.38340 1.93060 1.53514 1.73171 1.96408 1.22574 1.00052 0.99370 0.96722 1.20731 0.97832 0.82810 0.93814 1.44183 1.63778 1.03490 1.19216 1.19189 1.21901 1.10559 0.86669 0.91649 1.25061 0.97666 0.99969 0.96830 1.70049 1.31617 1.35820 1.16764 0.86255 0.81290 0.78044 0.81340 1.20303 1.21614 1.21763 0.93139 0.94518 0.92568 0.92591 0.91904 0.77450 0.83582 0.83361 0.81388 0.86150 0.92752 0.92704 0.89326 0.95959 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 9.03 37.16 0.34 -2.79 16 2 C 0.17 3.40 3.29 -67.60 -0.22 3.18 16 3 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 4 C -0.13 -2.14 5.02 -26.62 -0.13 -2.28 16 5 C 0.15 2.59 2.21 -67.89 -0.15 2.44 16 6 H 0.09 1.73 5.92 -51.93 -0.31 1.42 16 7 N -0.72 -9.93 5.03 -54.71 -0.28 -10.20 16 8 C 0.55 8.37 7.51 -12.33 -0.09 8.28 16 9 O -0.50 -9.60 11.05 5.32 0.06 -9.54 16 10 C -0.14 -1.73 5.85 -104.82 -0.61 -2.34 16 11 C -0.05 -0.39 9.64 -38.87 -0.37 -0.76 16 12 C -0.16 -0.96 10.10 -39.49 -0.40 -1.36 16 13 C 0.12 0.83 11.17 -17.47 -0.20 0.63 16 14 N -0.46 -4.83 10.24 -9.15 -0.09 -4.93 16 15 C 0.10 1.24 6.31 -82.17 -0.52 0.72 16 16 C 0.34 4.51 5.02 36.00 0.18 4.69 16 17 F -0.18 -2.93 14.98 2.25 0.03 -2.90 16 18 F -0.18 -2.85 15.09 2.25 0.03 -2.82 16 19 C -0.15 -2.93 5.65 -26.62 -0.15 -3.08 16 20 C 0.17 4.20 4.89 -3.71 -0.02 4.18 16 21 N -0.59 -14.18 2.70 -164.78 -0.45 -14.63 16 22 C -0.25 -6.79 9.58 -15.06 -0.14 -6.94 16 23 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 24 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 25 N -0.90 -26.04 11.20 55.49 0.62 -25.42 16 26 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 H 0.05 1.01 5.73 -51.93 -0.30 0.72 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.39 4.08 6.74 -40.82 -0.28 3.81 16 36 H 0.15 0.82 6.56 -52.48 -0.34 0.47 16 37 H 0.15 0.39 8.06 -52.49 -0.42 -0.03 16 38 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 39 H 0.12 1.18 8.11 -51.93 -0.42 0.75 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 1.13 8.14 -51.92 -0.42 0.70 16 42 H 0.09 2.41 6.06 -51.93 -0.31 2.09 16 43 H 0.02 0.58 7.51 -51.93 -0.39 0.19 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 357.09 15.07 5.38 5.38 Total: -1.00 -33.50 357.09 -7.99 -41.49 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.69 Total: 2.49 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -2.58 Total: 4.57 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.19 Total: -55.18 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.06 Total: -9.54 kcal Atomic # 9 Polarization: -5.78 SS G_CDS: 0.07 Total: -5.72 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.50 -7.99 -41.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947527116.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.129 kcal (2) G-P(sol) polarization free energy of solvation -33.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds