Wall clock time and date at job start Wed Apr 1 2020 00:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.58276 * 2 1 4 4 C 1.53188 * 109.59890 * 120.43394 * 2 1 3 5 5 C 1.53034 * 109.31448 * 65.13809 * 4 2 1 6 6 H 1.09006 * 109.45844 * 301.36850 * 5 4 2 7 7 N 1.46503 * 109.46281 * 181.40145 * 5 4 2 8 8 C 1.34775 * 120.00073 * 154.97338 * 7 5 4 9 9 O 1.21551 * 120.00059 * 359.97438 * 8 7 5 10 10 C 1.47840 * 120.00069 * 179.97438 * 8 7 5 11 11 C 1.40026 * 120.55765 * 5.42751 * 10 8 7 12 12 C 1.38354 * 118.29117 * 180.24392 * 11 10 8 13 13 C 1.38357 * 119.30280 * 359.75327 * 12 11 10 14 14 N 1.31926 * 121.07580 * 0.02562 * 13 12 11 15 15 C 1.31696 * 121.88226 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.71629 * 179.97438 * 15 14 13 17 17 F 1.39902 * 109.46962 * 238.02236 * 16 15 14 18 18 F 1.39903 * 109.47307 * 118.02339 * 16 15 14 19 19 C 1.53033 * 109.52986 * 61.38065 * 5 4 2 20 20 C 1.53188 * 109.31520 * 298.63304 * 19 5 4 21 21 N 1.46928 * 108.77703 * 54.63429 * 20 19 5 22 22 C 1.36935 * 120.63258 * 126.41521 * 21 20 19 23 23 H 1.08005 * 119.99543 * 208.08018 * 22 21 20 24 24 C 1.38812 * 120.00127 * 28.07779 * 22 21 20 25 25 N 1.31620 * 119.99582 * 17.07143 * 24 22 21 26 26 Si 1.86797 * 119.99856 * 197.07091 * 24 22 21 27 27 H 1.48499 * 109.47490 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47015 * 120.00314 * 26 24 22 29 29 H 1.48502 * 109.47099 * 239.99766 * 26 24 22 30 30 H 1.09007 * 109.46819 * 180.28315 * 1 2 3 31 31 H 1.08995 * 109.47328 * 300.27766 * 1 2 3 32 32 H 1.08997 * 109.47253 * 60.28163 * 1 2 3 33 33 H 1.09001 * 109.48745 * 305.18777 * 4 2 1 34 34 H 1.09003 * 109.50800 * 185.09650 * 4 2 1 35 35 H 0.97004 * 119.99714 * 334.96692 * 7 5 4 36 36 H 1.08007 * 120.85839 * 0.02562 * 11 10 8 37 37 H 1.07999 * 120.35460 * 179.72908 * 12 11 10 38 38 H 1.07995 * 119.46419 * 179.97438 * 13 12 11 39 39 H 1.08995 * 109.47345 * 358.01842 * 16 15 14 40 40 H 1.09000 * 109.49738 * 58.58256 * 19 5 4 41 41 H 1.09007 * 109.50302 * 178.67949 * 19 5 4 42 42 H 1.09000 * 109.58754 * 174.42186 * 20 19 5 43 43 H 1.08998 * 109.58574 * 294.70483 * 20 19 5 44 44 H 0.97004 * 119.99234 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0438 -0.7310 1.2443 5 6 1.6416 -2.2055 1.1673 6 1 0.5566 -2.2827 1.0963 7 7 2.1024 -2.9008 2.3717 8 6 1.4747 -4.0191 2.7860 9 8 0.5259 -4.4507 2.1607 10 6 1.9401 -4.7210 4.0011 11 6 2.9574 -4.1747 4.7932 12 6 3.3602 -4.8737 5.9172 13 6 2.7474 -6.0760 6.2226 14 7 1.7880 -6.5644 5.4601 15 6 1.3700 -5.9366 4.3804 16 6 0.2709 -6.5395 3.5441 17 9 0.7296 -6.7265 2.2358 18 9 -0.8321 -5.6789 3.5330 19 6 2.2801 -2.8462 -0.0671 20 6 1.7693 -2.1392 -1.3265 21 7 2.0226 -0.6979 -1.1954 22 6 2.7044 -0.0180 -2.1690 23 1 3.2749 0.8629 -1.9138 24 6 2.6624 -0.4609 -3.4839 25 7 1.7275 -1.3058 -3.8641 26 14 3.9326 0.1423 -4.7136 27 1 4.8681 1.0784 -4.0402 28 1 4.6921 -1.0160 -5.2491 29 1 3.2476 0.8434 -5.8292 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3634 0.5181 0.8874 32 1 -0.3633 0.5094 -0.8925 33 1 1.6079 -0.2811 2.1363 34 1 3.1300 -0.6521 1.2902 35 1 2.8595 -2.5562 2.8708 36 1 3.4183 -3.2336 4.5315 37 1 4.1449 -4.4853 6.5493 38 1 3.0600 -6.6239 7.0991 39 1 -0.0222 -7.5003 3.9672 40 1 3.3640 -2.7472 -0.0088 41 1 2.0124 -3.9021 -0.1088 42 1 2.2945 -2.5246 -2.2004 43 1 0.6993 -2.3158 -1.4360 44 1 1.6980 -1.6150 -4.7831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947527116.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:28 Heat of formation + Delta-G solvation = -94.240418 kcal Electronic energy + Delta-G solvation = -30448.818728 eV Core-core repulsion = 26036.734855 eV Total energy + Delta-G solvation = -4412.083872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.85262 -47.86561 -41.80843 -40.54958 -39.18898 -36.13316 -34.58696 -33.84640 -33.24601 -32.38007 -31.21138 -28.67149 -27.83330 -26.28944 -25.60918 -23.99249 -23.56484 -23.01002 -21.76770 -20.23822 -19.31741 -18.75927 -18.55420 -18.14831 -18.07947 -17.51562 -16.91002 -16.46042 -16.24802 -16.10511 -15.84264 -15.52544 -15.42277 -14.89363 -14.76130 -14.63810 -14.32288 -14.25017 -14.16178 -14.13251 -14.06861 -13.86287 -13.23782 -13.16260 -12.92474 -12.67151 -12.57251 -12.36286 -12.27053 -12.04713 -11.97973 -11.77356 -11.50223 -11.23188 -11.12958 -11.05915 -10.66687 -10.56729 -10.42249 -10.01231 -8.68848 -7.85354 -5.30938 -0.59849 -0.04881 1.46682 1.48708 1.59028 1.76841 1.99543 2.35815 2.52108 2.60340 3.21499 3.29753 3.32637 3.50800 3.62997 3.69604 3.84185 3.88284 4.04813 4.07660 4.11547 4.26483 4.28397 4.38001 4.43792 4.51309 4.70225 4.73669 4.81298 4.83935 4.88272 4.95278 5.07608 5.12197 5.16222 5.32942 5.41003 5.43571 5.47990 5.55824 5.68879 5.75177 6.41130 6.46224 6.60049 7.15704 7.16540 7.87713 8.40360 9.21445 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018666 B = 0.002928 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.689516 B = 9559.295793 C = 9844.887929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.160 3.840 3 H 0.073 0.927 4 C -0.117 4.117 5 C 0.164 3.836 6 H 0.062 0.938 7 N -0.700 5.700 8 C 0.542 3.458 9 O -0.551 6.551 10 C -0.168 4.168 11 C -0.043 4.043 12 C -0.138 4.138 13 C 0.118 3.882 14 N -0.480 5.480 15 C 0.080 3.920 16 C 0.323 3.677 17 F -0.204 7.204 18 F -0.201 7.201 19 C -0.131 4.131 20 C 0.187 3.813 21 N -0.599 5.599 22 C -0.256 4.256 23 H 0.075 0.925 24 C -0.054 4.054 25 N -0.937 5.937 26 Si 0.966 3.034 27 H -0.261 1.261 28 H -0.295 1.295 29 H -0.296 1.296 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.027 0.973 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.413 0.587 36 H 0.175 0.825 37 H 0.196 0.804 38 H 0.209 0.791 39 H 0.151 0.849 40 H 0.062 0.938 41 H 0.039 0.961 42 H 0.051 0.949 43 H -0.012 1.012 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.977 -6.606 26.511 27.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.091 0.909 4 C -0.156 4.156 5 C 0.059 3.941 6 H 0.081 0.919 7 N -0.352 5.352 8 C 0.328 3.672 9 O -0.430 6.430 10 C -0.174 4.174 11 C -0.069 4.069 12 C -0.157 4.157 13 C -0.039 4.039 14 N -0.189 5.189 15 C -0.059 4.059 16 C 0.269 3.731 17 F -0.185 7.185 18 F -0.182 7.182 19 C -0.171 4.171 20 C 0.060 3.940 21 N -0.322 5.322 22 C -0.386 4.386 23 H 0.092 0.908 24 C -0.249 4.249 25 N -0.583 5.583 26 Si 0.794 3.206 27 H -0.185 1.185 28 H -0.222 1.222 29 H -0.223 1.223 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.047 0.953 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.251 0.749 36 H 0.193 0.807 37 H 0.213 0.787 38 H 0.225 0.775 39 H 0.168 0.832 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.006 0.994 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.886 -7.711 26.092 27.643 hybrid contribution 0.617 0.913 -1.771 2.086 sum 5.503 -6.798 24.320 25.845 Atomic orbital electron populations 1.22201 0.98417 1.00170 1.00559 1.20717 0.92033 0.95624 0.86265 0.90859 1.22135 1.02123 0.92379 0.98960 1.20742 0.98326 0.92169 0.82827 0.91946 1.45835 1.34888 1.26250 1.28274 1.18506 0.82951 0.81179 0.84581 1.90894 1.28804 1.65751 1.57502 1.20833 1.01307 0.97437 0.97813 1.22259 0.91614 1.00319 0.92701 1.22786 1.01019 0.95045 0.96829 1.23820 0.88771 0.93734 0.97534 1.67360 1.14062 1.33845 1.03601 1.21687 0.97176 0.92479 0.94603 1.20319 0.80612 0.93609 0.78561 1.93008 1.89476 1.95715 1.40346 1.93000 1.54721 1.74016 1.96447 1.22312 1.00340 0.98096 0.96390 1.20369 0.95312 0.83789 0.94534 1.44393 1.64119 1.03507 1.20134 1.19585 1.21469 1.10330 0.87224 0.90784 1.25843 0.99515 1.00771 0.98810 1.70226 1.33683 1.37782 1.16654 0.85226 0.79053 0.77412 0.78870 1.18464 1.22170 1.22325 0.94959 0.90647 0.95330 0.88828 0.90357 0.74930 0.80726 0.78672 0.77464 0.83231 0.91949 0.94265 0.93040 0.99390 0.94387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.91 9.03 71.98 0.65 -5.26 16 2 C 0.16 6.21 3.29 44.97 0.15 6.36 16 3 H 0.07 2.74 7.93 -2.39 -0.02 2.72 16 4 C -0.12 -3.44 5.02 30.67 0.15 -3.29 16 5 C 0.16 5.52 2.21 45.01 0.10 5.62 16 6 H 0.06 2.49 5.92 -2.38 -0.01 2.48 16 7 N -0.70 -18.24 5.03 -445.30 -2.24 -20.48 16 8 C 0.54 16.51 7.51 86.79 0.65 17.17 16 9 O -0.55 -22.09 11.05 -3.88 -0.04 -22.14 16 10 C -0.17 -3.86 5.85 -19.99 -0.12 -3.98 16 11 C -0.04 -0.53 9.64 22.73 0.22 -0.31 16 12 C -0.14 -0.90 10.10 22.33 0.23 -0.67 16 13 C 0.12 1.15 11.17 84.71 0.95 2.10 16 14 N -0.48 -8.94 10.24 -182.85 -1.87 -10.81 16 15 C 0.08 1.93 6.31 42.89 0.27 2.21 16 16 C 0.32 9.01 5.02 71.24 0.36 9.37 16 17 F -0.20 -7.10 14.98 44.97 0.67 -6.42 16 18 F -0.20 -6.73 15.09 44.97 0.68 -6.05 16 19 C -0.13 -5.37 5.65 30.67 0.17 -5.20 16 20 C 0.19 9.49 4.89 86.36 0.42 9.92 16 21 N -0.60 -29.52 2.70 -675.23 -1.82 -31.34 16 22 C -0.26 -13.81 9.58 84.03 0.81 -13.00 16 23 H 0.07 3.81 7.89 -2.91 -0.02 3.79 16 24 C -0.05 -3.05 4.91 84.86 0.42 -2.63 16 25 N -0.94 -57.01 11.20 21.65 0.24 -56.77 16 26 Si 0.97 45.08 29.59 68.60 2.03 47.11 16 27 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 28 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 29 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 30 H 0.03 1.33 5.73 -2.38 -0.01 1.32 16 31 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.41 7.08 6.74 -92.71 -0.62 6.45 16 36 H 0.18 0.99 6.56 -2.91 -0.02 0.97 16 37 H 0.20 -0.49 8.06 -2.91 -0.02 -0.52 16 38 H 0.21 0.26 8.06 -2.91 -0.02 0.23 16 39 H 0.15 3.03 8.11 -2.39 -0.02 3.01 16 40 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.05 2.98 6.06 -2.39 -0.01 2.96 16 43 H -0.01 -0.68 7.51 -2.39 -0.02 -0.69 16 44 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -80.64 357.09 3.49 -77.15 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.42 Total: 11.38 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 5.42 Total: 18.38 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -5.69 Total: -119.40 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.04 Total: -22.14 kcal Atomic # 9 Polarization: -13.82 SS G_CDS: 1.35 Total: -12.47 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -80.64 3.49 -77.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947527116.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.094 kcal (2) G-P(sol) polarization free energy of solvation -80.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds