Wall clock time and date at job start Wed Apr 1 2020 00:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.44566 * 2 1 4 4 C 1.53039 * 109.46400 * 119.96425 * 2 1 3 5 5 C 1.53190 * 109.31439 * 181.38589 * 4 2 1 6 6 N 1.46932 * 108.77386 * 305.36883 * 5 4 2 7 7 C 1.36938 * 120.62720 * 233.62764 * 6 5 4 8 8 H 1.07994 * 120.00170 * 27.66612 * 7 6 5 9 9 C 1.38808 * 119.99782 * 207.66518 * 7 6 5 10 10 N 1.31623 * 120.00152 * 17.36195 * 9 7 6 11 11 Si 1.86808 * 119.99942 * 197.36082 * 9 7 6 12 12 H 1.48499 * 109.46758 * 60.00473 * 11 9 7 13 13 H 1.48497 * 109.46862 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47213 * 300.00336 * 11 9 7 15 15 C 1.46928 * 118.74071 * 53.60776 * 6 5 4 16 16 C 1.53038 * 109.45693 * 240.03837 * 2 1 3 17 17 H 1.09007 * 109.52028 * 298.57289 * 16 2 1 18 18 N 1.46498 * 109.50145 * 58.65768 * 16 2 1 19 19 C 1.34776 * 119.99886 * 204.83582 * 18 16 2 20 20 O 1.21552 * 120.00329 * 0.02562 * 19 18 16 21 21 C 1.47838 * 119.99847 * 179.97438 * 19 18 16 22 22 C 1.40024 * 120.56131 * 180.22812 * 21 19 18 23 23 C 1.38356 * 118.29134 * 180.28920 * 22 21 19 24 24 C 1.38358 * 119.30231 * 359.72929 * 23 22 21 25 25 C 1.50696 * 119.46334 * 180.02562 * 24 23 22 26 26 F 1.39894 * 109.47472 * 210.02263 * 25 24 23 27 27 F 1.39903 * 109.46745 * 330.02323 * 25 24 23 28 28 N 1.31931 * 121.07634 * 0.02562 * 24 23 22 29 29 C 1.31693 * 121.88281 * 359.97438 * 28 24 23 30 30 H 1.08999 * 109.46935 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46801 * 299.96030 * 1 2 3 32 32 H 1.08999 * 109.47700 * 59.96542 * 1 2 3 33 33 H 1.09002 * 109.49506 * 61.43733 * 4 2 1 34 34 H 1.08994 * 109.52226 * 301.35268 * 4 2 1 35 35 H 1.08994 * 109.59203 * 185.57810 * 5 4 2 36 36 H 1.09002 * 109.70389 * 65.22152 * 5 4 2 37 37 H 0.97008 * 119.99761 * 179.97438 * 10 9 7 38 38 H 1.08996 * 109.58590 * 186.60200 * 15 6 5 39 39 H 1.08999 * 109.58671 * 66.18082 * 15 6 5 40 40 H 0.97000 * 119.99748 * 24.84039 * 18 16 2 41 41 H 1.08006 * 120.85567 * 0.04057 * 22 21 19 42 42 H 1.07994 * 120.35069 * 179.75234 * 23 22 21 43 43 H 1.08999 * 109.47310 * 90.01960 * 25 24 23 44 44 H 1.07997 * 119.71728 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0400 -0.7207 1.2501 5 6 3.5715 -0.6885 1.2642 6 7 4.0679 -1.2487 -0.0002 7 6 4.9758 -2.2738 -0.0002 8 1 5.0087 -2.9660 0.8281 9 6 5.8539 -2.4231 -1.0648 10 7 6.0602 -1.4214 -1.8933 11 14 6.7430 -4.0459 -1.3217 12 1 5.7474 -5.1291 -1.5232 13 1 7.6161 -3.9478 -2.5189 14 1 7.5716 -4.3508 -0.1277 15 6 3.5713 -0.6884 -1.2644 16 6 2.0398 -0.7207 -1.2501 17 1 1.6978 -1.7556 -1.2389 18 7 1.5254 -0.0486 -2.4460 19 6 1.4000 -0.7313 -3.6012 20 8 1.7133 -1.9048 -3.6509 21 6 0.8804 -0.0533 -4.8078 22 6 0.7409 -0.7525 -6.0130 23 6 0.2557 -0.0703 -7.1145 24 6 -0.0783 1.2666 -6.9899 25 6 -0.6077 2.0130 -8.1872 26 9 -0.2458 3.3611 -8.0938 27 9 -0.0666 1.4648 -9.3551 28 7 0.0591 1.8986 -5.8400 29 6 0.5165 1.2929 -4.7638 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8904 32 1 -0.3634 0.5143 -0.8896 33 1 1.6980 -1.7556 1.2383 34 1 1.6574 -0.2211 2.1400 35 1 3.9419 -1.2843 2.0983 36 1 3.9165 0.3402 1.3684 37 1 6.6741 -1.5257 -2.6371 38 1 3.9416 -1.2843 -2.0986 39 1 3.9142 0.3411 -1.3675 40 1 1.2751 0.8877 -2.4062 41 1 1.0089 -1.7965 -6.0819 42 1 0.1385 -0.5760 -8.0615 43 1 -1.6941 1.9296 -8.2162 44 1 0.6152 1.8442 -3.8404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966570327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:50 Heat of formation + Delta-G solvation = -80.112811 kcal Electronic energy + Delta-G solvation = -29564.218611 eV Core-core repulsion = 25152.747357 eV Total energy + Delta-G solvation = -4411.471253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.33605 -47.33864 -40.85071 -39.33096 -37.61041 -34.50045 -33.38968 -32.96819 -32.38552 -31.00161 -29.14937 -27.60844 -27.00936 -24.19793 -24.11192 -23.42736 -22.09284 -21.09926 -20.38048 -19.53782 -18.34583 -17.89905 -17.80538 -17.38143 -16.86258 -16.45300 -15.35537 -15.31521 -15.07508 -14.68043 -14.51223 -14.14608 -13.95276 -13.78145 -13.72468 -13.62131 -13.47848 -13.37730 -13.27086 -13.02474 -12.87742 -12.45417 -12.05931 -11.74051 -11.65179 -11.63257 -10.92648 -10.74380 -10.70328 -10.49842 -10.31919 -10.25768 -10.20208 -9.98815 -9.90939 -9.61282 -9.54817 -9.49697 -8.65802 -8.44797 -6.68982 -5.78035 -3.21080 0.19019 0.84265 2.73225 2.99879 3.25712 3.41881 3.47684 3.49630 3.59954 3.69089 3.90989 4.36177 4.46494 4.50463 4.52268 4.71575 4.78398 4.90089 5.09641 5.18611 5.20100 5.34779 5.46535 5.55016 5.60131 5.75729 5.85813 5.94089 5.97805 6.05806 6.08504 6.18693 6.32766 6.41464 6.45279 6.66628 6.70577 6.82365 6.93209 7.22863 7.33062 7.67540 7.71700 7.81854 8.39046 8.46129 9.20352 9.84415 10.38879 11.30019 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013176 B = 0.003000 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.587279 B = 9332.309229 C =10749.113578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.068 0.932 4 C -0.125 4.125 5 C 0.141 3.859 6 N -0.587 5.587 7 C -0.258 4.258 8 H 0.066 0.934 9 C 0.007 3.993 10 N -0.899 5.899 11 Si 0.902 3.098 12 H -0.282 1.282 13 H -0.290 1.290 14 H -0.283 1.283 15 C 0.166 3.834 16 C 0.124 3.876 17 H 0.085 0.915 18 N -0.708 5.708 19 C 0.555 3.445 20 O -0.520 6.520 21 C -0.156 4.156 22 C -0.017 4.017 23 C -0.145 4.145 24 C 0.059 3.941 25 C 0.328 3.672 26 F -0.185 7.185 27 F -0.194 7.194 28 N -0.458 5.458 29 C 0.135 3.865 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.019 0.981 37 H 0.254 0.746 38 H 0.095 0.905 39 H 0.018 0.982 40 H 0.392 0.608 41 H 0.157 0.843 42 H 0.151 0.849 43 H 0.131 0.869 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.031 7.170 -7.718 20.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.086 0.914 4 C -0.165 4.165 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.387 4.387 8 H 0.084 0.916 9 C -0.192 4.192 10 N -0.543 5.543 11 Si 0.732 3.268 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.209 1.209 15 C 0.039 3.961 16 C 0.019 3.981 17 H 0.103 0.897 18 N -0.359 5.359 19 C 0.339 3.661 20 O -0.396 6.396 21 C -0.161 4.161 22 C -0.044 4.044 23 C -0.165 4.165 24 C -0.079 4.079 25 C 0.274 3.726 26 F -0.166 7.166 27 F -0.175 7.175 28 N -0.166 5.166 29 C -0.024 4.024 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.064 0.936 38 H 0.114 0.886 39 H 0.036 0.964 40 H 0.226 0.774 41 H 0.175 0.825 42 H 0.169 0.831 43 H 0.148 0.852 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -16.855 7.213 -7.843 19.940 hybrid contribution 0.740 -1.070 -0.316 1.339 sum -16.114 6.143 -8.159 19.078 Atomic orbital electron populations 1.21860 0.95951 1.01619 1.00781 1.21314 0.94595 0.99756 0.95514 0.91363 1.22065 0.98943 1.00063 0.95398 1.20970 0.90793 0.96548 0.90179 1.43946 1.48092 1.39840 0.99125 1.19103 1.09895 1.03269 1.06457 0.91603 1.25027 0.97116 0.97403 0.99640 1.70006 1.37438 1.29104 1.17743 0.86373 0.79181 0.83969 0.77282 1.20870 1.21620 1.20878 1.21108 0.86256 0.97588 0.91186 1.22100 0.98547 0.96424 0.81071 0.89700 1.46001 1.65367 1.14010 1.10510 1.17867 0.78857 0.86641 0.82704 1.90845 1.48958 1.15615 1.84166 1.21372 1.02545 0.95900 0.96275 1.21810 0.91077 1.01328 0.90143 1.21852 0.99676 0.94410 1.00583 1.21813 0.99226 0.92585 0.94292 1.20076 0.97902 0.75232 0.79414 1.93044 1.93757 1.33721 1.96119 1.93028 1.88804 1.85572 1.50081 1.67269 1.12589 1.38299 0.98444 1.22979 0.92135 0.90848 0.96442 0.92881 0.92997 0.93308 0.92060 0.92515 0.92568 0.96354 0.93580 0.88643 0.96404 0.77405 0.82538 0.83138 0.85178 0.81577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.02 37.16 0.34 -1.41 16 2 C -0.09 -1.39 2.27 -90.58 -0.21 -1.60 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.12 -2.01 5.36 -26.61 -0.14 -2.16 16 5 C 0.14 2.84 6.52 -3.71 -0.02 2.82 16 6 N -0.59 -14.56 2.99 -172.32 -0.52 -15.08 16 7 C -0.26 -7.13 9.58 -15.06 -0.14 -7.27 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.36 16 9 C 0.01 0.21 4.91 -17.43 -0.09 0.12 16 10 N -0.90 -26.55 11.19 55.49 0.62 -25.93 16 11 Si 0.90 22.31 29.59 -169.99 -5.03 17.28 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 C 0.17 3.91 4.89 -3.71 -0.02 3.89 16 16 C 0.12 2.27 2.06 -67.81 -0.14 2.13 16 17 H 0.08 1.79 7.58 -51.93 -0.39 1.40 16 18 N -0.71 -10.70 4.33 -54.63 -0.24 -10.94 16 19 C 0.55 9.14 7.75 -12.33 -0.10 9.04 16 20 O -0.52 -10.87 16.09 5.32 0.09 -10.79 16 21 C -0.16 -2.03 5.89 -104.82 -0.62 -2.65 16 22 C -0.02 -0.20 9.72 -38.87 -0.38 -0.58 16 23 C -0.15 -1.40 9.42 -39.49 -0.37 -1.77 16 24 C 0.06 0.61 6.58 -82.51 -0.54 0.07 16 25 C 0.33 2.71 5.72 36.00 0.21 2.92 16 26 F -0.19 -2.01 17.05 2.25 0.04 -1.97 16 27 F -0.19 -1.74 16.45 2.25 0.04 -1.70 16 28 N -0.46 -5.36 9.94 -9.14 -0.09 -5.45 16 29 C 0.14 1.52 10.71 -17.13 -0.18 1.34 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.52 7.35 -51.93 -0.38 0.14 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.10 2.68 6.03 -51.93 -0.31 2.36 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.39 4.55 6.37 -40.82 -0.26 4.29 16 41 H 0.16 1.79 7.74 -52.48 -0.41 1.38 16 42 H 0.15 1.05 7.59 -52.49 -0.40 0.66 16 43 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.17 1.44 6.42 -52.49 -0.34 1.11 16 LS Contribution 367.68 15.07 5.54 5.54 Total: -1.00 -33.76 367.68 -7.79 -41.55 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -5.83 Total: 2.60 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -2.41 Total: 4.90 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.22 Total: -57.40 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.08 Total: -3.68 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.76 -7.79 -41.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966570327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.559 kcal (2) G-P(sol) polarization free energy of solvation -33.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds