Wall clock time and date at job start Wed Apr 1 2020 00:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.44566 * 2 1 4 4 C 1.53039 * 109.46400 * 119.96425 * 2 1 3 5 5 C 1.53190 * 109.31439 * 181.38589 * 4 2 1 6 6 N 1.46932 * 108.77386 * 305.36883 * 5 4 2 7 7 C 1.36938 * 120.62720 * 233.62764 * 6 5 4 8 8 H 1.07994 * 120.00170 * 27.66612 * 7 6 5 9 9 C 1.38808 * 119.99782 * 207.66518 * 7 6 5 10 10 N 1.31623 * 120.00152 * 17.36195 * 9 7 6 11 11 Si 1.86808 * 119.99942 * 197.36082 * 9 7 6 12 12 H 1.48499 * 109.46758 * 60.00473 * 11 9 7 13 13 H 1.48497 * 109.46862 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47213 * 300.00336 * 11 9 7 15 15 C 1.46928 * 118.74071 * 53.60776 * 6 5 4 16 16 C 1.53038 * 109.45693 * 240.03837 * 2 1 3 17 17 H 1.09007 * 109.52028 * 298.57289 * 16 2 1 18 18 N 1.46498 * 109.50145 * 58.65768 * 16 2 1 19 19 C 1.34776 * 119.99886 * 204.83582 * 18 16 2 20 20 O 1.21552 * 120.00329 * 0.02562 * 19 18 16 21 21 C 1.47838 * 119.99847 * 179.97438 * 19 18 16 22 22 C 1.40024 * 120.56131 * 180.22812 * 21 19 18 23 23 C 1.38356 * 118.29134 * 180.28920 * 22 21 19 24 24 C 1.38358 * 119.30231 * 359.72929 * 23 22 21 25 25 C 1.50696 * 119.46334 * 180.02562 * 24 23 22 26 26 F 1.39894 * 109.47472 * 210.02263 * 25 24 23 27 27 F 1.39903 * 109.46745 * 330.02323 * 25 24 23 28 28 N 1.31931 * 121.07634 * 0.02562 * 24 23 22 29 29 C 1.31693 * 121.88281 * 359.97438 * 28 24 23 30 30 H 1.08999 * 109.46935 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46801 * 299.96030 * 1 2 3 32 32 H 1.08999 * 109.47700 * 59.96542 * 1 2 3 33 33 H 1.09002 * 109.49506 * 61.43733 * 4 2 1 34 34 H 1.08994 * 109.52226 * 301.35268 * 4 2 1 35 35 H 1.08994 * 109.59203 * 185.57810 * 5 4 2 36 36 H 1.09002 * 109.70389 * 65.22152 * 5 4 2 37 37 H 0.97008 * 119.99761 * 179.97438 * 10 9 7 38 38 H 1.08996 * 109.58590 * 186.60200 * 15 6 5 39 39 H 1.08999 * 109.58671 * 66.18082 * 15 6 5 40 40 H 0.97000 * 119.99748 * 24.84039 * 18 16 2 41 41 H 1.08006 * 120.85567 * 0.04057 * 22 21 19 42 42 H 1.07994 * 120.35069 * 179.75234 * 23 22 21 43 43 H 1.08999 * 109.47310 * 90.01960 * 25 24 23 44 44 H 1.07997 * 119.71728 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0400 -0.7207 1.2501 5 6 3.5715 -0.6885 1.2642 6 7 4.0679 -1.2487 -0.0002 7 6 4.9758 -2.2738 -0.0002 8 1 5.0087 -2.9660 0.8281 9 6 5.8539 -2.4231 -1.0648 10 7 6.0602 -1.4214 -1.8933 11 14 6.7430 -4.0459 -1.3217 12 1 5.7474 -5.1291 -1.5232 13 1 7.6161 -3.9478 -2.5189 14 1 7.5716 -4.3508 -0.1277 15 6 3.5713 -0.6884 -1.2644 16 6 2.0398 -0.7207 -1.2501 17 1 1.6978 -1.7556 -1.2389 18 7 1.5254 -0.0486 -2.4460 19 6 1.4000 -0.7313 -3.6012 20 8 1.7133 -1.9048 -3.6509 21 6 0.8804 -0.0533 -4.8078 22 6 0.7409 -0.7525 -6.0130 23 6 0.2557 -0.0703 -7.1145 24 6 -0.0783 1.2666 -6.9899 25 6 -0.6077 2.0130 -8.1872 26 9 -0.2458 3.3611 -8.0938 27 9 -0.0666 1.4648 -9.3551 28 7 0.0591 1.8986 -5.8400 29 6 0.5165 1.2929 -4.7638 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8904 32 1 -0.3634 0.5143 -0.8896 33 1 1.6980 -1.7556 1.2383 34 1 1.6574 -0.2211 2.1400 35 1 3.9419 -1.2843 2.0983 36 1 3.9165 0.3402 1.3684 37 1 6.6741 -1.5257 -2.6371 38 1 3.9416 -1.2843 -2.0986 39 1 3.9142 0.3411 -1.3675 40 1 1.2751 0.8877 -2.4062 41 1 1.0089 -1.7965 -6.0819 42 1 0.1385 -0.5760 -8.0615 43 1 -1.6941 1.9296 -8.2162 44 1 0.6152 1.8442 -3.8404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966570327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:49 Heat of formation + Delta-G solvation = -102.316033 kcal Electronic energy + Delta-G solvation = -29565.181415 eV Core-core repulsion = 25152.747357 eV Total energy + Delta-G solvation = -4412.434057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.02685 -48.04836 -41.88381 -40.60130 -39.10145 -36.17676 -34.87300 -33.92751 -33.36153 -32.79142 -30.62910 -29.04587 -28.09310 -25.90413 -25.07483 -24.55470 -23.35601 -22.65451 -21.71113 -21.01051 -19.29175 -18.81969 -18.62917 -18.54101 -18.34146 -17.49356 -16.93379 -16.53413 -16.24460 -16.09370 -15.72979 -15.47286 -15.30085 -15.05916 -14.88525 -14.78152 -14.57134 -14.43954 -14.26658 -14.21034 -14.05073 -13.67229 -13.53811 -13.28425 -13.06258 -12.72050 -12.59105 -12.37953 -12.36209 -12.20222 -11.92100 -11.64169 -11.61536 -11.23999 -11.19874 -11.16304 -10.70374 -10.56381 -10.48956 -10.12836 -8.70754 -7.91101 -5.36240 -0.73944 -0.02350 1.39843 1.45364 1.50055 1.62349 1.98410 2.27777 2.47848 2.57663 3.06968 3.17632 3.25075 3.48925 3.60436 3.66620 3.77786 3.82723 3.86500 3.98765 4.00754 4.11849 4.16019 4.41764 4.47045 4.56720 4.66394 4.72694 4.73759 4.88150 4.92912 4.98656 5.12343 5.18440 5.18954 5.22719 5.27501 5.39441 5.45863 5.52613 5.60539 5.76332 6.33590 6.44476 6.49928 7.09130 7.15465 7.83756 8.32367 9.13531 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013176 B = 0.003000 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.587279 B = 9332.309229 C =10749.113578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.081 0.919 4 C -0.115 4.115 5 C 0.135 3.865 6 N -0.609 5.609 7 C -0.265 4.265 8 H 0.068 0.932 9 C -0.049 4.049 10 N -0.930 5.930 11 Si 0.961 3.039 12 H -0.284 1.284 13 H -0.295 1.295 14 H -0.268 1.268 15 C 0.177 3.823 16 C 0.141 3.859 17 H 0.054 0.946 18 N -0.696 5.696 19 C 0.554 3.446 20 O -0.575 6.575 21 C -0.175 4.175 22 C -0.025 4.025 23 C -0.136 4.136 24 C 0.060 3.940 25 C 0.328 3.672 26 F -0.201 7.201 27 F -0.197 7.197 28 N -0.471 5.471 29 C 0.143 3.857 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.022 0.978 37 H 0.247 0.753 38 H 0.044 0.956 39 H 0.000 1.000 40 H 0.412 0.588 41 H 0.151 0.849 42 H 0.179 0.821 43 H 0.179 0.821 44 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.545 8.550 -7.607 22.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.100 0.900 4 C -0.155 4.155 5 C 0.010 3.990 6 N -0.333 5.333 7 C -0.395 4.395 8 H 0.086 0.914 9 C -0.245 4.245 10 N -0.576 5.576 11 Si 0.789 3.211 12 H -0.211 1.211 13 H -0.221 1.221 14 H -0.193 1.193 15 C 0.050 3.950 16 C 0.035 3.965 17 H 0.072 0.928 18 N -0.347 5.347 19 C 0.341 3.659 20 O -0.455 6.455 21 C -0.180 4.180 22 C -0.051 4.051 23 C -0.156 4.156 24 C -0.079 4.079 25 C 0.274 3.726 26 F -0.182 7.182 27 F -0.179 7.179 28 N -0.180 5.180 29 C -0.015 4.015 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.018 0.982 40 H 0.250 0.750 41 H 0.169 0.831 42 H 0.197 0.803 43 H 0.195 0.805 44 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -19.405 8.642 -7.701 22.595 hybrid contribution 1.515 -1.462 -0.376 2.139 sum -17.890 7.180 -8.077 20.901 Atomic orbital electron populations 1.21785 0.92835 1.01756 1.02949 1.21286 0.97029 0.99479 0.92696 0.90028 1.21962 0.95550 1.00303 0.97651 1.21189 0.93686 0.96200 0.87941 1.44231 1.48152 1.39826 1.01051 1.19463 1.09781 1.04018 1.06258 0.91419 1.25762 0.98579 1.00230 0.99894 1.70165 1.38439 1.30796 1.18215 0.85440 0.78060 0.80307 0.77324 1.21071 1.22084 1.19294 1.20810 0.89744 0.95101 0.89363 1.21571 0.94820 0.96048 0.84102 0.92779 1.45775 1.64590 1.14881 1.09458 1.18413 0.77680 0.86089 0.83701 1.90814 1.51439 1.18128 1.85080 1.21106 1.04856 0.96865 0.95172 1.21925 0.91234 1.01387 0.90567 1.22076 0.98393 0.94238 1.00845 1.22317 0.97897 0.92990 0.94684 1.20530 1.00005 0.73915 0.78173 1.93014 1.94077 1.34980 1.96137 1.93023 1.89137 1.85538 1.50162 1.67373 1.13209 1.38471 0.98940 1.23248 0.90983 0.89935 0.97371 0.93787 0.90319 0.91693 0.93078 0.88495 0.92691 0.96017 0.94434 0.93754 0.98177 0.75018 0.83096 0.80322 0.80466 0.79308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.02 71.98 0.65 -2.16 16 2 C -0.09 -2.40 2.27 -10.77 -0.02 -2.43 16 3 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 4 C -0.12 -3.48 5.36 30.67 0.16 -3.32 16 5 C 0.13 5.36 6.52 86.36 0.56 5.92 16 6 N -0.61 -31.08 2.99 -699.09 -2.09 -33.18 16 7 C -0.26 -15.12 9.58 84.03 0.81 -14.31 16 8 H 0.07 3.74 7.89 -2.91 -0.02 3.72 16 9 C -0.05 -2.87 4.91 84.86 0.42 -2.46 16 10 N -0.93 -57.66 11.19 21.65 0.24 -57.41 16 11 Si 0.96 47.44 29.59 68.60 2.03 49.47 16 12 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 13 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 14 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 15 C 0.18 8.73 4.89 86.36 0.42 9.15 16 16 C 0.14 5.25 2.06 45.07 0.09 5.34 16 17 H 0.05 2.38 7.58 -2.38 -0.02 2.36 16 18 N -0.70 -21.06 4.33 -445.04 -1.92 -22.98 16 19 C 0.55 18.87 7.75 86.78 0.67 19.54 16 20 O -0.57 -25.59 16.09 -3.88 -0.06 -25.66 16 21 C -0.17 -4.53 5.89 -19.99 -0.12 -4.65 16 22 C -0.02 -0.57 9.72 22.73 0.22 -0.35 16 23 C -0.14 -2.36 9.42 22.33 0.21 -2.15 16 24 C 0.06 1.09 6.58 42.57 0.28 1.37 16 25 C 0.33 4.42 5.72 71.23 0.41 4.83 16 26 F -0.20 -3.90 17.05 44.97 0.77 -3.13 16 27 F -0.20 -3.01 16.45 44.97 0.74 -2.27 16 28 N -0.47 -10.04 9.94 -182.82 -1.82 -11.86 16 29 C 0.14 3.01 10.71 85.02 0.91 3.92 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.06 1.14 7.35 -2.39 -0.02 1.13 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.05 2.15 7.93 -2.39 -0.02 2.14 16 36 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 38 H 0.04 2.64 6.03 -2.39 -0.01 2.63 16 39 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 40 H 0.41 8.94 6.37 -92.71 -0.59 8.35 16 41 H 0.15 3.61 7.74 -2.91 -0.02 3.59 16 42 H 0.18 2.02 7.59 -2.91 -0.02 2.00 16 43 H 0.18 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.19 2.84 6.42 -2.91 -0.02 2.82 16 Total: -1.00 -78.97 367.68 4.00 -74.96 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.45 Total: 13.82 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 5.67 Total: 18.25 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -5.59 Total: -125.43 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.06 Total: -25.66 kcal Atomic # 9 Polarization: -6.91 SS G_CDS: 1.51 Total: -5.40 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -78.97 4.00 -74.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966570327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.353 kcal (2) G-P(sol) polarization free energy of solvation -78.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds