Wall clock time and date at job start Wed Apr 1 2020 00:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.44868 * 2 1 4 4 C 1.53046 * 109.46087 * 119.96271 * 2 1 3 5 5 C 1.53189 * 109.31359 * 181.38246 * 4 2 1 6 6 N 1.46924 * 108.77616 * 305.36676 * 5 4 2 7 7 C 1.36933 * 120.62892 * 233.62437 * 6 5 4 8 8 H 1.08001 * 120.00091 * 27.68130 * 7 6 5 9 9 C 1.38810 * 120.00125 * 207.67626 * 7 6 5 10 10 N 1.31615 * 120.00084 * 17.35492 * 9 7 6 11 11 Si 1.86806 * 120.00216 * 197.35589 * 9 7 6 12 12 H 1.48494 * 109.47077 * 90.00177 * 11 9 7 13 13 H 1.48503 * 109.47121 * 210.00320 * 11 9 7 14 14 H 1.48499 * 109.47050 * 330.00244 * 11 9 7 15 15 C 1.46921 * 118.73954 * 53.61043 * 6 5 4 16 16 C 1.53042 * 109.45968 * 240.03091 * 2 1 3 17 17 H 1.08996 * 109.52253 * 58.64595 * 16 2 1 18 18 N 1.46504 * 109.49749 * 298.56535 * 16 2 1 19 19 C 1.34772 * 119.99698 * 155.16019 * 18 16 2 20 20 O 1.21547 * 120.00235 * 0.02562 * 19 18 16 21 21 C 1.47838 * 119.99689 * 179.97438 * 19 18 16 22 22 C 1.40024 * 120.55766 * 179.72467 * 21 19 18 23 23 C 1.38362 * 118.28566 * 179.73775 * 22 21 19 24 24 C 1.38351 * 119.30564 * 0.56199 * 23 22 21 25 25 C 1.50695 * 119.46308 * 179.67911 * 24 23 22 26 26 F 1.39898 * 109.47133 * 300.01761 * 25 24 23 27 27 F 1.39901 * 109.47346 * 60.01751 * 25 24 23 28 28 N 1.31923 * 121.07800 * 359.69827 * 24 23 22 29 29 C 1.31696 * 121.88176 * 0.02562 * 28 24 23 30 30 H 1.09002 * 109.47277 * 300.03427 * 1 2 3 31 31 H 1.08997 * 109.46885 * 60.03356 * 1 2 3 32 32 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.49741 * 61.43316 * 4 2 1 34 34 H 1.09000 * 109.49566 * 301.33959 * 4 2 1 35 35 H 1.09005 * 109.58229 * 65.15269 * 5 4 2 36 36 H 1.08998 * 109.58981 * 185.43546 * 5 4 2 37 37 H 0.97003 * 120.00512 * 179.97438 * 10 9 7 38 38 H 1.08999 * 109.59084 * 66.17549 * 15 6 5 39 39 H 1.09004 * 109.58792 * 186.60322 * 15 6 5 40 40 H 0.97001 * 119.99551 * 335.16465 * 18 16 2 41 41 H 1.07992 * 120.85883 * 0.02562 * 22 21 19 42 42 H 1.08000 * 120.34914 * 180.25664 * 23 22 21 43 43 H 1.09003 * 109.47291 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.71905 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7207 1.2502 5 6 3.5714 -0.6886 1.2643 6 7 4.0678 -1.2489 0.0001 7 6 4.9757 -2.2740 0.0002 8 1 5.0084 -2.9663 0.8284 9 6 5.8540 -2.4233 -1.0643 10 7 6.0603 -1.4217 -1.8928 11 14 6.7432 -4.0460 -1.3211 12 1 5.9258 -4.9255 -2.1949 13 1 8.0580 -3.7937 -1.9636 14 1 6.9526 -4.7087 -0.0088 15 6 3.5714 -0.6887 -1.2642 16 6 2.0398 -0.7208 -1.2501 17 1 1.6572 -0.2214 -2.1401 18 7 1.5801 -2.1118 -1.2342 19 6 1.4546 -2.7932 -2.3901 20 8 1.7233 -2.2540 -3.4458 21 6 0.9913 -4.1970 -2.3740 22 6 0.8512 -4.9142 -3.5684 23 6 0.4194 -6.2268 -3.4983 24 6 0.1312 -6.7798 -2.2633 25 6 -0.3463 -8.2069 -2.1833 26 9 -1.5354 -8.3420 -2.9079 27 9 0.6270 -9.0553 -2.7220 28 7 0.2673 -6.0781 -1.1544 29 6 0.6801 -4.8276 -1.1689 30 1 -0.3634 0.5144 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3634 -1.0276 0.0005 33 1 1.6978 -1.7556 1.2385 34 1 1.6572 -0.2206 2.1399 35 1 3.9143 0.3410 1.3673 36 1 3.9416 -1.2824 2.1000 37 1 6.6743 -1.5259 -2.6365 38 1 3.9143 0.3408 -1.3673 39 1 3.9417 -1.2847 -2.0983 40 1 1.3660 -2.5421 -0.3916 41 1 1.0789 -4.4561 -4.5195 42 1 0.3037 -6.8121 -4.3985 43 1 -0.5238 -8.4728 -1.1412 44 1 0.7794 -4.2858 -0.2399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966570328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:54 Heat of formation + Delta-G solvation = -79.910729 kcal Electronic energy + Delta-G solvation = -30357.350144 eV Core-core repulsion = 25945.887653 eV Total energy + Delta-G solvation = -4411.462490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.30615 -47.29086 -40.74706 -39.36494 -37.56903 -34.25985 -33.21714 -32.89823 -32.13903 -31.06628 -29.36109 -27.60782 -26.97558 -24.18370 -24.01589 -23.32529 -22.17971 -21.17042 -20.73188 -18.84655 -18.34689 -17.85005 -17.54361 -17.54187 -16.80702 -16.23702 -15.16318 -15.09804 -15.07009 -14.67448 -14.47698 -14.22470 -13.91220 -13.82664 -13.66118 -13.64236 -13.45983 -13.38891 -13.27238 -12.96494 -12.72039 -12.59208 -12.01683 -11.65494 -11.57969 -11.45873 -11.17985 -10.95942 -10.78012 -10.57128 -10.27003 -10.17943 -10.14123 -9.97597 -9.75683 -9.58728 -9.49262 -9.46908 -8.52326 -8.49229 -6.70639 -5.81377 -3.24281 0.31059 0.96248 2.87354 3.02724 3.35335 3.42309 3.42897 3.43837 3.75192 3.85805 4.12541 4.44544 4.46462 4.61723 4.72511 4.77977 4.89228 5.03518 5.12212 5.16564 5.27664 5.30045 5.36862 5.49732 5.69687 5.80245 5.85503 5.87311 5.94497 6.08519 6.19809 6.21248 6.28983 6.37432 6.46099 6.56051 6.69031 6.79478 6.90164 7.27637 7.42397 7.60318 7.76357 7.89537 8.41741 8.54545 9.17103 9.81148 10.36389 11.26490 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010492 B = 0.004134 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.027184 B = 6770.847701 C = 8258.833391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.080 0.920 4 C -0.129 4.129 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.255 4.255 8 H 0.065 0.935 9 C 0.009 3.991 10 N -0.897 5.897 11 Si 0.895 3.105 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.279 1.279 15 C 0.160 3.840 16 C 0.125 3.875 17 H 0.079 0.921 18 N -0.687 5.687 19 C 0.558 3.442 20 O -0.534 6.534 21 C -0.148 4.148 22 C -0.020 4.020 23 C -0.139 4.139 24 C 0.058 3.942 25 C 0.325 3.675 26 F -0.194 7.194 27 F -0.192 7.192 28 N -0.460 5.460 29 C 0.137 3.863 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.019 0.981 36 H 0.054 0.946 37 H 0.254 0.746 38 H 0.027 0.973 39 H 0.098 0.902 40 H 0.394 0.606 41 H 0.156 0.844 42 H 0.146 0.854 43 H 0.133 0.867 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.347 -6.081 1.848 16.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.098 0.902 4 C -0.169 4.169 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.385 4.385 8 H 0.082 0.918 9 C -0.191 4.191 10 N -0.540 5.540 11 Si 0.725 3.275 12 H -0.216 1.216 13 H -0.216 1.216 14 H -0.204 1.204 15 C 0.033 3.967 16 C 0.020 3.980 17 H 0.097 0.903 18 N -0.337 5.337 19 C 0.343 3.657 20 O -0.412 6.412 21 C -0.153 4.153 22 C -0.046 4.046 23 C -0.159 4.159 24 C -0.080 4.080 25 C 0.271 3.729 26 F -0.175 7.175 27 F -0.173 7.173 28 N -0.169 5.169 29 C -0.022 4.022 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.116 0.884 40 H 0.230 0.770 41 H 0.173 0.827 42 H 0.164 0.836 43 H 0.150 0.850 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -15.204 -6.078 1.746 16.467 hybrid contribution 0.757 -0.694 -0.682 1.233 sum -14.447 -6.771 1.064 15.991 Atomic orbital electron populations 1.21858 0.95923 1.01335 1.01123 1.21327 0.94632 1.00024 0.95364 0.90204 1.22090 0.99296 0.99298 0.96174 1.20936 0.90636 0.96635 0.90276 1.43988 1.48296 1.39576 0.99137 1.19092 1.10112 1.03092 1.06195 0.91772 1.24988 0.97122 0.97119 0.99854 1.69992 1.37431 1.28884 1.17722 0.86409 0.79045 0.84054 0.78001 1.21553 1.21648 1.20422 1.21216 0.86466 0.97963 0.91075 1.21887 0.99146 0.79805 0.97193 0.90316 1.45760 1.65904 1.14305 1.07780 1.17773 0.78461 0.84792 0.84716 1.90775 1.50474 1.69281 1.30678 1.21359 1.02005 0.96742 0.95241 1.21788 0.91134 0.92533 0.99179 1.21874 0.99232 0.96023 0.98747 1.21601 0.99848 0.96125 0.90460 1.20096 0.73436 0.84816 0.94587 1.93027 1.47202 1.96254 1.81019 1.93042 1.63642 1.72012 1.88626 1.67197 1.12309 1.07609 1.29766 1.22940 0.92138 0.89660 0.97480 0.93006 0.93027 0.93131 0.92863 0.92597 0.96360 0.92739 0.93550 0.95475 0.88424 0.76961 0.82654 0.83585 0.84954 0.81532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.05 37.16 0.34 -1.37 16 2 C -0.09 -1.36 2.48 -90.58 -0.22 -1.59 16 3 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 4 C -0.13 -1.88 5.20 -26.61 -0.14 -2.02 16 5 C 0.14 2.67 6.51 -3.71 -0.02 2.65 16 6 N -0.59 -13.60 2.91 -172.32 -0.50 -14.10 16 7 C -0.26 -6.70 9.59 -15.06 -0.14 -6.84 16 8 H 0.06 1.66 7.89 -52.49 -0.41 1.25 16 9 C 0.01 0.24 4.91 -17.43 -0.09 0.15 16 10 N -0.90 -25.97 11.19 55.49 0.62 -25.35 16 11 Si 0.89 21.92 29.59 -169.99 -5.03 16.89 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.16 3.65 4.91 -3.71 -0.02 3.63 16 16 C 0.13 2.22 2.24 -67.81 -0.15 2.07 16 17 H 0.08 1.44 7.58 -51.93 -0.39 1.05 16 18 N -0.69 -11.33 4.21 -54.63 -0.23 -11.56 16 19 C 0.56 9.94 7.75 -12.33 -0.10 9.84 16 20 O -0.53 -11.30 16.09 5.32 0.09 -11.22 16 21 C -0.15 -2.23 5.89 -104.82 -0.62 -2.85 16 22 C -0.02 -0.27 9.72 -38.87 -0.38 -0.65 16 23 C -0.14 -1.66 9.60 -39.49 -0.38 -2.04 16 24 C 0.06 0.71 6.28 -82.51 -0.52 0.19 16 25 C 0.33 3.26 5.54 36.00 0.20 3.45 16 26 F -0.19 -2.03 17.25 2.25 0.04 -1.99 16 27 F -0.19 -2.18 17.25 2.25 0.04 -2.14 16 28 N -0.46 -6.02 10.23 -9.14 -0.09 -6.12 16 29 C 0.14 1.82 10.71 -17.13 -0.18 1.64 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.57 7.54 -51.93 -0.39 0.18 16 33 H 0.05 0.75 6.40 -51.93 -0.33 0.42 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 1.02 7.94 -51.93 -0.41 0.61 16 37 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 2.66 6.04 -51.93 -0.31 2.35 16 40 H 0.39 5.69 4.70 -40.82 -0.19 5.50 16 41 H 0.16 2.03 7.74 -52.49 -0.41 1.62 16 42 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.13 1.00 8.10 -51.93 -0.42 0.58 16 44 H 0.17 1.87 6.42 -52.49 -0.34 1.53 16 LS Contribution 365.96 15.07 5.51 5.51 Total: -1.00 -31.51 365.96 -7.69 -39.20 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.71 Total: 4.60 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -2.42 Total: 6.27 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -0.20 Total: -57.13 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.08 Total: -4.13 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.51 -7.69 -39.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966570328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.715 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds