Wall clock time and date at job start Wed Apr 1 2020 00:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.44868 * 2 1 4 4 C 1.53046 * 109.46087 * 119.96271 * 2 1 3 5 5 C 1.53189 * 109.31359 * 181.38246 * 4 2 1 6 6 N 1.46924 * 108.77616 * 305.36676 * 5 4 2 7 7 C 1.36933 * 120.62892 * 233.62437 * 6 5 4 8 8 H 1.08001 * 120.00091 * 27.68130 * 7 6 5 9 9 C 1.38810 * 120.00125 * 207.67626 * 7 6 5 10 10 N 1.31615 * 120.00084 * 17.35492 * 9 7 6 11 11 Si 1.86806 * 120.00216 * 197.35589 * 9 7 6 12 12 H 1.48494 * 109.47077 * 90.00177 * 11 9 7 13 13 H 1.48503 * 109.47121 * 210.00320 * 11 9 7 14 14 H 1.48499 * 109.47050 * 330.00244 * 11 9 7 15 15 C 1.46921 * 118.73954 * 53.61043 * 6 5 4 16 16 C 1.53042 * 109.45968 * 240.03091 * 2 1 3 17 17 H 1.08996 * 109.52253 * 58.64595 * 16 2 1 18 18 N 1.46504 * 109.49749 * 298.56535 * 16 2 1 19 19 C 1.34772 * 119.99698 * 155.16019 * 18 16 2 20 20 O 1.21547 * 120.00235 * 0.02562 * 19 18 16 21 21 C 1.47838 * 119.99689 * 179.97438 * 19 18 16 22 22 C 1.40024 * 120.55766 * 179.72467 * 21 19 18 23 23 C 1.38362 * 118.28566 * 179.73775 * 22 21 19 24 24 C 1.38351 * 119.30564 * 0.56199 * 23 22 21 25 25 C 1.50695 * 119.46308 * 179.67911 * 24 23 22 26 26 F 1.39898 * 109.47133 * 300.01761 * 25 24 23 27 27 F 1.39901 * 109.47346 * 60.01751 * 25 24 23 28 28 N 1.31923 * 121.07800 * 359.69827 * 24 23 22 29 29 C 1.31696 * 121.88176 * 0.02562 * 28 24 23 30 30 H 1.09002 * 109.47277 * 300.03427 * 1 2 3 31 31 H 1.08997 * 109.46885 * 60.03356 * 1 2 3 32 32 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.49741 * 61.43316 * 4 2 1 34 34 H 1.09000 * 109.49566 * 301.33959 * 4 2 1 35 35 H 1.09005 * 109.58229 * 65.15269 * 5 4 2 36 36 H 1.08998 * 109.58981 * 185.43546 * 5 4 2 37 37 H 0.97003 * 120.00512 * 179.97438 * 10 9 7 38 38 H 1.08999 * 109.59084 * 66.17549 * 15 6 5 39 39 H 1.09004 * 109.58792 * 186.60322 * 15 6 5 40 40 H 0.97001 * 119.99551 * 335.16465 * 18 16 2 41 41 H 1.07992 * 120.85883 * 0.02562 * 22 21 19 42 42 H 1.08000 * 120.34914 * 180.25664 * 23 22 21 43 43 H 1.09003 * 109.47291 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.71905 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7207 1.2502 5 6 3.5714 -0.6886 1.2643 6 7 4.0678 -1.2489 0.0001 7 6 4.9757 -2.2740 0.0002 8 1 5.0084 -2.9663 0.8284 9 6 5.8540 -2.4233 -1.0643 10 7 6.0603 -1.4217 -1.8928 11 14 6.7432 -4.0460 -1.3211 12 1 5.9258 -4.9255 -2.1949 13 1 8.0580 -3.7937 -1.9636 14 1 6.9526 -4.7087 -0.0088 15 6 3.5714 -0.6887 -1.2642 16 6 2.0398 -0.7208 -1.2501 17 1 1.6572 -0.2214 -2.1401 18 7 1.5801 -2.1118 -1.2342 19 6 1.4546 -2.7932 -2.3901 20 8 1.7233 -2.2540 -3.4458 21 6 0.9913 -4.1970 -2.3740 22 6 0.8512 -4.9142 -3.5684 23 6 0.4194 -6.2268 -3.4983 24 6 0.1312 -6.7798 -2.2633 25 6 -0.3463 -8.2069 -2.1833 26 9 -1.5354 -8.3420 -2.9079 27 9 0.6270 -9.0553 -2.7220 28 7 0.2673 -6.0781 -1.1544 29 6 0.6801 -4.8276 -1.1689 30 1 -0.3634 0.5144 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3634 -1.0276 0.0005 33 1 1.6978 -1.7556 1.2385 34 1 1.6572 -0.2206 2.1399 35 1 3.9143 0.3410 1.3673 36 1 3.9416 -1.2824 2.1000 37 1 6.6743 -1.5259 -2.6365 38 1 3.9143 0.3408 -1.3673 39 1 3.9417 -1.2847 -2.0983 40 1 1.3660 -2.5421 -0.3916 41 1 1.0789 -4.4561 -4.5195 42 1 0.3037 -6.8121 -4.3985 43 1 -0.5238 -8.4728 -1.1412 44 1 0.7794 -4.2858 -0.2399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966570328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:53 Heat of formation + Delta-G solvation = -99.281395 kcal Electronic energy + Delta-G solvation = -30358.190119 eV Core-core repulsion = 25945.887653 eV Total energy + Delta-G solvation = -4412.302466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.12214 -48.11070 -41.90183 -40.67874 -39.03492 -35.97976 -34.60690 -33.97908 -33.27654 -32.77636 -30.84626 -28.99635 -28.14396 -25.85689 -25.05122 -24.51107 -23.55155 -22.74479 -21.96234 -20.35636 -19.44568 -18.87165 -18.58174 -18.50184 -18.35962 -17.33409 -16.91303 -16.46586 -16.23376 -16.00011 -15.79977 -15.57050 -15.21496 -15.06322 -14.89035 -14.74850 -14.56117 -14.47977 -14.42934 -14.35547 -14.08514 -13.60112 -13.55842 -13.15119 -13.00958 -12.74160 -12.64775 -12.49112 -12.39729 -12.22539 -11.94574 -11.55481 -11.45077 -11.23583 -11.20356 -11.06104 -10.76514 -10.56911 -10.54558 -10.00665 -8.65310 -7.87543 -5.31353 -0.76415 -0.05991 1.37770 1.40875 1.47495 1.64652 2.08037 2.19029 2.46482 2.56061 3.09644 3.21493 3.28320 3.52478 3.56974 3.67899 3.70398 3.82886 3.89928 3.92108 4.00475 4.10446 4.13621 4.35958 4.52351 4.64975 4.68801 4.72618 4.79735 4.87873 4.91430 4.97910 5.10026 5.18777 5.19684 5.26356 5.27674 5.47947 5.51658 5.59608 5.67891 5.71966 6.38514 6.39985 6.53747 7.14139 7.18965 7.87759 8.37801 9.17323 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010492 B = 0.004134 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.027184 B = 6770.847701 C = 8258.833391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.078 0.922 4 C -0.117 4.117 5 C 0.135 3.865 6 N -0.600 5.600 7 C -0.246 4.246 8 H 0.071 0.929 9 C -0.047 4.047 10 N -0.932 5.932 11 Si 0.947 3.053 12 H -0.297 1.297 13 H -0.298 1.298 14 H -0.262 1.262 15 C 0.170 3.830 16 C 0.137 3.863 17 H 0.068 0.932 18 N -0.677 5.677 19 C 0.554 3.446 20 O -0.578 6.578 21 C -0.170 4.170 22 C -0.027 4.027 23 C -0.138 4.138 24 C 0.057 3.943 25 C 0.330 3.670 26 F -0.195 7.195 27 F -0.199 7.199 28 N -0.462 5.462 29 C 0.142 3.858 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.013 0.987 36 H 0.058 0.942 37 H 0.244 0.756 38 H -0.001 1.001 39 H 0.049 0.951 40 H 0.407 0.593 41 H 0.153 0.847 42 H 0.170 0.830 43 H 0.164 0.836 44 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.734 -7.606 4.192 19.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.107 4.107 3 H 0.096 0.904 4 C -0.156 4.156 5 C 0.010 3.990 6 N -0.323 5.323 7 C -0.377 4.377 8 H 0.089 0.911 9 C -0.243 4.243 10 N -0.579 5.579 11 Si 0.777 3.223 12 H -0.225 1.225 13 H -0.225 1.225 14 H -0.186 1.186 15 C 0.042 3.958 16 C 0.030 3.970 17 H 0.086 0.914 18 N -0.328 5.328 19 C 0.341 3.659 20 O -0.460 6.460 21 C -0.176 4.176 22 C -0.053 4.053 23 C -0.157 4.157 24 C -0.082 4.082 25 C 0.276 3.724 26 F -0.176 7.176 27 F -0.180 7.180 28 N -0.171 5.171 29 C -0.017 4.017 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.031 0.969 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.017 0.983 39 H 0.068 0.932 40 H 0.245 0.755 41 H 0.170 0.830 42 H 0.187 0.813 43 H 0.181 0.819 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -17.626 -7.620 4.160 19.648 hybrid contribution 1.493 -0.215 -1.396 2.056 sum -16.133 -7.835 2.764 18.146 Atomic orbital electron populations 1.21776 0.92969 1.02260 1.02354 1.21285 0.96907 0.99239 0.93219 0.90388 1.21978 0.95483 1.00564 0.97544 1.21160 0.93797 0.95939 0.88119 1.44188 1.48065 1.39394 1.00692 1.19435 1.09262 1.03448 1.05537 0.91098 1.25627 0.98756 0.99449 1.00470 1.70155 1.38710 1.30635 1.18397 0.85553 0.77461 0.81102 0.78184 1.22502 1.22541 1.18588 1.20894 0.89987 0.95185 0.89688 1.21563 0.95288 0.81075 0.99031 0.91378 1.45628 1.65197 1.13793 1.08161 1.18254 0.77556 0.85834 0.84272 1.90747 1.52468 1.70524 1.32220 1.21204 1.04251 0.95395 0.96708 1.21907 0.91193 0.93371 0.98871 1.22124 0.98401 0.95318 0.99892 1.22093 0.98617 0.97196 0.90275 1.20291 0.72941 0.83262 0.95906 1.93028 1.47215 1.96130 1.81264 1.93033 1.64077 1.72044 1.88888 1.67291 1.12483 1.07314 1.29987 1.23193 0.91227 0.89853 0.97434 0.90493 0.93151 0.92360 0.91725 0.88931 0.96930 0.92373 0.94634 0.98319 0.93248 0.75490 0.82950 0.81296 0.81900 0.79551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.05 71.98 0.65 -2.06 16 2 C -0.09 -2.33 2.48 -10.76 -0.03 -2.36 16 3 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 4 C -0.12 -3.00 5.20 30.67 0.16 -2.84 16 5 C 0.13 4.88 6.51 86.36 0.56 5.44 16 6 N -0.60 -27.96 2.91 -699.11 -2.04 -30.00 16 7 C -0.25 -12.97 9.59 84.03 0.81 -12.17 16 8 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 9 C -0.05 -2.67 4.91 84.86 0.42 -2.25 16 10 N -0.93 -56.63 11.19 21.65 0.24 -56.39 16 11 Si 0.95 45.97 29.59 68.60 2.03 48.00 16 12 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 13 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 14 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 15 C 0.17 8.07 4.91 86.36 0.42 8.50 16 16 C 0.14 4.87 2.24 45.07 0.10 4.97 16 17 H 0.07 2.58 7.58 -2.39 -0.02 2.57 16 18 N -0.68 -21.98 4.21 -445.05 -1.87 -23.85 16 19 C 0.55 20.07 7.75 86.79 0.67 20.74 16 20 O -0.58 -25.70 16.09 -3.86 -0.06 -25.76 16 21 C -0.17 -5.05 5.89 -19.99 -0.12 -5.17 16 22 C -0.03 -0.73 9.72 22.73 0.22 -0.51 16 23 C -0.14 -3.08 9.60 22.33 0.21 -2.86 16 24 C 0.06 1.25 6.28 42.57 0.27 1.52 16 25 C 0.33 5.63 5.54 71.23 0.39 6.03 16 26 F -0.20 -3.56 17.25 44.97 0.78 -2.78 16 27 F -0.20 -4.02 17.25 44.97 0.78 -3.24 16 28 N -0.46 -10.90 10.23 -182.82 -1.87 -12.77 16 29 C 0.14 3.50 10.71 85.02 0.91 4.41 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.08 7.54 -2.39 -0.02 1.07 16 33 H 0.06 1.55 6.40 -2.39 -0.02 1.53 16 34 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 36 H 0.06 2.05 7.94 -2.39 -0.02 2.03 16 37 H 0.24 14.72 8.31 -92.71 -0.77 13.94 16 38 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 39 H 0.05 2.85 6.04 -2.38 -0.01 2.83 16 40 H 0.41 10.89 4.70 -92.71 -0.44 10.46 16 41 H 0.15 4.12 7.74 -2.91 -0.02 4.09 16 42 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 43 H 0.16 1.84 8.10 -2.39 -0.02 1.83 16 44 H 0.19 3.66 6.42 -2.91 -0.02 3.64 16 Total: -1.00 -71.85 365.96 4.24 -67.61 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.61 Total: 17.79 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 5.66 Total: 21.39 kcal Atomic # 7 Polarization: -117.47 SS G_CDS: -5.54 Total: -123.01 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.06 Total: -25.76 kcal Atomic # 9 Polarization: -7.57 SS G_CDS: 1.55 Total: -6.02 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -71.85 4.24 -67.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966570328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.671 kcal (2) G-P(sol) polarization free energy of solvation -71.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds