Wall clock time and date at job start Wed Apr 1 2020 00:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.46237 * 2 1 4 4 C 1.53035 * 109.46225 * 240.03446 * 2 1 3 5 5 C 1.53191 * 109.31490 * 178.61519 * 4 2 1 6 6 N 1.46929 * 108.77630 * 54.63601 * 5 4 2 7 7 C 1.36933 * 120.62918 * 126.41151 * 6 5 4 8 8 H 1.07994 * 120.00720 * 332.61622 * 7 6 5 9 9 C 1.38815 * 119.99901 * 152.61325 * 7 6 5 10 10 N 1.31619 * 120.00348 * 159.35044 * 9 7 6 11 11 Si 1.86798 * 119.99896 * 339.35475 * 9 7 6 12 12 H 1.48510 * 109.47229 * 92.91661 * 11 9 7 13 13 H 1.48495 * 109.47252 * 212.91734 * 11 9 7 14 14 H 1.48499 * 109.47096 * 332.91702 * 11 9 7 15 15 C 1.46926 * 118.73697 * 306.39303 * 6 5 4 16 16 C 1.53048 * 109.45726 * 119.96923 * 2 1 3 17 17 H 1.08995 * 109.49712 * 301.36627 * 16 2 1 18 18 N 1.46498 * 109.50048 * 61.43430 * 16 2 1 19 19 C 1.34774 * 119.99943 * 204.99911 * 18 16 2 20 20 O 1.21554 * 120.00221 * 359.97438 * 19 18 16 21 21 C 1.47838 * 119.99696 * 180.02562 * 19 18 16 22 22 C 1.40031 * 120.55847 * 180.02562 * 21 19 18 23 23 C 1.38352 * 118.28854 * 179.72545 * 22 21 19 24 24 C 1.38351 * 119.30344 * 359.97438 * 23 22 21 25 25 C 1.50702 * 119.45817 * 180.02562 * 24 23 22 26 26 F 1.39900 * 109.47327 * 210.00045 * 25 24 23 27 27 F 1.39899 * 109.47403 * 330.00252 * 25 24 23 28 28 N 1.31924 * 121.08167 * 359.97438 * 24 23 22 29 29 C 1.31691 * 121.87834 * 0.04501 * 28 24 23 30 30 H 1.08999 * 109.47323 * 300.02962 * 1 2 3 31 31 H 1.08995 * 109.47012 * 60.03485 * 1 2 3 32 32 H 1.09003 * 109.47249 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.49903 * 298.56915 * 4 2 1 34 34 H 1.09001 * 109.49850 * 58.66170 * 4 2 1 35 35 H 1.09000 * 109.58898 * 174.42622 * 5 4 2 36 36 H 1.09003 * 109.59009 * 294.70681 * 5 4 2 37 37 H 0.96993 * 120.00000 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.58413 * 293.81875 * 15 6 5 39 39 H 1.09006 * 109.58449 * 173.39303 * 15 6 5 40 40 H 0.97004 * 119.99823 * 24.99734 * 18 16 2 41 41 H 1.07998 * 120.85590 * 359.73493 * 22 21 19 42 42 H 1.08005 * 120.34544 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47334 * 90.00195 * 25 24 23 44 44 H 1.08001 * 119.71409 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7207 -1.2500 5 6 3.5714 -0.6885 -1.2642 6 7 4.0679 -1.2488 0.0001 7 6 4.9764 -2.2734 0.0000 8 1 5.0129 -2.9627 -0.8305 9 6 5.8505 -2.4260 1.0675 10 7 6.4272 -3.5890 1.2849 11 14 6.2082 -0.9808 2.1957 12 1 5.2790 -1.0149 3.3537 13 1 7.6086 -1.0672 2.6820 14 1 6.0212 0.2887 1.4483 15 6 3.5713 -0.6886 1.2643 16 6 2.0398 -0.7209 1.2501 17 1 1.6567 -0.2212 2.1398 18 7 1.5801 -2.1118 1.2343 19 6 1.4515 -2.7922 2.3905 20 8 1.7174 -2.2520 3.4465 21 6 0.9881 -4.1960 2.3744 22 6 0.8498 -4.9138 3.5687 23 6 0.4071 -6.2228 3.4995 24 6 0.1175 -6.7752 2.2646 25 6 -0.3655 -8.2005 2.1852 26 9 0.0406 -8.7636 0.9706 27 9 0.1763 -8.9363 3.2445 28 7 0.2563 -6.0744 1.1555 29 6 0.6745 -4.8258 1.1696 30 1 -0.3634 0.5143 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3634 -1.0277 0.0005 33 1 1.6978 -1.7556 -1.2383 34 1 1.6572 -0.2207 -2.1398 35 1 3.9417 -1.2844 -2.0984 36 1 3.9143 0.3407 -1.3698 37 1 7.0383 -3.6954 2.0306 38 1 3.9143 0.3409 1.3674 39 1 3.9416 -1.2846 2.0985 40 1 1.3682 -2.5429 0.3916 41 1 1.0826 -4.4574 4.5194 42 1 0.2889 -6.8072 4.4001 43 1 -1.4535 -8.2196 2.2486 44 1 0.7758 -4.2847 0.2404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966570329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:58 Heat of formation + Delta-G solvation = -72.933195 kcal Electronic energy + Delta-G solvation = -30444.453637 eV Core-core repulsion = 26033.293715 eV Total energy + Delta-G solvation = -4411.159922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.18174 -47.18368 -40.74462 -39.50615 -37.74745 -34.41182 -33.27806 -32.81259 -32.19673 -31.40563 -29.78751 -27.83321 -27.02256 -24.06834 -23.93670 -23.44989 -22.52212 -21.29751 -20.79537 -19.01507 -18.34792 -17.79279 -17.69762 -17.39507 -16.87106 -16.20806 -15.45715 -15.22173 -15.19310 -14.72564 -14.64173 -14.12036 -13.99249 -13.94218 -13.64097 -13.55613 -13.43974 -13.35858 -13.31778 -13.12488 -12.76919 -12.70764 -12.21723 -12.05696 -11.73526 -11.54374 -11.51253 -11.20950 -10.67480 -10.59034 -10.32222 -10.16780 -10.09415 -9.95938 -9.84941 -9.51134 -9.46279 -9.39761 -8.82433 -8.48957 -6.99168 -5.96177 -3.32584 0.36026 1.02076 2.85053 3.14790 3.35967 3.38772 3.48915 3.50541 3.74804 3.83074 4.07526 4.51960 4.53611 4.64104 4.66489 4.82436 4.89660 4.93893 4.95049 5.04335 5.06006 5.13441 5.34447 5.40265 5.65654 5.67539 5.72016 5.79977 5.90115 5.91149 6.00336 6.04782 6.13604 6.23386 6.26690 6.30425 6.43632 6.56354 6.62188 6.74866 6.87456 7.51664 7.76443 7.93527 8.30429 8.44479 8.91081 9.70680 10.06681 11.19273 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011631 B = 0.003933 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.788539 B = 7117.073031 C = 8021.848428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.081 0.919 4 C -0.131 4.131 5 C 0.145 3.855 6 N -0.601 5.601 7 C -0.262 4.262 8 H 0.085 0.915 9 C 0.028 3.972 10 N -0.905 5.905 11 Si 0.875 3.125 12 H -0.284 1.284 13 H -0.303 1.303 14 H -0.271 1.271 15 C 0.112 3.888 16 C 0.134 3.866 17 H 0.083 0.917 18 N -0.689 5.689 19 C 0.562 3.438 20 O -0.538 6.538 21 C -0.154 4.154 22 C -0.017 4.017 23 C -0.147 4.147 24 C 0.060 3.940 25 C 0.329 3.671 26 F -0.185 7.185 27 F -0.194 7.194 28 N -0.457 5.457 29 C 0.143 3.857 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.024 0.976 37 H 0.262 0.738 38 H 0.034 0.966 39 H 0.081 0.919 40 H 0.398 0.602 41 H 0.155 0.845 42 H 0.150 0.850 43 H 0.130 0.870 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.114 -1.366 0.406 18.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.099 0.901 4 C -0.170 4.170 5 C 0.019 3.981 6 N -0.325 5.325 7 C -0.390 4.390 8 H 0.103 0.897 9 C -0.171 4.171 10 N -0.547 5.547 11 Si 0.705 3.295 12 H -0.212 1.212 13 H -0.232 1.232 14 H -0.196 1.196 15 C -0.014 4.014 16 C 0.028 3.972 17 H 0.101 0.899 18 N -0.340 5.340 19 C 0.348 3.652 20 O -0.417 6.417 21 C -0.159 4.159 22 C -0.043 4.043 23 C -0.167 4.167 24 C -0.078 4.078 25 C 0.274 3.726 26 F -0.166 7.166 27 F -0.175 7.175 28 N -0.165 5.165 29 C -0.016 4.016 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.099 0.901 40 H 0.235 0.765 41 H 0.172 0.828 42 H 0.168 0.832 43 H 0.147 0.853 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -17.948 -1.497 0.411 18.015 hybrid contribution 0.726 0.833 1.085 1.548 sum -17.222 -0.665 1.496 17.300 Atomic orbital electron populations 1.21843 0.95432 1.01620 1.01313 1.21327 0.95128 0.99912 0.95006 0.90061 1.22093 0.98900 0.99776 0.96272 1.20962 0.90857 0.96760 0.89527 1.44307 1.48805 1.40312 0.99065 1.18832 1.09892 1.02834 1.07429 0.89749 1.25249 0.97286 0.96494 0.98072 1.69828 1.32390 1.21970 1.30523 0.87055 0.76447 0.84863 0.81104 1.21186 1.23158 1.19580 1.21795 0.91047 0.97645 0.90940 1.21576 0.96926 0.80704 0.97961 0.89868 1.45709 1.66201 1.13931 1.08169 1.17826 0.77977 0.84960 0.84464 1.90764 1.50748 1.69403 1.30746 1.21245 1.02762 0.96450 0.95419 1.21745 0.91031 0.92566 0.99001 1.21809 1.00184 0.96026 0.98677 1.21804 0.99275 0.96234 0.90517 1.20064 0.97558 0.83099 0.71853 1.93050 1.92653 1.86054 1.44815 1.93023 1.88806 1.78511 1.57184 1.67265 1.12294 1.07309 1.29613 1.22940 0.91690 0.89699 0.97307 0.92932 0.92745 0.92890 0.92388 0.92081 0.91753 0.95855 0.92804 0.94848 0.90080 0.76529 0.82759 0.83238 0.85278 0.81706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.05 37.16 0.34 -1.22 16 2 C -0.09 -1.26 2.48 -90.58 -0.22 -1.48 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 4 C -0.13 -1.79 5.20 -26.61 -0.14 -1.93 16 5 C 0.14 2.57 6.52 -3.71 -0.02 2.55 16 6 N -0.60 -13.39 2.69 -172.31 -0.46 -13.86 16 7 C -0.26 -7.08 10.04 -15.06 -0.15 -7.23 16 8 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 9 C 0.03 0.82 5.23 -17.43 -0.09 0.73 16 10 N -0.90 -27.93 13.97 55.49 0.78 -27.16 16 11 Si 0.88 22.85 24.34 -169.99 -4.14 18.71 16 12 H -0.28 -7.50 6.62 56.52 0.37 -7.12 16 13 H -0.30 -8.08 7.11 56.52 0.40 -7.67 16 14 H -0.27 -6.83 6.64 56.52 0.38 -6.45 16 15 C 0.11 2.41 3.80 -3.71 -0.01 2.39 16 16 C 0.13 2.26 2.24 -67.80 -0.15 2.11 16 17 H 0.08 1.41 7.58 -51.93 -0.39 1.01 16 18 N -0.69 -11.21 4.21 -54.63 -0.23 -11.44 16 19 C 0.56 9.99 7.75 -12.33 -0.10 9.90 16 20 O -0.54 -11.23 16.08 5.32 0.09 -11.15 16 21 C -0.15 -2.35 5.89 -104.82 -0.62 -2.97 16 22 C -0.02 -0.23 9.72 -38.87 -0.38 -0.61 16 23 C -0.15 -1.70 9.42 -39.50 -0.37 -2.07 16 24 C 0.06 0.75 6.58 -82.51 -0.54 0.21 16 25 C 0.33 3.31 5.72 36.01 0.21 3.52 16 26 F -0.18 -2.38 17.05 2.25 0.04 -2.34 16 27 F -0.19 -2.08 16.45 2.25 0.04 -2.05 16 28 N -0.46 -6.48 9.94 -9.14 -0.09 -6.57 16 29 C 0.14 2.01 10.71 -17.13 -0.18 1.83 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.56 7.54 -51.93 -0.39 0.16 16 33 H 0.06 0.79 6.40 -51.93 -0.33 0.45 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 38 H 0.03 0.71 7.08 -51.93 -0.37 0.34 16 39 H 0.08 2.05 4.50 -51.93 -0.23 1.81 16 40 H 0.40 5.72 4.71 -40.82 -0.19 5.53 16 41 H 0.15 1.99 7.74 -52.49 -0.41 1.58 16 42 H 0.15 1.29 7.59 -52.48 -0.40 0.89 16 43 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.17 2.00 6.42 -52.49 -0.34 1.66 16 LS Contribution 358.12 15.07 5.40 5.40 Total: -1.00 -34.22 358.12 -6.64 -40.86 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.61 Total: 3.87 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -2.44 Total: 5.72 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.01 Total: -59.03 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.08 Total: -4.39 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.14 Total: 18.71 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.22 -6.64 -40.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966570329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.069 kcal (2) G-P(sol) polarization free energy of solvation -34.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds