Wall clock time and date at job start Wed Apr 1 2020 00:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.46237 * 2 1 4 4 C 1.53035 * 109.46225 * 240.03446 * 2 1 3 5 5 C 1.53191 * 109.31490 * 178.61519 * 4 2 1 6 6 N 1.46929 * 108.77630 * 54.63601 * 5 4 2 7 7 C 1.36933 * 120.62918 * 126.41151 * 6 5 4 8 8 H 1.07994 * 120.00720 * 332.61622 * 7 6 5 9 9 C 1.38815 * 119.99901 * 152.61325 * 7 6 5 10 10 N 1.31619 * 120.00348 * 159.35044 * 9 7 6 11 11 Si 1.86798 * 119.99896 * 339.35475 * 9 7 6 12 12 H 1.48510 * 109.47229 * 92.91661 * 11 9 7 13 13 H 1.48495 * 109.47252 * 212.91734 * 11 9 7 14 14 H 1.48499 * 109.47096 * 332.91702 * 11 9 7 15 15 C 1.46926 * 118.73697 * 306.39303 * 6 5 4 16 16 C 1.53048 * 109.45726 * 119.96923 * 2 1 3 17 17 H 1.08995 * 109.49712 * 301.36627 * 16 2 1 18 18 N 1.46498 * 109.50048 * 61.43430 * 16 2 1 19 19 C 1.34774 * 119.99943 * 204.99911 * 18 16 2 20 20 O 1.21554 * 120.00221 * 359.97438 * 19 18 16 21 21 C 1.47838 * 119.99696 * 180.02562 * 19 18 16 22 22 C 1.40031 * 120.55847 * 180.02562 * 21 19 18 23 23 C 1.38352 * 118.28854 * 179.72545 * 22 21 19 24 24 C 1.38351 * 119.30344 * 359.97438 * 23 22 21 25 25 C 1.50702 * 119.45817 * 180.02562 * 24 23 22 26 26 F 1.39900 * 109.47327 * 210.00045 * 25 24 23 27 27 F 1.39899 * 109.47403 * 330.00252 * 25 24 23 28 28 N 1.31924 * 121.08167 * 359.97438 * 24 23 22 29 29 C 1.31691 * 121.87834 * 0.04501 * 28 24 23 30 30 H 1.08999 * 109.47323 * 300.02962 * 1 2 3 31 31 H 1.08995 * 109.47012 * 60.03485 * 1 2 3 32 32 H 1.09003 * 109.47249 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.49903 * 298.56915 * 4 2 1 34 34 H 1.09001 * 109.49850 * 58.66170 * 4 2 1 35 35 H 1.09000 * 109.58898 * 174.42622 * 5 4 2 36 36 H 1.09003 * 109.59009 * 294.70681 * 5 4 2 37 37 H 0.96993 * 120.00000 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.58413 * 293.81875 * 15 6 5 39 39 H 1.09006 * 109.58449 * 173.39303 * 15 6 5 40 40 H 0.97004 * 119.99823 * 24.99734 * 18 16 2 41 41 H 1.07998 * 120.85590 * 359.73493 * 22 21 19 42 42 H 1.08005 * 120.34544 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47334 * 90.00195 * 25 24 23 44 44 H 1.08001 * 119.71409 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7207 -1.2500 5 6 3.5714 -0.6885 -1.2642 6 7 4.0679 -1.2488 0.0001 7 6 4.9764 -2.2734 0.0000 8 1 5.0129 -2.9627 -0.8305 9 6 5.8505 -2.4260 1.0675 10 7 6.4272 -3.5890 1.2849 11 14 6.2082 -0.9808 2.1957 12 1 5.2790 -1.0149 3.3537 13 1 7.6086 -1.0672 2.6820 14 1 6.0212 0.2887 1.4483 15 6 3.5713 -0.6886 1.2643 16 6 2.0398 -0.7209 1.2501 17 1 1.6567 -0.2212 2.1398 18 7 1.5801 -2.1118 1.2343 19 6 1.4515 -2.7922 2.3905 20 8 1.7174 -2.2520 3.4465 21 6 0.9881 -4.1960 2.3744 22 6 0.8498 -4.9138 3.5687 23 6 0.4071 -6.2228 3.4995 24 6 0.1175 -6.7752 2.2646 25 6 -0.3655 -8.2005 2.1852 26 9 0.0406 -8.7636 0.9706 27 9 0.1763 -8.9363 3.2445 28 7 0.2563 -6.0744 1.1555 29 6 0.6745 -4.8258 1.1696 30 1 -0.3634 0.5143 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3634 -1.0277 0.0005 33 1 1.6978 -1.7556 -1.2383 34 1 1.6572 -0.2207 -2.1398 35 1 3.9417 -1.2844 -2.0984 36 1 3.9143 0.3407 -1.3698 37 1 7.0383 -3.6954 2.0306 38 1 3.9143 0.3409 1.3674 39 1 3.9416 -1.2846 2.0985 40 1 1.3682 -2.5429 0.3916 41 1 1.0826 -4.4574 4.5194 42 1 0.2889 -6.8072 4.4001 43 1 -1.4535 -8.2196 2.2486 44 1 0.7758 -4.2847 0.2404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966570329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:57 Heat of formation + Delta-G solvation = -96.392310 kcal Electronic energy + Delta-G solvation = -30445.470900 eV Core-core repulsion = 26033.293715 eV Total energy + Delta-G solvation = -4412.177185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.02840 -48.05200 -41.92114 -40.76898 -39.17008 -36.08895 -34.63852 -33.90592 -33.41143 -33.17913 -31.16625 -29.19398 -28.13621 -25.67374 -25.07515 -24.71086 -23.71941 -22.84206 -21.99383 -20.45838 -19.45740 -18.91179 -18.65998 -18.50825 -18.33307 -17.37336 -17.26435 -16.53316 -16.32491 -16.17472 -15.90826 -15.48270 -15.21767 -15.14037 -14.92081 -14.86436 -14.73865 -14.52637 -14.38306 -14.28949 -14.15319 -13.79329 -13.67131 -13.63263 -13.16767 -12.89953 -12.54747 -12.43042 -12.36630 -12.20684 -11.84845 -11.69200 -11.45822 -11.30180 -11.17280 -11.13405 -10.77874 -10.71336 -10.47892 -10.07111 -8.89642 -8.20006 -5.48437 -0.72371 -0.01615 1.26528 1.31304 1.39082 1.61654 2.05677 2.29731 2.37608 2.59880 3.03306 3.06703 3.16795 3.33986 3.53033 3.60279 3.68574 3.79336 3.85010 3.92996 3.99654 4.02440 4.11942 4.32490 4.40124 4.49602 4.62708 4.64091 4.67721 4.75442 4.83736 4.90190 4.90895 5.02137 5.13380 5.19635 5.21939 5.23144 5.43214 5.45871 5.56286 5.86053 6.10495 6.43395 6.49454 6.90629 7.10645 7.61981 8.02270 8.99408 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011631 B = 0.003933 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.788539 B = 7117.073031 C = 8021.848428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 H 0.092 0.908 4 C -0.121 4.121 5 C 0.137 3.863 6 N -0.611 5.611 7 C -0.230 4.230 8 H 0.060 0.940 9 C -0.030 4.030 10 N -0.954 5.954 11 Si 0.931 3.069 12 H -0.296 1.296 13 H -0.314 1.314 14 H -0.254 1.254 15 C 0.110 3.890 16 C 0.139 3.861 17 H 0.082 0.918 18 N -0.683 5.683 19 C 0.558 3.442 20 O -0.578 6.578 21 C -0.178 4.178 22 C -0.025 4.025 23 C -0.137 4.137 24 C 0.056 3.944 25 C 0.328 3.672 26 F -0.202 7.202 27 F -0.197 7.197 28 N -0.473 5.473 29 C 0.141 3.859 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.036 0.964 37 H 0.256 0.744 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.407 0.593 41 H 0.156 0.844 42 H 0.182 0.818 43 H 0.182 0.818 44 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.985 -0.571 -0.615 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.106 4.106 3 H 0.110 0.890 4 C -0.160 4.160 5 C 0.013 3.987 6 N -0.336 5.336 7 C -0.360 4.360 8 H 0.077 0.923 9 C -0.225 4.225 10 N -0.601 5.601 11 Si 0.762 3.238 12 H -0.224 1.224 13 H -0.243 1.243 14 H -0.178 1.178 15 C -0.017 4.017 16 C 0.033 3.967 17 H 0.100 0.900 18 N -0.333 5.333 19 C 0.344 3.656 20 O -0.460 6.460 21 C -0.183 4.183 22 C -0.052 4.052 23 C -0.156 4.156 24 C -0.082 4.082 25 C 0.274 3.726 26 F -0.184 7.184 27 F -0.178 7.178 28 N -0.181 5.181 29 C -0.017 4.017 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.246 0.754 41 H 0.173 0.827 42 H 0.199 0.801 43 H 0.199 0.801 44 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -20.867 -0.658 -0.667 20.888 hybrid contribution 1.561 0.541 1.348 2.133 sum -19.305 -0.117 0.682 19.318 Atomic orbital electron populations 1.21775 0.92843 1.02203 1.02631 1.21318 0.97116 0.99634 0.92488 0.89000 1.22007 0.95341 1.00580 0.98051 1.21225 0.93802 0.96810 0.86879 1.44408 1.48191 1.39741 1.01237 1.18808 1.09115 1.02687 1.05416 0.92268 1.25766 0.98459 0.98106 1.00187 1.69947 1.34506 1.23780 1.31848 0.86152 0.75062 0.83176 0.79436 1.22394 1.24295 1.17836 1.21742 0.94345 0.96628 0.88961 1.21491 0.93526 0.81473 1.00253 0.90005 1.45683 1.65443 1.13863 1.08318 1.18262 0.77245 0.85866 0.84196 1.90730 1.52666 1.70490 1.32082 1.21174 1.04822 0.95504 0.96765 1.21930 0.91084 0.93511 0.98633 1.22096 0.98616 0.95161 0.99743 1.22364 0.98106 0.97413 0.90352 1.20560 0.99867 0.81230 0.70898 1.93015 1.93050 1.86192 1.46100 1.93018 1.89167 1.78416 1.57236 1.67328 1.12965 1.07286 1.30571 1.23099 0.91370 0.89926 0.97336 0.92751 0.90334 0.92727 0.92296 0.88321 0.92306 0.94587 0.93467 0.94442 0.94330 0.75429 0.82676 0.80067 0.80124 0.80449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.05 71.98 0.65 -1.73 16 2 C -0.09 -2.01 2.48 -10.77 -0.03 -2.03 16 3 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 4 C -0.12 -2.85 5.20 30.67 0.16 -2.69 16 5 C 0.14 4.55 6.52 86.36 0.56 5.11 16 6 N -0.61 -26.88 2.69 -699.08 -1.88 -28.75 16 7 C -0.23 -12.68 10.04 84.03 0.84 -11.83 16 8 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 9 C -0.03 -1.81 5.23 84.86 0.44 -1.37 16 10 N -0.95 -61.37 13.97 21.65 0.30 -61.07 16 11 Si 0.93 49.04 24.34 68.60 1.67 50.71 16 12 H -0.30 -15.95 6.62 99.48 0.66 -15.29 16 13 H -0.31 -16.84 7.11 99.48 0.71 -16.13 16 14 H -0.25 -12.46 6.64 99.48 0.66 -11.80 16 15 C 0.11 4.65 3.80 86.36 0.33 4.97 16 16 C 0.14 4.50 2.24 45.07 0.10 4.60 16 17 H 0.08 2.71 7.58 -2.39 -0.02 2.69 16 18 N -0.68 -21.80 4.21 -445.04 -1.87 -23.67 16 19 C 0.56 20.11 7.75 86.78 0.67 20.78 16 20 O -0.58 -24.89 16.08 -3.88 -0.06 -24.96 16 21 C -0.18 -5.46 5.89 -19.99 -0.12 -5.58 16 22 C -0.03 -0.68 9.72 22.73 0.22 -0.46 16 23 C -0.14 -2.93 9.42 22.32 0.21 -2.72 16 24 C 0.06 1.30 6.58 42.57 0.28 1.58 16 25 C 0.33 5.74 5.72 71.24 0.41 6.15 16 26 F -0.20 -4.87 17.05 44.97 0.77 -4.10 16 27 F -0.20 -3.74 16.45 44.97 0.74 -3.00 16 28 N -0.47 -12.87 9.94 -182.82 -1.82 -14.69 16 29 C 0.14 3.91 10.71 85.02 0.91 4.82 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 0.94 7.54 -2.39 -0.02 0.93 16 33 H 0.06 1.40 6.40 -2.38 -0.02 1.39 16 34 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 2.01 7.93 -2.39 -0.02 1.99 16 36 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 38 H 0.04 1.56 7.08 -2.39 -0.02 1.54 16 39 H 0.04 1.99 4.50 -2.38 -0.01 1.97 16 40 H 0.41 11.23 4.71 -92.71 -0.44 10.79 16 41 H 0.16 4.07 7.74 -2.91 -0.02 4.04 16 42 H 0.18 2.63 7.59 -2.91 -0.02 2.61 16 43 H 0.18 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.18 4.18 6.42 -2.91 -0.02 4.16 16 Total: -1.00 -78.24 358.12 4.01 -74.23 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.52 Total: 15.71 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: 5.65 Total: 19.60 kcal Atomic # 7 Polarization: -122.92 SS G_CDS: -5.26 Total: -128.19 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.06 Total: -24.96 kcal Atomic # 9 Polarization: -8.61 SS G_CDS: 1.51 Total: -7.10 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 1.67 Total: 50.71 kcal Total: -78.24 4.01 -74.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966570329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.165 kcal (2) G-P(sol) polarization free energy of solvation -78.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds