Wall clock time and date at job start Wed Apr 1 2020 00:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.44760 * 2 1 4 4 C 1.53039 * 109.46058 * 240.03412 * 2 1 3 5 5 C 1.53192 * 109.31323 * 178.61128 * 4 2 1 6 6 N 1.46927 * 108.77253 * 54.63509 * 5 4 2 7 7 C 1.36937 * 120.63091 * 126.41344 * 6 5 4 8 8 H 1.08001 * 120.00202 * 207.66482 * 7 6 5 9 9 C 1.38813 * 119.99856 * 27.65997 * 7 6 5 10 10 N 1.31617 * 120.00205 * 17.37351 * 9 7 6 11 11 Si 1.86797 * 120.00048 * 197.36899 * 9 7 6 12 12 H 1.48504 * 109.47562 * 90.00142 * 11 9 7 13 13 H 1.48503 * 109.47188 * 210.00491 * 11 9 7 14 14 H 1.48509 * 109.47176 * 330.00255 * 11 9 7 15 15 C 1.46926 * 118.74078 * 306.39080 * 6 5 4 16 16 C 1.53039 * 109.46159 * 119.96255 * 2 1 3 17 17 H 1.09009 * 109.51989 * 61.41856 * 16 2 1 18 18 N 1.46496 * 109.49941 * 301.34108 * 16 2 1 19 19 C 1.34780 * 120.00211 * 155.16194 * 18 16 2 20 20 O 1.21552 * 119.99956 * 359.97438 * 19 18 16 21 21 C 1.47844 * 120.00257 * 180.02562 * 19 18 16 22 22 C 1.40023 * 120.55977 * 180.02562 * 21 19 18 23 23 C 1.38348 * 118.28792 * 179.97438 * 22 21 19 24 24 C 1.38360 * 119.30303 * 0.02562 * 23 22 21 25 25 C 1.50701 * 119.45822 * 179.97438 * 24 23 22 26 26 F 1.39899 * 109.47136 * 299.99667 * 25 24 23 27 27 F 1.39906 * 109.47202 * 60.00050 * 25 24 23 28 28 N 1.31917 * 121.07909 * 359.97386 * 24 23 22 29 29 C 1.31696 * 121.88308 * 359.97438 * 28 24 23 30 30 H 1.09001 * 109.47097 * 300.03515 * 1 2 3 31 31 H 1.09000 * 109.47059 * 60.03372 * 1 2 3 32 32 H 1.09005 * 109.47022 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.49522 * 58.66068 * 4 2 1 34 34 H 1.08995 * 109.52041 * 298.58083 * 4 2 1 35 35 H 1.08996 * 109.58813 * 294.85211 * 5 4 2 36 36 H 1.08992 * 109.58430 * 174.42108 * 5 4 2 37 37 H 0.96994 * 120.00396 * 180.02562 * 10 9 7 38 38 H 1.08993 * 109.58615 * 293.82092 * 15 6 5 39 39 H 1.09004 * 109.58918 * 173.39616 * 15 6 5 40 40 H 0.97003 * 120.00464 * 335.15550 * 18 16 2 41 41 H 1.07998 * 120.85465 * 359.97438 * 22 21 19 42 42 H 1.08003 * 120.34912 * 180.02562 * 23 22 21 43 43 H 1.08995 * 109.47108 * 179.97438 * 25 24 23 44 44 H 1.08002 * 119.71856 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7207 -1.2501 5 6 3.5714 -0.6885 -1.2643 6 7 4.0679 -1.2487 0.0000 7 6 4.9765 -2.2732 0.0000 8 1 5.0097 -2.9655 0.8283 9 6 5.8547 -2.4221 -1.0646 10 7 6.0605 -1.4203 -1.8930 11 14 6.7445 -4.0443 -1.3215 12 1 5.9275 -4.9242 -2.1953 13 1 8.0592 -3.7913 -1.9642 14 1 6.9545 -4.7070 -0.0092 15 6 3.5714 -0.6885 1.2643 16 6 2.0399 -0.7207 1.2501 17 1 1.6978 -1.7556 1.2389 18 7 1.5256 -0.0486 2.4459 19 6 1.4002 -0.7313 3.6013 20 8 1.7135 -1.9047 3.6509 21 6 0.8807 -0.0533 4.8080 22 6 0.7461 -0.7511 6.0144 23 6 0.2556 -0.0704 7.1144 24 6 -0.0837 1.2651 6.9884 25 6 -0.6189 2.0098 8.1842 26 9 -1.7950 1.3957 8.6279 27 9 0.3327 1.9910 9.2096 28 7 0.0538 1.8970 5.8386 29 6 0.5171 1.2930 4.7639 30 1 -0.3633 0.5144 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6572 -0.2207 -2.1398 34 1 1.6978 -1.7556 -1.2388 35 1 3.9143 0.3410 -1.3673 36 1 3.9416 -1.2844 -2.0984 37 1 6.6738 -1.5244 -2.6372 38 1 3.9143 0.3410 1.3674 39 1 3.9417 -1.2844 2.0985 40 1 1.2753 0.8877 2.4063 41 1 1.0183 -1.7939 6.0844 42 1 0.1386 -0.5761 8.0615 43 1 -0.8307 3.0418 7.9045 44 1 0.6149 1.8441 3.8403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966570330.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:02 Heat of formation + Delta-G solvation = -81.705195 kcal Electronic energy + Delta-G solvation = -29181.074517 eV Core-core repulsion = 24769.534213 eV Total energy + Delta-G solvation = -4411.540304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.48887 -47.47412 -41.02540 -39.50664 -37.69859 -34.66077 -33.40764 -33.14070 -32.39519 -31.13686 -29.22404 -27.74628 -26.99959 -24.29856 -24.20888 -23.54350 -22.18532 -21.13626 -20.56326 -19.61631 -18.44646 -18.09814 -17.72766 -17.58882 -16.90995 -16.54511 -15.50466 -15.39108 -15.17092 -14.80645 -14.59613 -14.46557 -14.07285 -13.83716 -13.78099 -13.75258 -13.62238 -13.44202 -13.40328 -13.20442 -12.89981 -12.51519 -12.09146 -11.78664 -11.69305 -11.56749 -11.09653 -10.84356 -10.73237 -10.48615 -10.41631 -10.31648 -10.19260 -9.97577 -9.90756 -9.78862 -9.70557 -9.58994 -8.93638 -8.44189 -6.71677 -5.81110 -3.23496 0.01915 0.69262 2.55889 2.79589 3.06000 3.38531 3.40009 3.45398 3.47633 3.67366 3.88128 4.19668 4.31441 4.46419 4.51669 4.52723 4.60723 4.77727 5.00217 5.06732 5.21696 5.32850 5.41120 5.44209 5.54308 5.60096 5.82461 5.88200 5.92735 5.98391 6.09614 6.15428 6.22944 6.45778 6.55773 6.58684 6.66292 6.76746 6.90851 7.15467 7.31500 7.51410 7.61368 7.80768 8.16934 8.42878 9.19216 9.81237 10.36402 11.27580 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.019729 B = 0.002380 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.866480 B =11759.853299 C =12562.204749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.068 0.932 4 C -0.133 4.133 5 C 0.166 3.834 6 N -0.587 5.587 7 C -0.251 4.251 8 H 0.067 0.933 9 C 0.003 3.997 10 N -0.903 5.903 11 Si 0.903 3.097 12 H -0.287 1.287 13 H -0.291 1.291 14 H -0.278 1.278 15 C 0.141 3.859 16 C 0.132 3.868 17 H 0.089 0.911 18 N -0.710 5.710 19 C 0.556 3.444 20 O -0.523 6.523 21 C -0.155 4.155 22 C -0.017 4.017 23 C -0.137 4.137 24 C 0.062 3.938 25 C 0.325 3.675 26 F -0.192 7.192 27 F -0.191 7.191 28 N -0.460 5.460 29 C 0.134 3.866 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.019 0.981 36 H 0.090 0.910 37 H 0.254 0.746 38 H 0.018 0.982 39 H 0.058 0.942 40 H 0.394 0.606 41 H 0.158 0.842 42 H 0.148 0.852 43 H 0.134 0.866 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.816 8.781 14.555 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.087 0.913 4 C -0.173 4.173 5 C 0.041 3.959 6 N -0.309 5.309 7 C -0.381 4.381 8 H 0.085 0.915 9 C -0.196 4.196 10 N -0.548 5.548 11 Si 0.733 3.267 12 H -0.214 1.214 13 H -0.218 1.218 14 H -0.204 1.204 15 C 0.014 3.986 16 C 0.027 3.973 17 H 0.107 0.893 18 N -0.361 5.361 19 C 0.340 3.660 20 O -0.399 6.399 21 C -0.161 4.161 22 C -0.044 4.044 23 C -0.157 4.157 24 C -0.076 4.076 25 C 0.270 3.730 26 F -0.173 7.173 27 F -0.173 7.173 28 N -0.169 5.169 29 C -0.025 4.025 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.036 0.964 39 H 0.077 0.923 40 H 0.229 0.771 41 H 0.175 0.825 42 H 0.166 0.834 43 H 0.151 0.849 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -15.677 8.784 14.417 23.038 hybrid contribution 0.608 -1.205 -0.073 1.351 sum -15.069 7.579 14.344 22.142 Atomic orbital electron populations 1.21867 0.95936 1.01652 1.00780 1.21317 0.94589 0.99738 0.95401 0.91342 1.22249 1.00674 0.99588 0.94799 1.20863 0.87304 0.97375 0.90386 1.43996 1.48074 1.39796 0.99060 1.19229 1.09760 1.02848 1.06257 0.91513 1.25021 0.97191 0.97520 0.99835 1.70033 1.37839 1.28972 1.17943 0.86269 0.78719 0.83628 0.78069 1.21385 1.21771 1.20359 1.21186 0.89852 0.96764 0.90845 1.21880 0.96926 0.97025 0.81486 0.89253 1.46066 1.65345 1.14228 1.10421 1.17900 0.78771 0.86583 0.82731 1.90840 1.49237 1.15529 1.84293 1.21337 1.02703 0.95900 0.96111 1.21822 0.91113 1.01312 0.90131 1.21923 0.98678 0.94512 1.00615 1.21658 0.99252 0.92634 0.94079 1.20107 0.74157 0.98011 0.80733 1.93040 1.48157 1.85815 1.90320 1.93047 1.65135 1.97650 1.61438 1.67212 1.12519 1.38654 0.98478 1.22963 0.92139 0.90939 0.96425 0.93486 0.92813 0.92857 0.92608 0.92361 0.96259 0.89172 0.93622 0.96397 0.92310 0.77141 0.82476 0.83377 0.84886 0.81413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.02 37.16 0.34 -1.40 16 2 C -0.09 -1.36 2.27 -90.58 -0.21 -1.56 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.13 -2.36 5.36 -26.61 -0.14 -2.50 16 5 C 0.17 3.80 5.31 -3.71 -0.02 3.78 16 6 N -0.59 -14.47 2.99 -172.33 -0.52 -14.99 16 7 C -0.25 -6.94 9.59 -15.06 -0.14 -7.08 16 8 H 0.07 1.86 7.89 -52.49 -0.41 1.45 16 9 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 10 N -0.90 -25.90 11.19 55.49 0.62 -25.28 16 11 Si 0.90 21.83 29.59 -169.99 -5.03 16.80 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 15 C 0.14 2.95 6.09 -3.71 -0.02 2.93 16 16 C 0.13 2.19 2.06 -67.82 -0.14 2.05 16 17 H 0.09 1.73 7.58 -51.92 -0.39 1.34 16 18 N -0.71 -9.17 4.33 -54.63 -0.24 -9.41 16 19 C 0.56 7.82 7.75 -12.33 -0.10 7.72 16 20 O -0.52 -9.54 16.09 5.32 0.09 -9.45 16 21 C -0.16 -1.71 5.89 -104.82 -0.62 -2.33 16 22 C -0.02 -0.18 9.72 -38.87 -0.38 -0.55 16 23 C -0.14 -1.21 9.60 -39.50 -0.38 -1.59 16 24 C 0.06 0.57 6.28 -82.51 -0.52 0.05 16 25 C 0.32 2.42 5.54 36.01 0.20 2.62 16 26 F -0.19 -1.63 17.25 2.25 0.04 -1.59 16 27 F -0.19 -1.66 17.25 2.25 0.04 -1.62 16 28 N -0.46 -4.44 10.23 -9.14 -0.09 -4.54 16 29 C 0.13 1.24 10.71 -17.13 -0.18 1.06 16 30 H 0.05 0.48 7.36 -51.93 -0.38 0.09 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 37 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 1.32 7.93 -51.93 -0.41 0.91 16 40 H 0.39 3.77 6.37 -40.82 -0.26 3.51 16 41 H 0.16 1.53 7.74 -52.49 -0.41 1.13 16 42 H 0.15 1.01 8.06 -52.48 -0.42 0.58 16 43 H 0.13 0.67 8.10 -51.93 -0.42 0.25 16 44 H 0.17 1.10 6.42 -52.49 -0.34 0.76 16 LS Contribution 369.10 15.07 5.56 5.56 Total: -1.00 -32.17 369.10 -7.78 -39.95 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.86 Total: 1.38 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -2.40 Total: 3.18 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.23 Total: -54.21 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.08 Total: -3.21 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.17 -7.78 -39.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966570330.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.752 kcal (2) G-P(sol) polarization free energy of solvation -32.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds