Wall clock time and date at job start Wed Apr 1 2020 00:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.44760 * 2 1 4 4 C 1.53039 * 109.46058 * 240.03412 * 2 1 3 5 5 C 1.53192 * 109.31323 * 178.61128 * 4 2 1 6 6 N 1.46927 * 108.77253 * 54.63509 * 5 4 2 7 7 C 1.36937 * 120.63091 * 126.41344 * 6 5 4 8 8 H 1.08001 * 120.00202 * 207.66482 * 7 6 5 9 9 C 1.38813 * 119.99856 * 27.65997 * 7 6 5 10 10 N 1.31617 * 120.00205 * 17.37351 * 9 7 6 11 11 Si 1.86797 * 120.00048 * 197.36899 * 9 7 6 12 12 H 1.48504 * 109.47562 * 90.00142 * 11 9 7 13 13 H 1.48503 * 109.47188 * 210.00491 * 11 9 7 14 14 H 1.48509 * 109.47176 * 330.00255 * 11 9 7 15 15 C 1.46926 * 118.74078 * 306.39080 * 6 5 4 16 16 C 1.53039 * 109.46159 * 119.96255 * 2 1 3 17 17 H 1.09009 * 109.51989 * 61.41856 * 16 2 1 18 18 N 1.46496 * 109.49941 * 301.34108 * 16 2 1 19 19 C 1.34780 * 120.00211 * 155.16194 * 18 16 2 20 20 O 1.21552 * 119.99956 * 359.97438 * 19 18 16 21 21 C 1.47844 * 120.00257 * 180.02562 * 19 18 16 22 22 C 1.40023 * 120.55977 * 180.02562 * 21 19 18 23 23 C 1.38348 * 118.28792 * 179.97438 * 22 21 19 24 24 C 1.38360 * 119.30303 * 0.02562 * 23 22 21 25 25 C 1.50701 * 119.45822 * 179.97438 * 24 23 22 26 26 F 1.39899 * 109.47136 * 299.99667 * 25 24 23 27 27 F 1.39906 * 109.47202 * 60.00050 * 25 24 23 28 28 N 1.31917 * 121.07909 * 359.97386 * 24 23 22 29 29 C 1.31696 * 121.88308 * 359.97438 * 28 24 23 30 30 H 1.09001 * 109.47097 * 300.03515 * 1 2 3 31 31 H 1.09000 * 109.47059 * 60.03372 * 1 2 3 32 32 H 1.09005 * 109.47022 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.49522 * 58.66068 * 4 2 1 34 34 H 1.08995 * 109.52041 * 298.58083 * 4 2 1 35 35 H 1.08996 * 109.58813 * 294.85211 * 5 4 2 36 36 H 1.08992 * 109.58430 * 174.42108 * 5 4 2 37 37 H 0.96994 * 120.00396 * 180.02562 * 10 9 7 38 38 H 1.08993 * 109.58615 * 293.82092 * 15 6 5 39 39 H 1.09004 * 109.58918 * 173.39616 * 15 6 5 40 40 H 0.97003 * 120.00464 * 335.15550 * 18 16 2 41 41 H 1.07998 * 120.85465 * 359.97438 * 22 21 19 42 42 H 1.08003 * 120.34912 * 180.02562 * 23 22 21 43 43 H 1.08995 * 109.47108 * 179.97438 * 25 24 23 44 44 H 1.08002 * 119.71856 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7207 -1.2501 5 6 3.5714 -0.6885 -1.2643 6 7 4.0679 -1.2487 0.0000 7 6 4.9765 -2.2732 0.0000 8 1 5.0097 -2.9655 0.8283 9 6 5.8547 -2.4221 -1.0646 10 7 6.0605 -1.4203 -1.8930 11 14 6.7445 -4.0443 -1.3215 12 1 5.9275 -4.9242 -2.1953 13 1 8.0592 -3.7913 -1.9642 14 1 6.9545 -4.7070 -0.0092 15 6 3.5714 -0.6885 1.2643 16 6 2.0399 -0.7207 1.2501 17 1 1.6978 -1.7556 1.2389 18 7 1.5256 -0.0486 2.4459 19 6 1.4002 -0.7313 3.6013 20 8 1.7135 -1.9047 3.6509 21 6 0.8807 -0.0533 4.8080 22 6 0.7461 -0.7511 6.0144 23 6 0.2556 -0.0704 7.1144 24 6 -0.0837 1.2651 6.9884 25 6 -0.6189 2.0098 8.1842 26 9 -1.7950 1.3957 8.6279 27 9 0.3327 1.9910 9.2096 28 7 0.0538 1.8970 5.8386 29 6 0.5171 1.2930 4.7639 30 1 -0.3633 0.5144 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6572 -0.2207 -2.1398 34 1 1.6978 -1.7556 -1.2388 35 1 3.9143 0.3410 -1.3673 36 1 3.9416 -1.2844 -2.0984 37 1 6.6738 -1.5244 -2.6372 38 1 3.9143 0.3410 1.3674 39 1 3.9417 -1.2844 2.0985 40 1 1.2753 0.8877 2.4063 41 1 1.0183 -1.7939 6.0844 42 1 0.1386 -0.5761 8.0615 43 1 -0.8307 3.0418 7.9045 44 1 0.6149 1.8441 3.8403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966570330.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:01 Heat of formation + Delta-G solvation = -101.950943 kcal Electronic energy + Delta-G solvation = -29181.952439 eV Core-core repulsion = 24769.534213 eV Total energy + Delta-G solvation = -4412.418226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.10492 -48.09706 -41.91821 -40.64109 -39.13039 -36.27047 -34.72590 -33.98399 -33.25528 -33.02573 -30.65005 -29.06962 -28.08565 -25.91453 -25.04729 -24.61958 -23.41717 -22.70099 -21.73004 -21.07241 -19.29651 -18.84066 -18.65527 -18.49724 -18.34297 -17.51431 -16.94913 -16.48863 -16.30178 -16.14881 -15.71525 -15.46020 -15.37979 -15.15570 -15.01274 -14.67044 -14.58505 -14.46468 -14.45155 -14.31981 -14.13659 -13.57247 -13.56948 -13.19969 -13.14101 -12.77150 -12.66053 -12.38121 -12.30577 -12.03363 -11.96799 -11.70510 -11.56541 -11.28359 -11.22566 -11.19532 -10.75932 -10.62178 -10.55584 -10.16348 -8.71094 -7.91774 -5.36961 -0.78192 -0.04074 1.43602 1.44932 1.53913 1.59123 1.92446 2.16957 2.48801 2.52482 3.12296 3.22312 3.23056 3.45772 3.57950 3.63932 3.72709 3.77789 3.84870 3.93232 4.01211 4.11001 4.11383 4.39079 4.44270 4.50720 4.66441 4.69526 4.76702 4.84183 4.92839 4.95781 5.04224 5.09314 5.16679 5.19379 5.22978 5.41934 5.46674 5.54055 5.62627 5.77433 6.35297 6.39993 6.45910 7.09035 7.12691 7.81532 8.30756 9.13775 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.019729 B = 0.002380 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.866480 B =11759.853299 C =12562.204749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 H 0.084 0.916 4 C -0.123 4.123 5 C 0.171 3.829 6 N -0.606 5.606 7 C -0.267 4.267 8 H 0.053 0.947 9 C -0.043 4.043 10 N -0.928 5.928 11 Si 0.964 3.036 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.275 1.275 15 C 0.143 3.857 16 C 0.150 3.850 17 H 0.060 0.940 18 N -0.695 5.695 19 C 0.559 3.441 20 O -0.572 6.572 21 C -0.170 4.170 22 C -0.023 4.023 23 C -0.138 4.138 24 C 0.061 3.939 25 C 0.327 3.673 26 F -0.197 7.197 27 F -0.199 7.199 28 N -0.465 5.465 29 C 0.144 3.856 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.006 0.994 36 H 0.054 0.946 37 H 0.252 0.748 38 H 0.023 0.977 39 H 0.030 0.970 40 H 0.415 0.585 41 H 0.153 0.847 42 H 0.167 0.833 43 H 0.163 0.837 44 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.869 10.562 15.318 25.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 H 0.103 0.897 4 C -0.162 4.162 5 C 0.046 3.954 6 N -0.330 5.330 7 C -0.397 4.397 8 H 0.071 0.929 9 C -0.239 4.239 10 N -0.574 5.574 11 Si 0.792 3.208 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.200 1.200 15 C 0.016 3.984 16 C 0.044 3.956 17 H 0.079 0.921 18 N -0.346 5.346 19 C 0.345 3.655 20 O -0.452 6.452 21 C -0.175 4.175 22 C -0.049 4.049 23 C -0.158 4.158 24 C -0.077 4.077 25 C 0.273 3.727 26 F -0.179 7.179 27 F -0.180 7.180 28 N -0.173 5.173 29 C -0.014 4.014 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.024 0.976 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.041 0.959 39 H 0.049 0.951 40 H 0.253 0.747 41 H 0.171 0.829 42 H 0.184 0.816 43 H 0.180 0.820 44 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -17.770 10.615 15.204 25.683 hybrid contribution 1.264 -1.733 -0.214 2.156 sum -16.506 8.882 14.990 24.001 Atomic orbital electron populations 1.21794 0.92811 1.01768 1.03012 1.21248 0.96998 0.99519 0.92440 0.89738 1.22079 0.96574 0.99860 0.97734 1.20731 0.90750 0.95461 0.88485 1.44213 1.48189 1.39732 1.00867 1.19390 1.10493 1.03694 1.06117 0.92886 1.25695 0.98152 1.00383 0.99702 1.70158 1.38492 1.30464 1.18271 0.85329 0.77541 0.80061 0.77894 1.20897 1.21564 1.20037 1.21234 0.92832 0.95941 0.88412 1.21326 0.93732 0.96520 0.84029 0.92133 1.45768 1.64687 1.15090 1.09104 1.18335 0.77628 0.86000 0.83514 1.90821 1.51422 1.17865 1.85090 1.21078 1.04676 0.96830 0.94896 1.21911 0.91102 1.01406 0.90484 1.22117 0.98173 0.94639 1.00882 1.22041 0.98296 0.92824 0.94588 1.20332 0.73585 0.99018 0.79772 1.93032 1.48430 1.86088 1.90322 1.93036 1.65509 1.97702 1.61740 1.67315 1.12827 1.38537 0.98633 1.23340 0.90661 0.90048 0.97401 0.91030 0.90847 0.93839 0.89843 0.93576 0.97589 0.92764 0.93858 0.95866 0.95085 0.74654 0.82881 0.81577 0.82012 0.78596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.02 71.98 0.65 -2.12 16 2 C -0.08 -2.29 2.27 -10.77 -0.02 -2.31 16 3 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 4 C -0.12 -4.25 5.36 30.67 0.16 -4.08 16 5 C 0.17 7.98 5.31 86.36 0.46 8.44 16 6 N -0.61 -30.96 2.99 -699.12 -2.09 -33.05 16 7 C -0.27 -15.31 9.59 84.03 0.81 -14.50 16 8 H 0.05 3.11 7.89 -2.91 -0.02 3.09 16 9 C -0.04 -2.47 4.91 84.86 0.42 -2.05 16 10 N -0.93 -54.73 11.19 21.65 0.24 -54.48 16 11 Si 0.96 46.00 29.59 68.60 2.03 48.03 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 14 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 15 C 0.14 6.11 6.09 86.36 0.53 6.64 16 16 C 0.15 4.95 2.06 45.07 0.09 5.04 16 17 H 0.06 2.40 7.58 -2.38 -0.02 2.38 16 18 N -0.69 -16.91 4.33 -445.04 -1.92 -18.84 16 19 C 0.56 15.48 7.75 86.79 0.67 16.15 16 20 O -0.57 -21.58 16.09 -3.88 -0.06 -21.64 16 21 C -0.17 -3.51 5.89 -19.99 -0.12 -3.63 16 22 C -0.02 -0.44 9.72 22.73 0.22 -0.22 16 23 C -0.14 -2.21 9.60 22.33 0.21 -1.99 16 24 C 0.06 0.96 6.28 42.58 0.27 1.23 16 25 C 0.33 4.01 5.54 71.24 0.39 4.40 16 26 F -0.20 -2.88 17.25 44.97 0.78 -2.11 16 27 F -0.20 -3.01 17.25 44.97 0.78 -2.24 16 28 N -0.46 -7.59 10.23 -182.82 -1.87 -9.46 16 29 C 0.14 2.26 10.71 85.02 0.91 3.17 16 30 H 0.07 1.12 7.36 -2.39 -0.02 1.10 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.05 2.91 6.04 -2.39 -0.01 2.89 16 37 H 0.25 14.33 8.31 -92.71 -0.77 13.55 16 38 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.03 1.46 7.93 -2.38 -0.02 1.44 16 40 H 0.41 6.58 6.37 -92.71 -0.59 5.99 16 41 H 0.15 3.05 7.74 -2.91 -0.02 3.02 16 42 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 43 H 0.16 1.08 8.10 -2.39 -0.02 1.06 16 44 H 0.20 1.75 6.42 -2.91 -0.02 1.74 16 Total: -1.00 -73.34 369.10 3.97 -69.37 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.45 Total: 10.26 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 5.65 Total: 14.16 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -5.65 Total: -115.83 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.06 Total: -21.64 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 1.55 Total: -4.34 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -73.34 3.97 -69.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966570330.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.582 kcal (2) G-P(sol) polarization free energy of solvation -73.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds