Wall clock time and date at job start Wed Apr 1 2020 00:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.44846 * 2 1 4 4 C 1.53033 * 109.46292 * 119.96924 * 2 1 3 5 5 C 1.53191 * 109.31759 * 181.38495 * 4 2 1 6 6 N 1.46927 * 108.77525 * 305.36753 * 5 4 2 7 7 C 1.36931 * 120.62663 * 233.62644 * 6 5 4 8 8 H 1.08004 * 119.99956 * 148.95867 * 7 6 5 9 9 C 1.38815 * 120.00535 * 328.95778 * 7 6 5 10 10 N 1.31613 * 120.00331 * 160.75516 * 9 7 6 11 11 Si 1.86806 * 119.99679 * 340.75423 * 9 7 6 12 12 H 1.48493 * 109.47105 * 88.43044 * 11 9 7 13 13 H 1.48496 * 109.47061 * 208.43320 * 11 9 7 14 14 H 1.48499 * 109.46869 * 328.42968 * 11 9 7 15 15 C 1.46921 * 118.73817 * 53.60274 * 6 5 4 16 16 C 1.53042 * 109.46160 * 240.03836 * 2 1 3 17 17 H 1.09004 * 109.49906 * 58.66056 * 16 2 1 18 18 N 1.46501 * 109.49489 * 298.59700 * 16 2 1 19 19 C 1.34777 * 119.99534 * 154.99916 * 18 16 2 20 20 O 1.21550 * 120.00623 * 0.02562 * 19 18 16 21 21 C 1.47841 * 119.99603 * 179.97438 * 19 18 16 22 22 C 1.40026 * 120.56104 * 327.23300 * 21 19 18 23 23 C 1.38359 * 118.28640 * 179.73099 * 22 21 19 24 24 C 1.38348 * 119.30444 * 0.56656 * 23 22 21 25 25 N 1.31926 * 121.08128 * 359.69704 * 24 23 22 26 26 C 1.31699 * 121.87846 * 0.02562 * 25 24 23 27 27 C 1.50697 * 119.71695 * 180.02562 * 26 25 24 28 28 F 1.39901 * 109.47343 * 13.71203 * 27 26 25 29 29 F 1.39895 * 109.47566 * 133.71958 * 27 26 25 30 30 H 1.09006 * 109.46891 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47076 * 299.96411 * 1 2 3 32 32 H 1.09004 * 109.46905 * 59.96650 * 1 2 3 33 33 H 1.09000 * 109.49700 * 301.34130 * 4 2 1 34 34 H 1.09004 * 109.50150 * 61.43369 * 4 2 1 35 35 H 1.08995 * 109.59159 * 185.57539 * 5 4 2 36 36 H 1.08998 * 109.58404 * 65.15247 * 5 4 2 37 37 H 0.96996 * 120.00370 * 180.02562 * 10 9 7 38 38 H 1.09003 * 109.58691 * 186.60084 * 15 6 5 39 39 H 1.09003 * 109.58686 * 66.18281 * 15 6 5 40 40 H 0.96996 * 120.00368 * 334.99830 * 18 16 2 41 41 H 1.07999 * 120.85376 * 0.02562 * 22 21 19 42 42 H 1.08002 * 120.34755 * 180.25823 * 23 22 21 43 43 H 1.08005 * 119.46194 * 179.71576 * 24 23 22 44 44 H 1.09007 * 109.47037 * 253.71410 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5714 -0.6886 1.2642 6 7 4.0679 -1.2488 -0.0001 7 6 4.9758 -2.2739 -0.0001 8 1 4.9729 -2.9978 -0.8016 9 6 5.8999 -2.3827 1.0300 10 7 6.5072 -3.5292 1.2509 11 14 6.2815 -0.9017 2.1027 12 1 5.3342 -0.8610 3.2455 13 1 7.6713 -1.0066 2.6151 14 1 6.1424 0.3399 1.2999 15 6 3.5714 -0.6885 -1.2643 16 6 2.0399 -0.7207 -1.2501 17 1 1.6572 -0.2206 -2.1399 18 7 1.5795 -2.1114 -1.2347 19 6 1.4510 -2.7914 -2.3912 20 8 1.7174 -2.2511 -3.4470 21 6 0.9870 -4.1950 -2.3757 22 6 1.3093 -5.0396 -1.3064 23 6 0.8458 -6.3429 -1.3375 24 6 0.0959 -6.7693 -2.4191 25 7 -0.1878 -5.9525 -3.4155 26 6 0.2258 -4.7022 -3.4293 27 6 -0.1272 -3.8114 -4.5924 28 9 -1.1327 -4.4159 -5.3545 29 9 -0.5824 -2.5781 -4.1139 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3633 0.5144 -0.8897 33 1 1.6572 -0.2208 2.1397 34 1 1.6979 -1.7557 1.2382 35 1 3.9418 -1.2845 2.0983 36 1 3.9143 0.3409 1.3673 37 1 7.1527 -3.6054 1.9709 38 1 3.9417 -1.2843 -2.0985 39 1 3.9143 0.3411 -1.3674 40 1 1.3673 -2.5427 -0.3923 41 1 1.9004 -4.6816 -0.4765 42 1 1.0711 -7.0217 -0.5282 43 1 -0.2633 -7.7874 -2.4482 44 1 0.7557 -3.6569 -5.2127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967293145.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:05 Heat of formation + Delta-G solvation = -73.182787 kcal Electronic energy + Delta-G solvation = -31139.052624 eV Core-core repulsion = 26727.881879 eV Total energy + Delta-G solvation = -4411.170745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.87953 -46.88436 -40.77554 -39.50819 -37.76760 -34.49906 -33.40719 -32.55116 -32.26465 -31.49356 -29.70957 -27.72404 -26.83394 -24.84297 -23.86727 -22.93334 -22.36278 -21.40405 -20.93966 -18.99304 -18.17436 -17.64405 -17.41504 -17.27678 -16.78464 -16.12540 -15.60047 -15.36931 -15.25659 -14.79339 -14.60526 -14.05128 -13.93304 -13.79595 -13.71046 -13.55175 -13.38166 -13.35458 -13.03352 -12.99627 -12.60921 -12.44612 -12.35934 -12.00062 -11.66406 -11.57331 -11.40143 -11.28359 -10.74871 -10.68400 -10.33802 -10.18374 -10.04864 -9.99111 -9.79392 -9.60670 -9.53690 -9.40606 -8.92128 -8.53601 -6.97780 -6.03706 -3.42681 0.43557 0.89523 2.86875 3.24361 3.27357 3.33978 3.42831 3.45715 3.53481 4.07368 4.28231 4.45528 4.60087 4.64222 4.78270 4.89205 4.92938 4.94559 5.06820 5.13250 5.14729 5.16031 5.24082 5.34375 5.67326 5.69316 5.74899 5.80229 5.86070 5.92273 6.02655 6.04027 6.16005 6.23415 6.27873 6.31969 6.47370 6.57167 6.62200 6.69457 6.86512 7.50769 7.71264 7.91720 8.25663 8.36689 8.87127 9.64028 10.02834 11.12239 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014046 B = 0.004143 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.013618 B = 6757.461855 C = 7761.952938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.081 0.919 4 C -0.130 4.130 5 C 0.123 3.877 6 N -0.602 5.602 7 C -0.258 4.258 8 H 0.081 0.919 9 C 0.027 3.973 10 N -0.908 5.908 11 Si 0.884 3.116 12 H -0.287 1.287 13 H -0.304 1.304 14 H -0.272 1.272 15 C 0.136 3.864 16 C 0.135 3.865 17 H 0.086 0.914 18 N -0.688 5.688 19 C 0.564 3.436 20 O -0.536 6.536 21 C -0.146 4.146 22 C -0.038 4.038 23 C -0.158 4.158 24 C 0.115 3.885 25 N -0.461 5.461 26 C 0.097 3.903 27 C 0.331 3.669 28 F -0.193 7.193 29 F -0.185 7.185 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.024 0.976 37 H 0.263 0.737 38 H 0.069 0.931 39 H 0.033 0.967 40 H 0.400 0.600 41 H 0.155 0.845 42 H 0.149 0.851 43 H 0.167 0.833 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.624 -1.136 -3.379 15.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.099 0.901 4 C -0.169 4.169 5 C -0.002 4.002 6 N -0.326 5.326 7 C -0.386 4.386 8 H 0.099 0.901 9 C -0.172 4.172 10 N -0.551 5.551 11 Si 0.715 3.285 12 H -0.215 1.215 13 H -0.232 1.232 14 H -0.198 1.198 15 C 0.009 3.991 16 C 0.029 3.971 17 H 0.104 0.896 18 N -0.337 5.337 19 C 0.349 3.651 20 O -0.415 6.415 21 C -0.152 4.152 22 C -0.064 4.064 23 C -0.178 4.178 24 C -0.042 4.042 25 N -0.169 5.169 26 C -0.044 4.044 27 C 0.277 3.723 28 F -0.174 7.174 29 F -0.166 7.166 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.236 0.764 41 H 0.173 0.827 42 H 0.167 0.833 43 H 0.184 0.816 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.812 -1.116 -4.745 15.594 hybrid contribution 0.777 0.744 1.998 2.269 sum -14.036 -0.372 -2.747 14.307 Atomic orbital electron populations 1.21838 0.95405 1.01627 1.01318 1.21329 0.95162 0.99896 0.95002 0.90075 1.22086 0.98639 0.99859 0.96340 1.21386 0.91454 0.97052 0.90342 1.44308 1.48916 1.40288 0.99062 1.18829 1.07934 1.01518 1.10348 0.90103 1.25361 0.96738 0.96589 0.98511 1.69806 1.29957 1.23279 1.32025 0.86947 0.76356 0.85037 0.80195 1.21508 1.23208 1.19764 1.21365 0.90409 0.97324 0.90039 1.21602 0.96912 0.80571 0.98023 0.89563 1.45738 1.65920 1.13976 1.08114 1.17786 0.77930 0.84758 0.84661 1.90754 1.51078 1.69113 1.30517 1.20822 1.01552 0.96462 0.96332 1.22020 0.94544 0.93211 0.96634 1.22300 0.98415 0.96677 1.00362 1.22980 0.93508 0.99212 0.88530 1.67396 1.19878 1.02696 1.26926 1.21761 0.95559 0.92476 0.94570 1.20076 0.88535 0.76273 0.87463 1.93002 1.64338 1.83615 1.76422 1.93034 1.90624 1.43676 1.89250 0.92952 0.92848 0.92814 0.92289 0.92252 0.90765 0.95769 0.92746 0.91209 0.94934 0.76437 0.82689 0.83337 0.81596 0.84679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.05 37.16 0.34 -1.32 16 2 C -0.09 -1.28 2.48 -90.58 -0.22 -1.51 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.13 -1.94 5.20 -26.62 -0.14 -2.08 16 5 C 0.12 2.40 4.21 -3.71 -0.02 2.39 16 6 N -0.60 -13.00 2.63 -172.33 -0.45 -13.46 16 7 C -0.26 -6.71 10.00 -15.06 -0.15 -6.87 16 8 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 9 C 0.03 0.75 5.22 -17.43 -0.09 0.66 16 10 N -0.91 -26.48 13.97 55.49 0.78 -25.70 16 11 Si 0.88 21.42 24.40 -169.99 -4.15 17.28 16 12 H -0.29 -6.63 6.50 56.52 0.37 -6.26 16 13 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 14 H -0.27 -6.58 6.93 56.52 0.39 -6.19 16 15 C 0.14 2.57 6.12 -3.72 -0.02 2.55 16 16 C 0.13 2.09 2.24 -67.81 -0.15 1.94 16 17 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 18 N -0.69 -10.43 4.18 -54.63 -0.23 -10.66 16 19 C 0.56 9.14 6.50 -12.33 -0.08 9.06 16 20 O -0.54 -9.81 13.61 5.32 0.07 -9.74 16 21 C -0.15 -2.11 5.79 -104.82 -0.61 -2.72 16 22 C -0.04 -0.47 9.46 -38.87 -0.37 -0.84 16 23 C -0.16 -1.59 10.10 -39.50 -0.40 -1.99 16 24 C 0.11 1.19 11.17 -17.47 -0.20 1.00 16 25 N -0.46 -6.20 9.78 -9.14 -0.09 -6.29 16 26 C 0.10 1.39 6.60 -82.17 -0.54 0.85 16 27 C 0.33 4.71 4.60 36.00 0.17 4.87 16 28 F -0.19 -2.79 16.91 2.25 0.04 -2.76 16 29 F -0.18 -2.90 14.73 2.25 0.03 -2.87 16 30 H 0.05 0.60 7.54 -51.93 -0.39 0.21 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.87 6.40 -51.93 -0.33 0.54 16 35 H 0.07 1.61 4.78 -51.93 -0.25 1.36 16 36 H 0.02 0.48 7.19 -51.93 -0.37 0.10 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.07 1.46 7.93 -51.93 -0.41 1.05 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.40 5.62 5.73 -40.82 -0.23 5.39 16 41 H 0.16 1.94 7.56 -52.49 -0.40 1.54 16 42 H 0.15 1.07 8.06 -52.49 -0.42 0.64 16 43 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16 44 H 0.14 1.75 7.73 -51.92 -0.40 1.34 16 LS Contribution 355.14 15.07 5.35 5.35 Total: -1.00 -31.41 355.14 -6.88 -38.29 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.75 Total: 4.56 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -2.48 Total: 6.00 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.00 Total: -56.11 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.07 Total: -9.74 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 0.07 Total: -5.62 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.15 Total: 17.28 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.41 -6.88 -38.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967293145.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.896 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds