Wall clock time and date at job start Wed Apr 1 2020 00:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.44846 * 2 1 4 4 C 1.53033 * 109.46292 * 119.96924 * 2 1 3 5 5 C 1.53191 * 109.31759 * 181.38495 * 4 2 1 6 6 N 1.46927 * 108.77525 * 305.36753 * 5 4 2 7 7 C 1.36931 * 120.62663 * 233.62644 * 6 5 4 8 8 H 1.08004 * 119.99956 * 148.95867 * 7 6 5 9 9 C 1.38815 * 120.00535 * 328.95778 * 7 6 5 10 10 N 1.31613 * 120.00331 * 160.75516 * 9 7 6 11 11 Si 1.86806 * 119.99679 * 340.75423 * 9 7 6 12 12 H 1.48493 * 109.47105 * 88.43044 * 11 9 7 13 13 H 1.48496 * 109.47061 * 208.43320 * 11 9 7 14 14 H 1.48499 * 109.46869 * 328.42968 * 11 9 7 15 15 C 1.46921 * 118.73817 * 53.60274 * 6 5 4 16 16 C 1.53042 * 109.46160 * 240.03836 * 2 1 3 17 17 H 1.09004 * 109.49906 * 58.66056 * 16 2 1 18 18 N 1.46501 * 109.49489 * 298.59700 * 16 2 1 19 19 C 1.34777 * 119.99534 * 154.99916 * 18 16 2 20 20 O 1.21550 * 120.00623 * 0.02562 * 19 18 16 21 21 C 1.47841 * 119.99603 * 179.97438 * 19 18 16 22 22 C 1.40026 * 120.56104 * 327.23300 * 21 19 18 23 23 C 1.38359 * 118.28640 * 179.73099 * 22 21 19 24 24 C 1.38348 * 119.30444 * 0.56656 * 23 22 21 25 25 N 1.31926 * 121.08128 * 359.69704 * 24 23 22 26 26 C 1.31699 * 121.87846 * 0.02562 * 25 24 23 27 27 C 1.50697 * 119.71695 * 180.02562 * 26 25 24 28 28 F 1.39901 * 109.47343 * 13.71203 * 27 26 25 29 29 F 1.39895 * 109.47566 * 133.71958 * 27 26 25 30 30 H 1.09006 * 109.46891 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47076 * 299.96411 * 1 2 3 32 32 H 1.09004 * 109.46905 * 59.96650 * 1 2 3 33 33 H 1.09000 * 109.49700 * 301.34130 * 4 2 1 34 34 H 1.09004 * 109.50150 * 61.43369 * 4 2 1 35 35 H 1.08995 * 109.59159 * 185.57539 * 5 4 2 36 36 H 1.08998 * 109.58404 * 65.15247 * 5 4 2 37 37 H 0.96996 * 120.00370 * 180.02562 * 10 9 7 38 38 H 1.09003 * 109.58691 * 186.60084 * 15 6 5 39 39 H 1.09003 * 109.58686 * 66.18281 * 15 6 5 40 40 H 0.96996 * 120.00368 * 334.99830 * 18 16 2 41 41 H 1.07999 * 120.85376 * 0.02562 * 22 21 19 42 42 H 1.08002 * 120.34755 * 180.25823 * 23 22 21 43 43 H 1.08005 * 119.46194 * 179.71576 * 24 23 22 44 44 H 1.09007 * 109.47037 * 253.71410 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5714 -0.6886 1.2642 6 7 4.0679 -1.2488 -0.0001 7 6 4.9758 -2.2739 -0.0001 8 1 4.9729 -2.9978 -0.8016 9 6 5.8999 -2.3827 1.0300 10 7 6.5072 -3.5292 1.2509 11 14 6.2815 -0.9017 2.1027 12 1 5.3342 -0.8610 3.2455 13 1 7.6713 -1.0066 2.6151 14 1 6.1424 0.3399 1.2999 15 6 3.5714 -0.6885 -1.2643 16 6 2.0399 -0.7207 -1.2501 17 1 1.6572 -0.2206 -2.1399 18 7 1.5795 -2.1114 -1.2347 19 6 1.4510 -2.7914 -2.3912 20 8 1.7174 -2.2511 -3.4470 21 6 0.9870 -4.1950 -2.3757 22 6 1.3093 -5.0396 -1.3064 23 6 0.8458 -6.3429 -1.3375 24 6 0.0959 -6.7693 -2.4191 25 7 -0.1878 -5.9525 -3.4155 26 6 0.2258 -4.7022 -3.4293 27 6 -0.1272 -3.8114 -4.5924 28 9 -1.1327 -4.4159 -5.3545 29 9 -0.5824 -2.5781 -4.1139 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3633 0.5144 -0.8897 33 1 1.6572 -0.2208 2.1397 34 1 1.6979 -1.7557 1.2382 35 1 3.9418 -1.2845 2.0983 36 1 3.9143 0.3409 1.3673 37 1 7.1527 -3.6054 1.9709 38 1 3.9417 -1.2843 -2.0985 39 1 3.9143 0.3411 -1.3674 40 1 1.3673 -2.5427 -0.3923 41 1 1.9004 -4.6816 -0.4765 42 1 1.0711 -7.0217 -0.5282 43 1 -0.2633 -7.7874 -2.4482 44 1 0.7557 -3.6569 -5.2127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967293145.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:05 Heat of formation + Delta-G solvation = -93.531782 kcal Electronic energy + Delta-G solvation = -31139.935023 eV Core-core repulsion = 26727.881879 eV Total energy + Delta-G solvation = -4412.053144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.03053 -48.04188 -41.86530 -40.70673 -39.11389 -36.09950 -34.61651 -33.65832 -33.36339 -33.29969 -31.07233 -29.14534 -27.93012 -26.03211 -25.34971 -24.28225 -23.44998 -22.93635 -22.08309 -20.41348 -19.27706 -18.77697 -18.61625 -18.51521 -18.33437 -17.28473 -17.15988 -16.80527 -16.27524 -16.06732 -15.86825 -15.41089 -15.21314 -15.15554 -15.04701 -14.88054 -14.61341 -14.43434 -14.23727 -14.20275 -13.99170 -13.84952 -13.58426 -13.47126 -13.07388 -12.93240 -12.64733 -12.49588 -12.34886 -12.24846 -11.84272 -11.61001 -11.39229 -11.23174 -11.17014 -11.10051 -10.70043 -10.68911 -10.38854 -10.05356 -8.79948 -8.14753 -5.49062 -0.55646 -0.06881 1.31113 1.44651 1.52442 1.70567 2.10264 2.29300 2.43172 2.53132 3.03246 3.11445 3.23489 3.32657 3.52664 3.70371 3.79017 3.83101 3.91015 3.91694 4.01537 4.09400 4.24618 4.32708 4.34442 4.53837 4.57024 4.69729 4.73799 4.81371 4.87045 4.96088 4.97085 5.00524 5.03879 5.13635 5.20116 5.36716 5.38571 5.44619 5.58014 5.91178 6.14461 6.46444 6.58660 6.95348 7.12830 7.64264 8.05720 9.05068 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014046 B = 0.004143 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.013618 B = 6757.461855 C = 7761.952938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 H 0.092 0.908 4 C -0.121 4.121 5 C 0.117 3.883 6 N -0.610 5.610 7 C -0.238 4.238 8 H 0.041 0.959 9 C -0.026 4.026 10 N -0.955 5.955 11 Si 0.945 3.055 12 H -0.265 1.265 13 H -0.317 1.317 14 H -0.269 1.269 15 C 0.136 3.864 16 C 0.142 3.858 17 H 0.087 0.913 18 N -0.683 5.683 19 C 0.559 3.441 20 O -0.565 6.565 21 C -0.163 4.163 22 C -0.047 4.047 23 C -0.142 4.142 24 C 0.121 3.879 25 N -0.479 5.479 26 C 0.084 3.916 27 C 0.329 3.671 28 F -0.195 7.195 29 F -0.195 7.195 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.031 0.969 37 H 0.260 0.740 38 H 0.038 0.962 39 H 0.042 0.958 40 H 0.405 0.595 41 H 0.150 0.850 42 H 0.185 0.815 43 H 0.208 0.792 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.707 -0.720 -1.848 16.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 H 0.110 0.890 4 C -0.160 4.160 5 C -0.007 4.007 6 N -0.335 5.335 7 C -0.368 4.368 8 H 0.059 0.941 9 C -0.222 4.222 10 N -0.600 5.600 11 Si 0.774 3.226 12 H -0.191 1.191 13 H -0.247 1.247 14 H -0.194 1.194 15 C 0.009 3.991 16 C 0.036 3.964 17 H 0.105 0.895 18 N -0.333 5.333 19 C 0.345 3.655 20 O -0.445 6.445 21 C -0.169 4.169 22 C -0.073 4.073 23 C -0.162 4.162 24 C -0.035 4.035 25 N -0.188 5.188 26 C -0.056 4.056 27 C 0.275 3.725 28 F -0.176 7.176 29 F -0.176 7.176 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.242 0.758 41 H 0.168 0.832 42 H 0.202 0.798 43 H 0.225 0.775 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.947 -0.665 -3.204 17.260 hybrid contribution 1.410 0.510 1.445 2.082 sum -15.537 -0.155 -1.759 15.637 Atomic orbital electron populations 1.21759 0.93219 1.01902 1.02510 1.21299 0.96802 0.99740 0.92745 0.88968 1.21990 0.94901 1.00746 0.98337 1.21472 0.94684 0.96422 0.88162 1.44332 1.48498 1.39684 1.00953 1.18636 1.08331 1.01344 1.08507 0.94125 1.25905 0.97093 0.98674 1.00492 1.69934 1.31430 1.25234 1.33445 0.85957 0.75615 0.81673 0.79327 1.19110 1.24671 1.19432 1.21407 0.92940 0.96843 0.87871 1.21476 0.94147 0.81188 0.99622 0.89458 1.45711 1.65486 1.13900 1.08214 1.18150 0.77362 0.85563 0.84426 1.90723 1.52342 1.69996 1.31456 1.20699 1.02931 0.95732 0.97526 1.22098 0.94883 0.94318 0.96004 1.22687 0.96655 0.95813 1.01009 1.23714 0.92165 1.00304 0.87355 1.67446 1.20525 1.02492 1.28319 1.21690 0.96301 0.93070 0.94508 1.20180 0.88483 0.75983 0.87880 1.92985 1.64524 1.83624 1.76515 1.93000 1.90748 1.44469 1.89421 0.93164 0.90768 0.92541 0.89244 0.92135 0.92846 0.95147 0.93076 0.94300 0.93965 0.75761 0.83216 0.79810 0.77537 0.84092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.05 71.98 0.65 -2.00 16 2 C -0.09 -2.10 2.48 -10.77 -0.03 -2.12 16 3 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 4 C -0.12 -3.22 5.20 30.67 0.16 -3.06 16 5 C 0.12 4.33 4.21 86.36 0.36 4.69 16 6 N -0.61 -26.28 2.63 -699.11 -1.84 -28.12 16 7 C -0.24 -12.75 10.00 84.04 0.84 -11.91 16 8 H 0.04 2.47 8.06 -2.91 -0.02 2.45 16 9 C -0.03 -1.47 5.22 84.86 0.44 -1.02 16 10 N -0.95 -57.29 13.97 21.65 0.30 -56.99 16 11 Si 0.94 44.40 24.40 68.60 1.67 46.07 16 12 H -0.27 -11.38 6.50 99.48 0.65 -10.74 16 13 H -0.32 -15.54 7.11 99.48 0.71 -14.83 16 14 H -0.27 -12.37 6.93 99.48 0.69 -11.68 16 15 C 0.14 5.17 6.12 86.36 0.53 5.70 16 16 C 0.14 4.28 2.24 45.07 0.10 4.38 16 17 H 0.09 2.67 7.58 -2.38 -0.02 2.65 16 18 N -0.68 -20.60 4.18 -445.04 -1.86 -22.46 16 19 C 0.56 18.50 6.50 86.79 0.56 19.06 16 20 O -0.56 -21.39 13.61 -3.87 -0.05 -21.44 16 21 C -0.16 -4.74 5.79 -19.99 -0.12 -4.85 16 22 C -0.05 -1.14 9.46 22.73 0.22 -0.92 16 23 C -0.14 -2.50 10.10 22.32 0.23 -2.27 16 24 C 0.12 2.19 11.17 84.70 0.95 3.13 16 25 N -0.48 -12.26 9.78 -182.84 -1.79 -14.05 16 26 C 0.08 2.41 6.60 42.89 0.28 2.69 16 27 C 0.33 9.53 4.60 71.24 0.33 9.86 16 28 F -0.20 -5.68 16.91 44.97 0.76 -4.92 16 29 F -0.20 -6.24 14.73 44.97 0.66 -5.57 16 30 H 0.05 1.00 7.54 -2.38 -0.02 0.99 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.06 1.62 6.40 -2.39 -0.02 1.60 16 35 H 0.05 2.21 4.78 -2.39 -0.01 2.20 16 36 H 0.03 1.11 7.19 -2.39 -0.02 1.09 16 37 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 38 H 0.04 1.70 7.93 -2.39 -0.02 1.68 16 39 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.41 11.14 5.73 -92.71 -0.53 10.60 16 41 H 0.15 3.74 7.56 -2.91 -0.02 3.71 16 42 H 0.18 1.91 8.06 -2.91 -0.02 1.88 16 43 H 0.21 1.92 8.06 -2.91 -0.02 1.90 16 44 H 0.14 3.81 7.73 -2.38 -0.02 3.79 16 Total: -1.00 -70.73 355.14 3.80 -66.93 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.43 Total: 19.21 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 5.51 Total: 21.34 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -5.19 Total: -121.62 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.05 Total: -21.44 kcal Atomic # 9 Polarization: -11.92 SS G_CDS: 1.42 Total: -10.50 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.67 Total: 46.07 kcal Total: -70.73 3.80 -66.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967293145.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.603 kcal (2) G-P(sol) polarization free energy of solvation -70.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds