Wall clock time and date at job start Wed Apr 1 2020 00:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46433 * 2 1 4 4 C 1.53048 * 109.45762 * 119.95673 * 2 1 3 5 5 C 1.53190 * 109.31460 * 181.38517 * 4 2 1 6 6 N 1.46930 * 108.77456 * 305.36586 * 5 4 2 7 7 C 1.36932 * 120.62800 * 233.63189 * 6 5 4 8 8 H 1.08003 * 120.00364 * 149.05500 * 7 6 5 9 9 C 1.38816 * 119.99865 * 329.04684 * 7 6 5 10 10 N 1.31622 * 119.99704 * 160.53070 * 9 7 6 11 11 Si 1.86797 * 120.00092 * 340.52547 * 9 7 6 12 12 H 1.48497 * 109.46752 * 87.95672 * 11 9 7 13 13 H 1.48503 * 109.47029 * 207.95234 * 11 9 7 14 14 H 1.48495 * 109.47445 * 327.95946 * 11 9 7 15 15 C 1.46927 * 118.73650 * 53.60408 * 6 5 4 16 16 C 1.53043 * 109.46177 * 240.02075 * 2 1 3 17 17 H 1.09004 * 109.49425 * 298.57283 * 16 2 1 18 18 N 1.46497 * 109.49314 * 58.63526 * 16 2 1 19 19 C 1.34782 * 119.99463 * 204.93656 * 18 16 2 20 20 O 1.21547 * 120.00165 * 0.02562 * 19 18 16 21 21 C 1.47845 * 119.99581 * 180.02562 * 19 18 16 22 22 C 1.40021 * 120.55887 * 327.52648 * 21 19 18 23 23 C 1.38360 * 118.28841 * 180.02562 * 22 21 19 24 24 C 1.38349 * 119.29933 * 359.97438 * 23 22 21 25 25 N 1.31925 * 121.08331 * 359.97438 * 24 23 22 26 26 C 1.31696 * 121.87965 * 359.74754 * 25 24 23 27 27 C 1.50697 * 119.71773 * 180.26552 * 26 25 24 28 28 F 1.39901 * 109.47374 * 14.12578 * 27 26 25 29 29 F 1.39905 * 109.46934 * 134.12197 * 27 26 25 30 30 H 1.09000 * 109.47294 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47090 * 299.97547 * 1 2 3 32 32 H 1.09000 * 109.46782 * 59.97461 * 1 2 3 33 33 H 1.09004 * 109.49619 * 301.33675 * 4 2 1 34 34 H 1.09002 * 109.49667 * 61.43150 * 4 2 1 35 35 H 1.09009 * 109.58307 * 65.14734 * 5 4 2 36 36 H 1.08997 * 109.59054 * 185.43520 * 5 4 2 37 37 H 0.96996 * 119.99428 * 179.97438 * 10 9 7 38 38 H 1.09003 * 109.58393 * 186.60409 * 15 6 5 39 39 H 1.08998 * 109.58396 * 66.18799 * 15 6 5 40 40 H 0.96995 * 120.00438 * 24.93688 * 18 16 2 41 41 H 1.08004 * 120.85828 * 0.02562 * 22 21 19 42 42 H 1.07998 * 120.34720 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.46017 * 180.02562 * 24 23 22 44 44 H 1.08991 * 109.47388 * 254.11945 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0398 -0.7206 1.2503 5 6 3.5713 -0.6885 1.2645 6 7 4.0679 -1.2490 0.0004 7 6 4.9756 -2.2741 0.0006 8 1 4.9738 -2.9973 -0.8015 9 6 5.8984 -2.3838 1.0318 10 7 6.5021 -3.5318 1.2553 11 14 6.2835 -0.9021 2.1021 12 1 5.3280 -0.8500 3.2376 13 1 7.6686 -1.0161 2.6255 14 1 6.1601 0.3377 1.2941 15 6 3.5713 -0.6889 -1.2640 16 6 2.0399 -0.7210 -1.2499 17 1 1.6977 -1.7559 -1.2379 18 7 1.5251 -0.0496 -2.4458 19 6 1.3978 -0.7334 -3.6004 20 8 1.7098 -1.9071 -3.6491 21 6 0.8788 -0.0556 -4.8075 22 6 -0.0695 0.9686 -4.6966 23 6 -0.5236 1.5702 -5.8568 24 6 -0.0304 1.1452 -7.0776 25 7 0.8638 0.1781 -7.1515 26 6 1.3304 -0.4215 -6.0758 27 6 2.3559 -1.5167 -6.2165 28 9 2.8840 -1.4975 -7.5119 29 9 3.3848 -1.3140 -5.2904 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5135 0.8902 32 1 -0.3633 0.5142 -0.8898 33 1 1.6571 -0.2204 2.1400 34 1 1.6977 -1.7555 1.2387 35 1 3.9142 0.3411 1.3674 36 1 3.9415 -1.2822 2.1003 37 1 7.1472 -3.6083 1.9757 38 1 3.9417 -1.2850 -2.0981 39 1 3.9144 0.3405 -1.3673 40 1 1.2758 0.8870 -2.4069 41 1 -0.4372 1.2809 -3.7302 42 1 -1.2551 2.3633 -5.8100 43 1 -0.3827 1.6133 -7.9848 44 1 1.8847 -2.4817 -6.0305 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967293146.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:09 Heat of formation + Delta-G solvation = -71.765727 kcal Electronic energy + Delta-G solvation = -30553.727640 eV Core-core repulsion = 26142.618343 eV Total energy + Delta-G solvation = -4411.109297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.88807 -46.89221 -41.00783 -39.54377 -37.87070 -34.79248 -33.59081 -32.87678 -32.50373 -31.41908 -29.44162 -27.75386 -26.96411 -25.08158 -23.88730 -22.95748 -22.46097 -21.31515 -20.64711 -19.81623 -18.23018 -17.75175 -17.55806 -17.28952 -16.83694 -16.31143 -15.74052 -15.54065 -15.20325 -15.06955 -14.66634 -14.24078 -13.97127 -13.77404 -13.73980 -13.63542 -13.49435 -13.29511 -13.21711 -13.09225 -12.70401 -12.54239 -12.22948 -12.12046 -11.72917 -11.49403 -11.32914 -11.00649 -10.88960 -10.71380 -10.47575 -10.27305 -10.17708 -10.00053 -9.84356 -9.69952 -9.65399 -9.48765 -9.05979 -8.51996 -6.92354 -5.91982 -3.31756 0.18012 0.59037 2.60726 2.97838 3.17122 3.31321 3.31751 3.48859 3.52211 3.89190 4.20459 4.25324 4.31838 4.49833 4.54985 4.74257 4.85927 4.93744 4.97218 4.99505 5.02835 5.10733 5.18167 5.40591 5.42872 5.50055 5.67452 5.74667 5.77929 5.87029 5.95058 5.99018 6.04594 6.20191 6.30714 6.42474 6.44581 6.58962 6.66770 6.75571 6.91187 7.28246 7.46210 8.01335 8.14360 8.38966 8.97760 9.74141 10.10824 11.24115 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015138 B = 0.003588 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.249809 B = 7802.592318 C = 9134.678511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.069 0.931 4 C -0.126 4.126 5 C 0.122 3.878 6 N -0.600 5.600 7 C -0.260 4.260 8 H 0.086 0.914 9 C 0.027 3.973 10 N -0.907 5.907 11 Si 0.883 3.117 12 H -0.286 1.286 13 H -0.303 1.303 14 H -0.273 1.273 15 C 0.143 3.857 16 C 0.132 3.868 17 H 0.094 0.906 18 N -0.709 5.709 19 C 0.558 3.442 20 O -0.515 6.515 21 C -0.147 4.147 22 C -0.047 4.047 23 C -0.162 4.162 24 C 0.118 3.882 25 N -0.456 5.456 26 C 0.105 3.895 27 C 0.327 3.673 28 F -0.191 7.191 29 F -0.178 7.178 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.023 0.977 36 H 0.076 0.924 37 H 0.263 0.737 38 H 0.071 0.929 39 H 0.022 0.978 40 H 0.395 0.605 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.168 0.832 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.608 13.161 -11.809 25.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.087 0.913 4 C -0.165 4.165 5 C -0.004 4.004 6 N -0.324 5.324 7 C -0.388 4.388 8 H 0.104 0.896 9 C -0.172 4.172 10 N -0.550 5.550 11 Si 0.714 3.286 12 H -0.214 1.214 13 H -0.231 1.231 14 H -0.199 1.199 15 C 0.015 3.985 16 C 0.027 3.973 17 H 0.112 0.888 18 N -0.359 5.359 19 C 0.342 3.658 20 O -0.391 6.391 21 C -0.153 4.153 22 C -0.073 4.073 23 C -0.181 4.181 24 C -0.040 4.040 25 N -0.164 5.164 26 C -0.036 4.036 27 C 0.273 3.727 28 F -0.172 7.172 29 F -0.159 7.159 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.041 0.959 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.039 0.961 40 H 0.229 0.771 41 H 0.165 0.835 42 H 0.165 0.835 43 H 0.185 0.815 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.864 11.919 -12.564 24.880 hybrid contribution -0.129 1.751 1.476 2.294 sum -17.993 13.670 -11.088 25.170 Atomic orbital electron populations 1.21843 0.95540 1.01903 1.00824 1.21322 0.95008 0.99653 0.95212 0.91298 1.22069 0.98404 1.00658 0.95395 1.21421 0.91621 0.96897 0.90422 1.44274 1.48744 1.40432 0.98932 1.18935 1.07782 1.01524 1.10564 0.89644 1.25348 0.96882 0.96627 0.98366 1.69833 1.30075 1.23132 1.31921 0.86955 0.76412 0.85038 0.80238 1.21388 1.23092 1.19850 1.21242 0.90028 0.96933 0.90266 1.21813 0.96665 0.97347 0.81454 0.88774 1.45956 1.65564 1.14087 1.10294 1.17871 0.78604 0.86717 0.82629 1.90852 1.48685 1.15379 1.84201 1.20862 1.00527 0.99071 0.94806 1.21805 0.93445 0.91927 1.00109 1.22252 1.01387 1.01387 0.93102 1.23035 0.91075 0.91616 0.98226 1.67448 1.10266 1.07700 1.31021 1.21913 0.96903 0.96192 0.88579 1.20110 0.82256 0.97981 0.72371 1.93013 1.87903 1.97683 1.38574 1.93104 1.60833 1.96362 1.65583 0.92579 0.92760 0.93401 0.92206 0.91318 0.95908 0.90562 0.92746 0.91022 0.96055 0.77145 0.83503 0.83451 0.81473 0.84602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.02 37.16 0.34 -1.19 16 2 C -0.09 -1.27 2.27 -90.57 -0.21 -1.48 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 4 C -0.13 -2.05 5.36 -26.61 -0.14 -2.20 16 5 C 0.12 2.57 4.21 -3.71 -0.02 2.56 16 6 N -0.60 -14.32 2.71 -172.32 -0.47 -14.79 16 7 C -0.26 -7.42 10.00 -15.06 -0.15 -7.58 16 8 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 9 C 0.03 0.79 5.22 -17.43 -0.09 0.69 16 10 N -0.91 -28.18 13.97 55.49 0.78 -27.41 16 11 Si 0.88 22.43 24.41 -169.99 -4.15 18.28 16 12 H -0.29 -6.88 6.48 56.52 0.37 -6.52 16 13 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 14 H -0.27 -6.86 6.97 56.52 0.39 -6.47 16 15 C 0.14 2.90 6.09 -3.71 -0.02 2.88 16 16 C 0.13 2.11 2.06 -67.82 -0.14 1.97 16 17 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 18 N -0.71 -8.91 4.29 -54.64 -0.23 -9.15 16 19 C 0.56 7.84 6.49 -12.33 -0.08 7.76 16 20 O -0.52 -9.20 13.63 5.32 0.07 -9.12 16 21 C -0.15 -1.67 5.79 -104.82 -0.61 -2.28 16 22 C -0.05 -0.35 9.46 -38.87 -0.37 -0.71 16 23 C -0.16 -0.94 10.10 -39.50 -0.40 -1.34 16 24 C 0.12 0.88 11.17 -17.47 -0.20 0.69 16 25 N -0.46 -5.21 9.78 -9.15 -0.09 -5.30 16 26 C 0.10 1.32 6.60 -82.17 -0.54 0.78 16 27 C 0.33 4.59 4.60 36.00 0.17 4.75 16 28 F -0.19 -2.78 16.92 2.25 0.04 -2.74 16 29 F -0.18 -3.03 14.73 2.25 0.03 -3.00 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.41 7.36 -51.93 -0.38 0.03 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.02 0.47 7.22 -51.92 -0.37 0.10 16 36 H 0.08 1.78 4.77 -51.93 -0.25 1.53 16 37 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 38 H 0.07 1.63 7.93 -51.93 -0.41 1.22 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.39 3.64 7.38 -40.82 -0.30 3.33 16 41 H 0.15 0.68 7.55 -52.48 -0.40 0.29 16 42 H 0.15 0.35 8.06 -52.49 -0.42 -0.07 16 43 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.14 1.70 7.74 -51.93 -0.40 1.30 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -35.00 358.31 -6.97 -41.97 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.89 Total: 0.53 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -2.46 Total: 5.32 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.02 Total: -56.64 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.07 Total: -9.12 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 0.07 Total: -5.74 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.15 Total: 18.28 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.00 -6.97 -41.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967293146.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.795 kcal (2) G-P(sol) polarization free energy of solvation -34.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds