Wall clock time and date at job start Wed Apr 1 2020 00:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46433 * 2 1 4 4 C 1.53048 * 109.45762 * 119.95673 * 2 1 3 5 5 C 1.53190 * 109.31460 * 181.38517 * 4 2 1 6 6 N 1.46930 * 108.77456 * 305.36586 * 5 4 2 7 7 C 1.36932 * 120.62800 * 233.63189 * 6 5 4 8 8 H 1.08003 * 120.00364 * 149.05500 * 7 6 5 9 9 C 1.38816 * 119.99865 * 329.04684 * 7 6 5 10 10 N 1.31622 * 119.99704 * 160.53070 * 9 7 6 11 11 Si 1.86797 * 120.00092 * 340.52547 * 9 7 6 12 12 H 1.48497 * 109.46752 * 87.95672 * 11 9 7 13 13 H 1.48503 * 109.47029 * 207.95234 * 11 9 7 14 14 H 1.48495 * 109.47445 * 327.95946 * 11 9 7 15 15 C 1.46927 * 118.73650 * 53.60408 * 6 5 4 16 16 C 1.53043 * 109.46177 * 240.02075 * 2 1 3 17 17 H 1.09004 * 109.49425 * 298.57283 * 16 2 1 18 18 N 1.46497 * 109.49314 * 58.63526 * 16 2 1 19 19 C 1.34782 * 119.99463 * 204.93656 * 18 16 2 20 20 O 1.21547 * 120.00165 * 0.02562 * 19 18 16 21 21 C 1.47845 * 119.99581 * 180.02562 * 19 18 16 22 22 C 1.40021 * 120.55887 * 327.52648 * 21 19 18 23 23 C 1.38360 * 118.28841 * 180.02562 * 22 21 19 24 24 C 1.38349 * 119.29933 * 359.97438 * 23 22 21 25 25 N 1.31925 * 121.08331 * 359.97438 * 24 23 22 26 26 C 1.31696 * 121.87965 * 359.74754 * 25 24 23 27 27 C 1.50697 * 119.71773 * 180.26552 * 26 25 24 28 28 F 1.39901 * 109.47374 * 14.12578 * 27 26 25 29 29 F 1.39905 * 109.46934 * 134.12197 * 27 26 25 30 30 H 1.09000 * 109.47294 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47090 * 299.97547 * 1 2 3 32 32 H 1.09000 * 109.46782 * 59.97461 * 1 2 3 33 33 H 1.09004 * 109.49619 * 301.33675 * 4 2 1 34 34 H 1.09002 * 109.49667 * 61.43150 * 4 2 1 35 35 H 1.09009 * 109.58307 * 65.14734 * 5 4 2 36 36 H 1.08997 * 109.59054 * 185.43520 * 5 4 2 37 37 H 0.96996 * 119.99428 * 179.97438 * 10 9 7 38 38 H 1.09003 * 109.58393 * 186.60409 * 15 6 5 39 39 H 1.08998 * 109.58396 * 66.18799 * 15 6 5 40 40 H 0.96995 * 120.00438 * 24.93688 * 18 16 2 41 41 H 1.08004 * 120.85828 * 0.02562 * 22 21 19 42 42 H 1.07998 * 120.34720 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.46017 * 180.02562 * 24 23 22 44 44 H 1.08991 * 109.47388 * 254.11945 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0398 -0.7206 1.2503 5 6 3.5713 -0.6885 1.2645 6 7 4.0679 -1.2490 0.0004 7 6 4.9756 -2.2741 0.0006 8 1 4.9738 -2.9973 -0.8015 9 6 5.8984 -2.3838 1.0318 10 7 6.5021 -3.5318 1.2553 11 14 6.2835 -0.9021 2.1021 12 1 5.3280 -0.8500 3.2376 13 1 7.6686 -1.0161 2.6255 14 1 6.1601 0.3377 1.2941 15 6 3.5713 -0.6889 -1.2640 16 6 2.0399 -0.7210 -1.2499 17 1 1.6977 -1.7559 -1.2379 18 7 1.5251 -0.0496 -2.4458 19 6 1.3978 -0.7334 -3.6004 20 8 1.7098 -1.9071 -3.6491 21 6 0.8788 -0.0556 -4.8075 22 6 -0.0695 0.9686 -4.6966 23 6 -0.5236 1.5702 -5.8568 24 6 -0.0304 1.1452 -7.0776 25 7 0.8638 0.1781 -7.1515 26 6 1.3304 -0.4215 -6.0758 27 6 2.3559 -1.5167 -6.2165 28 9 2.8840 -1.4975 -7.5119 29 9 3.3848 -1.3140 -5.2904 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5135 0.8902 32 1 -0.3633 0.5142 -0.8898 33 1 1.6571 -0.2204 2.1400 34 1 1.6977 -1.7555 1.2387 35 1 3.9142 0.3411 1.3674 36 1 3.9415 -1.2822 2.1003 37 1 7.1472 -3.6083 1.9757 38 1 3.9417 -1.2850 -2.0981 39 1 3.9144 0.3405 -1.3673 40 1 1.2758 0.8870 -2.4069 41 1 -0.4372 1.2809 -3.7302 42 1 -1.2551 2.3633 -5.8100 43 1 -0.3827 1.6133 -7.9848 44 1 1.8847 -2.4817 -6.0305 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967293146.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:08 Heat of formation + Delta-G solvation = -97.464334 kcal Electronic energy + Delta-G solvation = -30554.842015 eV Core-core repulsion = 26142.618343 eV Total energy + Delta-G solvation = -4412.223672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.07238 -48.09601 -41.86616 -40.63331 -39.22220 -36.33515 -34.80303 -33.78455 -33.41503 -33.31051 -30.83166 -29.20756 -27.95608 -26.07325 -25.44658 -24.18420 -23.38194 -22.89745 -21.77623 -21.19175 -19.16779 -18.83571 -18.70426 -18.57681 -18.32473 -17.47949 -17.16572 -16.72725 -16.36662 -16.21880 -15.71275 -15.63378 -15.24993 -15.21846 -14.94514 -14.82649 -14.70172 -14.47125 -14.34670 -14.29226 -13.98487 -13.75841 -13.56181 -13.50143 -13.27404 -12.68620 -12.59780 -12.55110 -12.49585 -12.24401 -11.77424 -11.65568 -11.44297 -11.30003 -11.20263 -11.09816 -10.81923 -10.64131 -10.39064 -10.17873 -8.89145 -8.19525 -5.56622 -0.55372 -0.01911 1.28530 1.40601 1.51080 1.61259 1.97051 2.27809 2.40133 2.56294 3.02952 3.04923 3.21974 3.31326 3.54763 3.67648 3.72947 3.82741 3.89303 3.93745 4.01815 4.06999 4.25944 4.31627 4.37350 4.42941 4.53600 4.58320 4.82597 4.84987 4.87547 4.94243 4.97076 5.00062 5.05267 5.14299 5.17560 5.32840 5.42439 5.44748 5.56851 5.85861 6.10280 6.42641 6.63088 6.89823 7.12721 7.58073 7.97147 9.01252 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015138 B = 0.003588 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.249809 B = 7802.592318 C = 9134.678511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.084 4.084 3 H 0.094 0.906 4 C -0.120 4.120 5 C 0.114 3.886 6 N -0.616 5.616 7 C -0.258 4.258 8 H 0.031 0.969 9 C -0.033 4.033 10 N -0.959 5.959 11 Si 0.958 3.042 12 H -0.259 1.259 13 H -0.310 1.310 14 H -0.263 1.263 15 C 0.143 3.857 16 C 0.149 3.851 17 H 0.058 0.942 18 N -0.692 5.692 19 C 0.555 3.445 20 O -0.566 6.566 21 C -0.162 4.162 22 C -0.037 4.037 23 C -0.136 4.136 24 C 0.115 3.885 25 N -0.486 5.486 26 C 0.082 3.918 27 C 0.318 3.682 28 F -0.198 7.198 29 F -0.202 7.202 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.048 0.952 35 H 0.041 0.959 36 H 0.051 0.949 37 H 0.264 0.736 38 H 0.028 0.972 39 H 0.038 0.962 40 H 0.417 0.583 41 H 0.184 0.816 42 H 0.198 0.802 43 H 0.203 0.797 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.553 18.522 -11.076 31.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.103 4.103 3 H 0.112 0.888 4 C -0.159 4.159 5 C -0.010 4.010 6 N -0.341 5.341 7 C -0.388 4.388 8 H 0.049 0.951 9 C -0.228 4.228 10 N -0.605 5.605 11 Si 0.785 3.215 12 H -0.184 1.184 13 H -0.238 1.238 14 H -0.188 1.188 15 C 0.016 3.984 16 C 0.042 3.958 17 H 0.076 0.924 18 N -0.343 5.343 19 C 0.342 3.658 20 O -0.445 6.445 21 C -0.168 4.168 22 C -0.063 4.063 23 C -0.155 4.155 24 C -0.042 4.042 25 N -0.195 5.195 26 C -0.057 4.057 27 C 0.263 3.737 28 F -0.179 7.179 29 F -0.184 7.184 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.116 0.884 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.046 0.954 39 H 0.056 0.944 40 H 0.255 0.745 41 H 0.201 0.799 42 H 0.215 0.785 43 H 0.220 0.780 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -21.872 17.350 -11.842 30.326 hybrid contribution 1.033 0.058 1.065 1.485 sum -20.839 17.408 -10.776 29.214 Atomic orbital electron populations 1.21788 0.92345 1.01834 1.03369 1.21294 0.97509 0.99742 0.91761 0.88790 1.21997 0.94659 1.00664 0.98610 1.21565 0.95011 0.96670 0.87797 1.44327 1.48510 1.39858 1.01363 1.18733 1.09212 1.01813 1.09016 0.95077 1.26076 0.96733 0.99487 1.00472 1.69992 1.31415 1.25573 1.33484 0.85746 0.76010 0.80687 0.79008 1.18430 1.23828 1.18751 1.21286 0.93278 0.96318 0.87489 1.21300 0.93278 0.96748 0.84429 0.92367 1.45647 1.64857 1.14945 1.08882 1.18404 0.77596 0.86236 0.83613 1.90833 1.50747 1.17904 1.85004 1.20620 1.02649 1.01017 0.92509 1.22260 0.91491 0.89910 1.02623 1.22782 1.00427 1.00940 0.91329 1.23794 0.89515 0.90108 1.00765 1.67409 1.12038 1.09323 1.30752 1.21510 0.97599 0.96843 0.89779 1.20349 0.82129 0.99758 0.71423 1.92977 1.88134 1.97841 1.38989 1.93041 1.62182 1.96575 1.66561 0.94042 0.90426 0.90650 0.88371 0.93297 0.94111 0.93092 0.92760 0.95359 0.94422 0.74477 0.79866 0.78471 0.78026 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.02 71.98 0.65 -1.58 16 2 C -0.08 -2.00 2.27 -10.76 -0.02 -2.03 16 3 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 4 C -0.12 -3.61 5.36 30.67 0.16 -3.45 16 5 C 0.11 4.63 4.21 86.36 0.36 5.00 16 6 N -0.62 -30.27 2.71 -699.09 -1.90 -32.16 16 7 C -0.26 -15.76 10.00 84.04 0.84 -14.92 16 8 H 0.03 2.18 8.06 -2.91 -0.02 2.15 16 9 C -0.03 -2.00 5.22 84.86 0.44 -1.56 16 10 N -0.96 -62.88 13.97 21.65 0.30 -62.58 16 11 Si 0.96 47.16 24.41 68.60 1.67 48.83 16 12 H -0.26 -11.51 6.48 99.48 0.64 -10.87 16 13 H -0.31 -15.48 7.11 99.48 0.71 -14.77 16 14 H -0.26 -12.37 6.97 99.48 0.69 -11.68 16 15 C 0.14 6.01 6.09 86.36 0.53 6.53 16 16 C 0.15 4.71 2.06 45.07 0.09 4.81 16 17 H 0.06 2.29 7.58 -2.38 -0.02 2.27 16 18 N -0.69 -16.28 4.29 -445.05 -1.91 -18.19 16 19 C 0.56 15.76 6.49 86.79 0.56 16.33 16 20 O -0.57 -21.86 13.63 -3.86 -0.05 -21.91 16 21 C -0.16 -3.47 5.79 -19.99 -0.12 -3.59 16 22 C -0.04 -0.38 9.46 22.73 0.22 -0.16 16 23 C -0.14 -0.79 10.10 22.33 0.23 -0.56 16 24 C 0.12 1.28 11.17 84.71 0.95 2.22 16 25 N -0.49 -10.53 9.78 -182.85 -1.79 -12.32 16 26 C 0.08 2.09 6.60 42.89 0.28 2.37 16 27 C 0.32 9.76 4.60 71.23 0.33 10.08 16 28 F -0.20 -6.26 16.92 44.97 0.76 -5.50 16 29 F -0.20 -7.64 14.73 44.97 0.66 -6.98 16 30 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 0.84 7.36 -2.39 -0.02 0.82 16 33 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.04 1.54 7.22 -2.38 -0.02 1.52 16 36 H 0.05 2.32 4.77 -2.39 -0.01 2.31 16 37 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 38 H 0.03 1.40 7.93 -2.39 -0.02 1.38 16 39 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.42 5.94 7.38 -92.71 -0.68 5.26 16 41 H 0.18 0.46 7.55 -2.91 -0.02 0.44 16 42 H 0.20 -0.72 8.06 -2.91 -0.02 -0.74 16 43 H 0.20 0.68 8.06 -2.91 -0.02 0.65 16 44 H 0.14 3.94 7.74 -2.39 -0.02 3.93 16 Total: -1.00 -87.76 358.31 3.53 -84.23 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 0.28 Total: 7.08 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 5.50 Total: 19.50 kcal Atomic # 7 Polarization: -119.96 SS G_CDS: -5.30 Total: -125.25 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.05 Total: -21.91 kcal Atomic # 9 Polarization: -13.90 SS G_CDS: 1.42 Total: -12.48 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 1.67 Total: 48.83 kcal Total: -87.76 3.53 -84.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967293146.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.234 kcal (2) G-P(sol) polarization free energy of solvation -87.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds