Wall clock time and date at job start Wed Apr 1 2020 00:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.45907 * 2 1 4 4 C 1.53348 * 109.42186 * 240.09131 * 2 1 3 5 5 C 1.53188 * 109.14862 * 178.67600 * 4 2 1 6 6 N 1.46927 * 108.89428 * 54.57993 * 5 4 2 7 7 C 1.36933 * 120.63022 * 126.33925 * 6 5 4 8 8 H 1.08000 * 120.00191 * 331.82823 * 7 6 5 9 9 C 1.38816 * 120.00216 * 151.82741 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.07025 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.07047 * 9 7 6 12 12 H 1.48493 * 109.47484 * 90.00085 * 11 9 7 13 13 H 1.48503 * 109.47169 * 210.00310 * 11 9 7 14 14 H 1.48506 * 109.47138 * 329.99723 * 11 9 7 15 15 C 1.46927 * 118.73625 * 306.32307 * 6 5 4 16 16 C 1.53047 * 109.45598 * 119.96396 * 2 1 3 17 17 H 1.08995 * 109.49781 * 301.33868 * 16 2 1 18 18 N 1.46503 * 109.51988 * 61.41984 * 16 2 1 19 19 C 1.34777 * 119.99786 * 204.84835 * 18 16 2 20 20 O 1.21551 * 119.99934 * 0.02562 * 19 18 16 21 21 C 1.47834 * 119.99763 * 180.02562 * 19 18 16 22 22 C 1.40022 * 120.56435 * 359.73123 * 21 19 18 23 23 C 1.38355 * 118.29126 * 179.73765 * 22 21 19 24 24 C 1.38354 * 119.29999 * 0.53052 * 23 22 21 25 25 N 1.31921 * 121.08344 * 359.72994 * 24 23 22 26 26 C 1.31696 * 121.87789 * 359.97438 * 25 24 23 27 27 C 1.50698 * 119.71771 * 180.02562 * 26 25 24 28 28 F 1.39893 * 109.47571 * 119.97421 * 27 26 25 29 29 F 1.39903 * 109.46889 * 239.97571 * 27 26 25 30 30 H 1.08999 * 109.47631 * 300.03785 * 1 2 3 31 31 H 1.09003 * 109.46594 * 60.03773 * 1 2 3 32 32 H 1.09002 * 109.47240 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.68200 * 58.71226 * 4 2 1 34 34 H 1.08993 * 109.47490 * 298.51759 * 4 2 1 35 35 H 1.09007 * 109.58820 * 294.72168 * 5 4 2 36 36 H 1.09000 * 109.58865 * 174.43884 * 5 4 2 37 37 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 38 38 H 1.08997 * 109.58424 * 173.39841 * 15 6 5 39 39 H 1.08997 * 109.58254 * 293.81449 * 15 6 5 40 40 H 0.96997 * 120.00219 * 24.85469 * 18 16 2 41 41 H 1.08006 * 120.85165 * 359.96897 * 22 21 19 42 42 H 1.07995 * 120.34762 * 180.23821 * 23 22 21 43 43 H 1.08004 * 119.45593 * 179.75130 * 24 23 22 44 44 H 1.09001 * 109.47180 * 359.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2536 5 6 3.5714 -0.6886 -1.2641 6 7 4.0679 -1.2488 0.0002 7 6 4.9764 -2.2733 0.0003 8 1 5.0044 -2.9703 -0.8243 9 6 5.8614 -2.4163 1.0601 10 7 6.0658 -1.4124 1.8866 11 14 6.7621 -4.0329 1.3134 12 1 8.0466 -4.0060 0.5688 13 1 7.0329 -4.2273 2.7606 14 1 5.9228 -5.1510 0.8124 15 6 3.5712 -0.6886 1.2644 16 6 2.0398 -0.7208 1.2502 17 1 1.6571 -0.2207 2.1399 18 7 1.5800 -2.1117 1.2351 19 6 1.4545 -2.7925 2.3914 20 8 1.7224 -2.2524 3.4469 21 6 0.9911 -4.1963 2.3761 22 6 0.6739 -4.8282 1.1675 23 6 0.2501 -6.1447 1.2074 24 6 0.1435 -6.7850 2.4292 25 7 0.4441 -6.1625 3.5528 26 6 0.8573 -4.9122 3.5662 27 6 1.1881 -4.2487 4.8782 28 9 2.5275 -3.8449 4.8721 29 9 0.3650 -3.1315 5.0564 30 1 -0.3634 0.5144 0.8896 31 1 -0.3632 0.5133 -0.8904 32 1 -0.3634 -1.0277 0.0005 33 1 1.6593 -0.2219 -2.1447 34 1 1.6981 -1.7560 -1.2419 35 1 3.9144 0.3410 -1.3671 36 1 3.9439 -1.2830 -2.0984 37 1 6.6845 -1.5121 2.6270 38 1 3.9415 -1.2845 2.0986 39 1 3.9142 0.3409 1.3675 40 1 1.3659 -2.5426 0.3928 41 1 0.7615 -4.3027 0.2280 42 1 0.0006 -6.6654 0.2948 43 1 -0.1909 -7.8113 2.4636 44 1 1.0249 -4.9538 5.6933 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967293147.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:13 Heat of formation + Delta-G solvation = -70.517238 kcal Electronic energy + Delta-G solvation = -31782.653929 eV Core-core repulsion = 27371.598771 eV Total energy + Delta-G solvation = -4411.055158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.46433 -46.44082 -40.65287 -39.25561 -37.43309 -34.20566 -33.41668 -32.46710 -32.08543 -31.00582 -29.18248 -27.40233 -26.66050 -24.69929 -24.01204 -22.67073 -22.02782 -21.10905 -20.75236 -18.74305 -18.11530 -17.41241 -17.18028 -16.76003 -16.71491 -15.91858 -15.27370 -15.02988 -14.92692 -14.66991 -14.34733 -13.89741 -13.81884 -13.60632 -13.37281 -13.27172 -13.15871 -13.01770 -12.89308 -12.67951 -12.58460 -12.05520 -11.92490 -11.60805 -11.40877 -11.13901 -11.07598 -10.91581 -10.70983 -10.54282 -10.23981 -10.14179 -9.98174 -9.92155 -9.69973 -9.52709 -9.37818 -9.33108 -8.44618 -8.37406 -6.63607 -5.75522 -3.18806 0.47431 0.88358 3.04923 3.38539 3.44564 3.45391 3.48481 3.51588 3.83523 4.27749 4.45156 4.51313 4.53940 4.66573 4.87185 5.06474 5.14444 5.20412 5.23838 5.32262 5.36514 5.39711 5.44201 5.54789 5.72375 5.80947 5.84152 5.90101 5.97260 6.11972 6.23671 6.27396 6.34504 6.41450 6.51986 6.63187 6.72390 6.85900 6.96388 7.36566 7.52404 7.68900 7.81623 8.00502 8.48223 8.68709 9.22835 9.87035 10.42636 11.32368 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009369 B = 0.005903 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.748619 B = 4742.550840 C = 5824.189604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.079 0.921 4 C -0.128 4.128 5 C 0.142 3.858 6 N -0.586 5.586 7 C -0.257 4.257 8 H 0.062 0.938 9 C 0.010 3.990 10 N -0.894 5.894 11 Si 0.895 3.105 12 H -0.287 1.287 13 H -0.288 1.288 14 H -0.282 1.282 15 C 0.160 3.840 16 C 0.127 3.873 17 H 0.079 0.921 18 N -0.688 5.688 19 C 0.549 3.451 20 O -0.510 6.510 21 C -0.132 4.132 22 C -0.045 4.045 23 C -0.159 4.159 24 C 0.112 3.888 25 N -0.465 5.465 26 C 0.096 3.904 27 C 0.338 3.662 28 F -0.176 7.176 29 F -0.184 7.184 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.018 0.982 36 H 0.053 0.947 37 H 0.255 0.745 38 H 0.099 0.901 39 H 0.026 0.974 40 H 0.392 0.608 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.167 0.833 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.458 -6.361 -2.527 16.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.097 0.903 4 C -0.168 4.168 5 C 0.015 3.985 6 N -0.309 5.309 7 C -0.387 4.387 8 H 0.080 0.920 9 C -0.190 4.190 10 N -0.537 5.537 11 Si 0.725 3.275 12 H -0.214 1.214 13 H -0.214 1.214 14 H -0.208 1.208 15 C 0.033 3.967 16 C 0.022 3.978 17 H 0.097 0.903 18 N -0.339 5.339 19 C 0.333 3.667 20 O -0.387 6.387 21 C -0.138 4.138 22 C -0.072 4.072 23 C -0.179 4.179 24 C -0.046 4.046 25 N -0.173 5.173 26 C -0.044 4.044 27 C 0.284 3.716 28 F -0.157 7.157 29 F -0.165 7.165 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.036 0.964 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.117 0.883 39 H 0.044 0.956 40 H 0.227 0.773 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.184 0.816 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.181 -6.332 -0.826 16.469 hybrid contribution 0.620 -0.627 -1.267 1.544 sum -14.561 -6.959 -2.093 16.273 Atomic orbital electron populations 1.21849 0.96003 1.01232 1.01061 1.21381 0.94566 0.99993 0.95406 0.90264 1.22132 0.99347 0.99172 0.96114 1.20928 0.90628 0.96593 0.90343 1.43965 1.48262 1.39596 0.99084 1.19013 1.09972 1.03077 1.06616 0.92035 1.25001 0.97104 0.97071 0.99806 1.69980 1.36994 1.28899 1.17852 0.86429 0.79670 0.84056 0.77375 1.21427 1.21401 1.20752 1.21213 0.86538 0.97889 0.91046 1.21841 0.99049 0.79870 0.97053 0.90305 1.45653 1.66479 1.14188 1.07584 1.17773 0.79101 0.84846 0.85024 1.90872 1.49027 1.68835 1.29943 1.21055 1.01504 0.96871 0.94344 1.21850 0.92865 0.94752 0.97696 1.22220 1.00309 0.95206 1.00126 1.22909 0.94444 0.99974 0.87237 1.67303 1.10424 1.08067 1.31529 1.21899 0.96558 0.90942 0.95003 1.19746 0.74227 0.83798 0.93876 1.93110 1.33629 1.91725 1.97195 1.93030 1.72038 1.55553 1.95884 0.92987 0.93117 0.93245 0.92692 0.93026 0.96420 0.92884 0.93514 0.88325 0.95588 0.77271 0.83786 0.83572 0.81621 0.86477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.05 37.16 0.34 -1.46 16 2 C -0.09 -1.44 2.48 -90.41 -0.22 -1.66 16 3 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 4 C -0.13 -1.94 5.23 -26.45 -0.14 -2.08 16 5 C 0.14 2.75 6.50 -3.71 -0.02 2.73 16 6 N -0.59 -13.97 2.91 -172.32 -0.50 -14.47 16 7 C -0.26 -6.90 9.58 -15.06 -0.14 -7.04 16 8 H 0.06 1.62 7.88 -52.49 -0.41 1.21 16 9 C 0.01 0.28 4.92 -17.43 -0.09 0.19 16 10 N -0.89 -26.61 11.20 55.49 0.62 -25.98 16 11 Si 0.89 22.44 29.59 -169.99 -5.03 17.41 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 C 0.16 3.81 4.90 -3.71 -0.02 3.79 16 16 C 0.13 2.39 2.24 -67.81 -0.15 2.24 16 17 H 0.08 1.55 7.58 -51.93 -0.39 1.15 16 18 N -0.69 -12.11 4.21 -54.64 -0.23 -12.34 16 19 C 0.55 10.58 7.55 -12.33 -0.09 10.49 16 20 O -0.51 -11.50 11.00 5.32 0.06 -11.44 16 21 C -0.13 -2.17 5.85 -104.82 -0.61 -2.78 16 22 C -0.05 -0.57 9.65 -38.87 -0.37 -0.94 16 23 C -0.16 -1.56 10.10 -39.50 -0.40 -1.96 16 24 C 0.11 1.17 11.17 -17.47 -0.20 0.98 16 25 N -0.46 -6.41 10.24 -9.14 -0.09 -6.50 16 26 C 0.10 1.55 6.31 -82.17 -0.52 1.03 16 27 C 0.34 5.65 5.02 36.00 0.18 5.83 16 28 F -0.18 -3.63 15.04 2.25 0.03 -3.60 16 29 F -0.18 -3.33 15.03 2.25 0.03 -3.30 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.59 7.54 -51.93 -0.39 0.20 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.75 6.41 -51.93 -0.33 0.42 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 37 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.10 2.80 6.06 -51.93 -0.31 2.49 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.39 6.02 4.75 -40.82 -0.19 5.82 16 41 H 0.14 1.51 6.52 -52.48 -0.34 1.16 16 42 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.17 1.09 8.06 -52.48 -0.42 0.67 16 44 H 0.12 1.50 8.11 -51.93 -0.42 1.08 16 LS Contribution 357.15 15.07 5.38 5.38 Total: -1.00 -33.81 357.15 -7.92 -41.73 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.73 Total: 3.77 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: -2.46 Total: 9.35 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.20 Total: -59.30 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.06 Total: -11.44 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 0.07 Total: -6.90 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.81 -7.92 -41.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967293147.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.785 kcal (2) G-P(sol) polarization free energy of solvation -33.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds