Wall clock time and date at job start Wed Apr 1 2020 00:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.45907 * 2 1 4 4 C 1.53348 * 109.42186 * 240.09131 * 2 1 3 5 5 C 1.53188 * 109.14862 * 178.67600 * 4 2 1 6 6 N 1.46927 * 108.89428 * 54.57993 * 5 4 2 7 7 C 1.36933 * 120.63022 * 126.33925 * 6 5 4 8 8 H 1.08000 * 120.00191 * 331.82823 * 7 6 5 9 9 C 1.38816 * 120.00216 * 151.82741 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.07025 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.07047 * 9 7 6 12 12 H 1.48493 * 109.47484 * 90.00085 * 11 9 7 13 13 H 1.48503 * 109.47169 * 210.00310 * 11 9 7 14 14 H 1.48506 * 109.47138 * 329.99723 * 11 9 7 15 15 C 1.46927 * 118.73625 * 306.32307 * 6 5 4 16 16 C 1.53047 * 109.45598 * 119.96396 * 2 1 3 17 17 H 1.08995 * 109.49781 * 301.33868 * 16 2 1 18 18 N 1.46503 * 109.51988 * 61.41984 * 16 2 1 19 19 C 1.34777 * 119.99786 * 204.84835 * 18 16 2 20 20 O 1.21551 * 119.99934 * 0.02562 * 19 18 16 21 21 C 1.47834 * 119.99763 * 180.02562 * 19 18 16 22 22 C 1.40022 * 120.56435 * 359.73123 * 21 19 18 23 23 C 1.38355 * 118.29126 * 179.73765 * 22 21 19 24 24 C 1.38354 * 119.29999 * 0.53052 * 23 22 21 25 25 N 1.31921 * 121.08344 * 359.72994 * 24 23 22 26 26 C 1.31696 * 121.87789 * 359.97438 * 25 24 23 27 27 C 1.50698 * 119.71771 * 180.02562 * 26 25 24 28 28 F 1.39893 * 109.47571 * 119.97421 * 27 26 25 29 29 F 1.39903 * 109.46889 * 239.97571 * 27 26 25 30 30 H 1.08999 * 109.47631 * 300.03785 * 1 2 3 31 31 H 1.09003 * 109.46594 * 60.03773 * 1 2 3 32 32 H 1.09002 * 109.47240 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.68200 * 58.71226 * 4 2 1 34 34 H 1.08993 * 109.47490 * 298.51759 * 4 2 1 35 35 H 1.09007 * 109.58820 * 294.72168 * 5 4 2 36 36 H 1.09000 * 109.58865 * 174.43884 * 5 4 2 37 37 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 38 38 H 1.08997 * 109.58424 * 173.39841 * 15 6 5 39 39 H 1.08997 * 109.58254 * 293.81449 * 15 6 5 40 40 H 0.96997 * 120.00219 * 24.85469 * 18 16 2 41 41 H 1.08006 * 120.85165 * 359.96897 * 22 21 19 42 42 H 1.07995 * 120.34762 * 180.23821 * 23 22 21 43 43 H 1.08004 * 119.45593 * 179.75130 * 24 23 22 44 44 H 1.09001 * 109.47180 * 359.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2536 5 6 3.5714 -0.6886 -1.2641 6 7 4.0679 -1.2488 0.0002 7 6 4.9764 -2.2733 0.0003 8 1 5.0044 -2.9703 -0.8243 9 6 5.8614 -2.4163 1.0601 10 7 6.0658 -1.4124 1.8866 11 14 6.7621 -4.0329 1.3134 12 1 8.0466 -4.0060 0.5688 13 1 7.0329 -4.2273 2.7606 14 1 5.9228 -5.1510 0.8124 15 6 3.5712 -0.6886 1.2644 16 6 2.0398 -0.7208 1.2502 17 1 1.6571 -0.2207 2.1399 18 7 1.5800 -2.1117 1.2351 19 6 1.4545 -2.7925 2.3914 20 8 1.7224 -2.2524 3.4469 21 6 0.9911 -4.1963 2.3761 22 6 0.6739 -4.8282 1.1675 23 6 0.2501 -6.1447 1.2074 24 6 0.1435 -6.7850 2.4292 25 7 0.4441 -6.1625 3.5528 26 6 0.8573 -4.9122 3.5662 27 6 1.1881 -4.2487 4.8782 28 9 2.5275 -3.8449 4.8721 29 9 0.3650 -3.1315 5.0564 30 1 -0.3634 0.5144 0.8896 31 1 -0.3632 0.5133 -0.8904 32 1 -0.3634 -1.0277 0.0005 33 1 1.6593 -0.2219 -2.1447 34 1 1.6981 -1.7560 -1.2419 35 1 3.9144 0.3410 -1.3671 36 1 3.9439 -1.2830 -2.0984 37 1 6.6845 -1.5121 2.6270 38 1 3.9415 -1.2845 2.0986 39 1 3.9142 0.3409 1.3675 40 1 1.3659 -2.5426 0.3928 41 1 0.7615 -4.3027 0.2280 42 1 0.0006 -6.6654 0.2948 43 1 -0.1909 -7.8113 2.4636 44 1 1.0249 -4.9538 5.6933 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967293147.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:12 Heat of formation + Delta-G solvation = -93.148596 kcal Electronic energy + Delta-G solvation = -31783.635298 eV Core-core repulsion = 27371.598771 eV Total energy + Delta-G solvation = -4412.036527 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.84391 -47.85802 -41.79083 -40.59782 -38.94079 -35.96514 -34.72321 -33.69251 -33.18667 -32.77702 -30.74684 -28.95405 -27.88111 -26.01394 -25.52753 -24.04117 -23.28313 -22.75578 -22.03034 -20.32961 -19.30739 -18.70706 -18.49813 -18.35722 -18.13673 -17.19109 -16.90582 -16.43370 -16.13427 -16.07853 -15.74287 -15.64565 -15.08974 -15.04356 -14.76459 -14.63405 -14.43148 -14.30639 -14.14367 -14.10075 -14.07443 -13.56653 -13.22808 -13.13785 -13.01168 -12.74501 -12.61313 -12.49405 -12.33177 -12.27433 -11.96399 -11.57257 -11.31130 -11.12699 -11.11693 -11.05613 -10.67769 -10.53292 -10.40205 -9.93280 -8.64558 -7.87228 -5.31620 -0.56609 -0.05219 1.35835 1.40175 1.46718 1.84902 2.18083 2.37424 2.46457 2.65193 3.19448 3.29522 3.34444 3.58181 3.68764 3.70549 3.88300 3.88463 3.98568 4.05553 4.11173 4.13379 4.27295 4.37481 4.51774 4.66537 4.71813 4.81170 4.82271 4.89865 4.94754 4.95962 5.08942 5.17564 5.24320 5.26128 5.42234 5.46351 5.50833 5.59660 5.70607 5.72562 6.38423 6.53968 6.62918 7.13745 7.28734 7.87793 8.38576 9.17567 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009369 B = 0.005903 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.748619 B = 4742.550840 C = 5824.189604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 H 0.076 0.924 4 C -0.114 4.114 5 C 0.134 3.866 6 N -0.598 5.598 7 C -0.246 4.246 8 H 0.073 0.927 9 C -0.051 4.051 10 N -0.932 5.932 11 Si 0.949 3.051 12 H -0.279 1.279 13 H -0.308 1.308 14 H -0.266 1.266 15 C 0.171 3.829 16 C 0.139 3.861 17 H 0.061 0.939 18 N -0.678 5.678 19 C 0.539 3.461 20 O -0.556 6.556 21 C -0.166 4.166 22 C -0.048 4.048 23 C -0.137 4.137 24 C 0.117 3.883 25 N -0.477 5.477 26 C 0.075 3.925 27 C 0.325 3.675 28 F -0.207 7.207 29 F -0.198 7.198 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.011 0.989 36 H 0.059 0.941 37 H 0.243 0.757 38 H 0.046 0.954 39 H -0.005 1.005 40 H 0.405 0.595 41 H 0.165 0.835 42 H 0.197 0.803 43 H 0.213 0.787 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.368 -9.070 -6.056 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 H 0.094 0.906 4 C -0.153 4.153 5 C 0.010 3.990 6 N -0.322 5.322 7 C -0.377 4.377 8 H 0.090 0.910 9 C -0.246 4.246 10 N -0.579 5.579 11 Si 0.778 3.222 12 H -0.206 1.206 13 H -0.235 1.235 14 H -0.191 1.191 15 C 0.044 3.956 16 C 0.033 3.967 17 H 0.079 0.921 18 N -0.329 5.329 19 C 0.325 3.675 20 O -0.436 6.436 21 C -0.171 4.171 22 C -0.074 4.074 23 C -0.156 4.156 24 C -0.041 4.041 25 N -0.186 5.186 26 C -0.064 4.064 27 C 0.271 3.729 28 F -0.188 7.188 29 F -0.179 7.179 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.029 0.971 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.013 0.987 40 H 0.243 0.757 41 H 0.182 0.818 42 H 0.214 0.786 43 H 0.229 0.771 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.127 -9.053 -4.427 20.740 hybrid contribution 1.481 0.153 -0.237 1.507 sum -16.646 -8.901 -4.665 19.444 Atomic orbital electron populations 1.21758 0.93001 1.02173 1.02242 1.21337 0.96888 0.99140 0.93307 0.90606 1.22013 0.95477 1.00492 0.97331 1.21169 0.93822 0.95916 0.88141 1.44153 1.48027 1.39437 1.00551 1.19396 1.08918 1.03442 1.05934 0.90958 1.25706 0.98896 0.99569 1.00472 1.70162 1.38349 1.30795 1.18547 0.85549 0.79190 0.81472 0.76006 1.20574 1.23535 1.19119 1.20849 0.90070 0.94906 0.89757 1.21478 0.95176 0.81288 0.98743 0.92079 1.45488 1.65914 1.13563 1.07958 1.18417 0.78227 0.86254 0.84610 1.90841 1.50952 1.70220 1.31565 1.20925 1.04402 0.95392 0.96391 1.22183 0.92308 0.96104 0.96791 1.22772 0.97326 0.93734 1.01796 1.23825 0.92137 1.01541 0.86569 1.67343 1.10936 1.06857 1.33457 1.21711 0.98292 0.92102 0.94263 1.20305 0.72492 0.83744 0.96374 1.93034 1.36164 1.92153 1.97485 1.92980 1.72217 1.56635 1.96106 0.93490 0.90304 0.92415 0.88783 0.91728 0.97069 0.92201 0.94802 0.93517 0.98706 0.75709 0.81769 0.78588 0.77089 0.83056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 9.05 71.98 0.65 -2.26 16 2 C -0.09 -2.51 2.48 -10.66 -0.03 -2.53 16 3 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 4 C -0.11 -3.05 5.23 30.77 0.16 -2.88 16 5 C 0.13 5.01 6.50 86.36 0.56 5.57 16 6 N -0.60 -28.85 2.91 -699.11 -2.04 -30.89 16 7 C -0.25 -13.31 9.58 84.04 0.81 -12.50 16 8 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 9 C -0.05 -2.96 4.92 84.86 0.42 -2.55 16 10 N -0.93 -58.90 11.20 21.65 0.24 -58.66 16 11 Si 0.95 47.32 29.59 68.60 2.03 49.35 16 12 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 13 H -0.31 -16.23 7.11 99.48 0.71 -15.52 16 14 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 15 C 0.17 8.63 4.90 86.36 0.42 9.05 16 16 C 0.14 5.37 2.24 45.07 0.10 5.47 16 17 H 0.06 2.56 7.58 -2.39 -0.02 2.55 16 18 N -0.68 -23.80 4.21 -445.05 -1.87 -25.68 16 19 C 0.54 21.49 7.55 86.78 0.66 22.15 16 20 O -0.56 -26.95 11.00 -3.88 -0.04 -26.99 16 21 C -0.17 -5.34 5.85 -19.99 -0.12 -5.46 16 22 C -0.05 -1.04 9.65 22.73 0.22 -0.82 16 23 C -0.14 -1.95 10.10 22.33 0.23 -1.73 16 24 C 0.12 1.90 11.17 84.71 0.95 2.85 16 25 N -0.48 -12.12 10.24 -182.84 -1.87 -14.00 16 26 C 0.08 2.42 6.31 42.89 0.27 2.69 16 27 C 0.33 11.38 5.02 71.24 0.36 11.74 16 28 F -0.21 -9.25 15.04 44.97 0.68 -8.57 16 29 F -0.20 -7.65 15.03 44.97 0.68 -6.98 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.17 7.54 -2.39 -0.02 1.15 16 33 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 1.59 6.41 -2.39 -0.02 1.57 16 35 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 36 H 0.06 2.14 7.93 -2.39 -0.02 2.12 16 37 H 0.24 15.27 8.31 -92.71 -0.77 14.50 16 38 H 0.05 2.86 6.06 -2.39 -0.01 2.84 16 39 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 40 H 0.40 11.60 4.75 -92.71 -0.44 11.16 16 41 H 0.16 2.74 6.52 -2.91 -0.02 2.72 16 42 H 0.20 0.87 8.06 -2.91 -0.02 0.85 16 43 H 0.21 1.43 8.06 -2.91 -0.02 1.41 16 44 H 0.15 4.00 8.11 -2.39 -0.02 3.98 16 Total: -1.00 -82.48 357.15 4.05 -78.43 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.60 Total: 15.18 kcal Atomic # 6 Polarization: 23.14 SS G_CDS: 5.65 Total: 28.79 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -5.54 Total: -129.22 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.04 Total: -26.99 kcal Atomic # 9 Polarization: -16.90 SS G_CDS: 1.35 Total: -15.55 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -82.48 4.05 -78.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967293147.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.722 kcal (2) G-P(sol) polarization free energy of solvation -82.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds