Wall clock time and date at job start Wed Apr 1 2020 00:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.45108 * 2 1 4 4 C 1.53033 * 109.46080 * 240.03322 * 2 1 3 5 5 C 1.53194 * 109.31362 * 178.61862 * 4 2 1 6 6 N 1.46924 * 108.77722 * 54.63094 * 5 4 2 7 7 C 1.36939 * 120.62668 * 126.41477 * 6 5 4 8 8 H 1.08002 * 119.99837 * 207.67188 * 7 6 5 9 9 C 1.38814 * 120.00348 * 27.67325 * 7 6 5 10 10 N 1.31612 * 119.99931 * 17.36426 * 9 7 6 11 11 Si 1.86801 * 120.00047 * 197.36621 * 9 7 6 12 12 H 1.48501 * 109.47104 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47119 * 119.99713 * 11 9 7 14 14 H 1.48497 * 109.46922 * 239.99906 * 11 9 7 15 15 C 1.46916 * 118.74104 * 306.39624 * 6 5 4 16 16 C 1.53046 * 109.45504 * 119.96466 * 2 1 3 17 17 H 1.08998 * 109.49400 * 61.43770 * 16 2 1 18 18 N 1.46492 * 109.52629 * 301.35100 * 16 2 1 19 19 C 1.34771 * 120.00065 * 155.14927 * 18 16 2 20 20 O 1.21554 * 120.00036 * 359.97438 * 19 18 16 21 21 C 1.47840 * 120.00168 * 180.02562 * 19 18 16 22 22 C 1.40027 * 120.56141 * 359.97438 * 21 19 18 23 23 C 1.38350 * 118.29166 * 179.97438 * 22 21 19 24 24 C 1.38348 * 119.30521 * 0.02562 * 23 22 21 25 25 N 1.31932 * 121.07630 * 0.02562 * 24 23 22 26 26 C 1.31690 * 121.88315 * 359.67951 * 25 24 23 27 27 C 1.50691 * 119.72121 * 180.29600 * 26 25 24 28 28 F 1.39900 * 109.47463 * 120.28844 * 27 26 25 29 29 F 1.39906 * 109.47215 * 240.29101 * 27 26 25 30 30 H 1.08999 * 109.47142 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47093 * 299.97184 * 1 2 3 32 32 H 1.09007 * 109.46855 * 59.96271 * 1 2 3 33 33 H 1.08999 * 109.50141 * 58.66605 * 4 2 1 34 34 H 1.09003 * 109.50007 * 298.56898 * 4 2 1 35 35 H 1.09007 * 109.58883 * 174.42340 * 5 4 2 36 36 H 1.08999 * 109.58260 * 294.69938 * 5 4 2 37 37 H 0.97000 * 120.00190 * 179.97438 * 10 9 7 38 38 H 1.08999 * 109.59316 * 173.39424 * 15 6 5 39 39 H 1.09007 * 109.58801 * 293.81953 * 15 6 5 40 40 H 0.97005 * 120.00215 * 335.14642 * 18 16 2 41 41 H 1.08004 * 120.84796 * 0.02562 * 22 21 19 42 42 H 1.08001 * 120.34963 * 180.02562 * 23 22 21 43 43 H 1.08003 * 119.46661 * 180.02562 * 24 23 22 44 44 H 1.09003 * 109.47055 * 0.28711 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2500 5 6 3.5714 -0.6886 -1.2641 6 7 4.0678 -1.2488 0.0001 7 6 4.9764 -2.2734 0.0001 8 1 5.0095 -2.9657 0.8284 9 6 5.8548 -2.4222 -1.0644 10 7 6.0606 -1.4204 -1.8927 11 14 6.7446 -4.0445 -1.3213 12 1 6.3420 -5.0032 -0.2612 13 1 6.3875 -4.5996 -2.6516 14 1 8.2111 -3.8204 -1.2559 15 6 3.5713 -0.6886 1.2643 16 6 2.0397 -0.7208 1.2502 17 1 1.6977 -1.7556 1.2383 18 7 1.5255 -0.0494 2.4463 19 6 1.4001 -0.7326 3.6012 20 8 1.7132 -1.9061 3.6502 21 6 0.8806 -0.0552 4.8082 22 6 0.5158 1.2960 4.7650 23 6 0.0348 1.8827 5.9219 24 6 -0.0691 1.1233 7.0736 25 7 0.2832 -0.1481 7.0851 26 6 0.7411 -0.7528 6.0086 27 6 1.1231 -2.2089 6.0750 28 9 0.3488 -2.9362 5.1646 29 9 2.4773 -2.3510 5.7535 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3633 0.5145 -0.8897 33 1 1.6573 -0.2207 -2.1398 34 1 1.6978 -1.7556 -1.2383 35 1 3.9417 -1.2846 -2.0983 36 1 3.9143 0.3406 -1.3699 37 1 6.6747 -1.5242 -2.6364 38 1 3.9416 -1.2845 2.0985 39 1 3.9143 0.3409 1.3674 40 1 1.2753 0.8870 2.4072 41 1 0.6069 1.8652 3.8517 42 1 -0.2567 2.9226 5.9259 43 1 -0.4447 1.5785 7.9781 44 1 0.9476 -2.5849 7.0830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967293148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:17 Heat of formation + Delta-G solvation = -72.444008 kcal Electronic energy + Delta-G solvation = -30634.868724 eV Core-core repulsion = 26223.730015 eV Total energy + Delta-G solvation = -4411.138709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.69564 -46.67475 -40.93270 -39.39222 -37.58974 -34.61337 -33.59025 -32.74371 -32.34430 -31.07621 -29.02294 -27.46626 -26.80919 -24.94032 -24.04954 -22.87707 -22.14674 -21.07825 -20.48065 -19.54881 -18.23137 -17.67404 -17.28975 -16.99480 -16.78508 -16.25155 -15.52680 -15.32746 -15.13000 -14.79879 -14.50910 -14.08068 -13.72993 -13.70638 -13.51332 -13.37710 -13.32407 -13.27044 -13.09345 -12.92487 -12.47928 -12.27212 -12.02121 -11.65770 -11.51568 -11.35120 -11.03227 -10.78688 -10.67244 -10.43206 -10.26571 -10.25033 -10.12293 -9.91282 -9.85243 -9.66953 -9.62796 -9.49236 -8.82765 -8.38360 -6.65728 -5.76064 -3.17728 0.18335 0.60296 2.74141 3.12469 3.20701 3.41732 3.47575 3.49683 3.54641 4.02657 4.21319 4.27303 4.36310 4.52973 4.60268 4.80725 4.92867 5.07730 5.13093 5.13800 5.26202 5.37607 5.42997 5.46846 5.53362 5.61184 5.86661 5.93404 5.97513 6.04638 6.15212 6.21041 6.27084 6.53070 6.62285 6.65074 6.72569 6.83190 6.99044 7.27038 7.35971 7.61875 7.65876 7.87224 8.30538 8.48575 9.24888 9.86950 10.42110 11.32777 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.003505 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.836148 B = 7987.188951 C = 9104.788712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.167 3.833 6 N -0.587 5.587 7 C -0.249 4.249 8 H 0.068 0.932 9 C 0.002 3.998 10 N -0.904 5.904 11 Si 0.901 3.099 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.291 1.291 15 C 0.142 3.858 16 C 0.134 3.866 17 H 0.090 0.910 18 N -0.711 5.711 19 C 0.545 3.455 20 O -0.499 6.499 21 C -0.140 4.140 22 C -0.048 4.048 23 C -0.159 4.159 24 C 0.116 3.884 25 N -0.463 5.463 26 C 0.100 3.900 27 C 0.337 3.663 28 F -0.182 7.182 29 F -0.178 7.178 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.018 0.982 37 H 0.252 0.748 38 H 0.060 0.940 39 H 0.016 0.984 40 H 0.391 0.609 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.169 0.831 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.061 9.594 14.418 23.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.173 4.173 5 C 0.041 3.959 6 N -0.309 5.309 7 C -0.378 4.378 8 H 0.086 0.914 9 C -0.196 4.196 10 N -0.549 5.549 11 Si 0.731 3.269 12 H -0.201 1.201 13 H -0.216 1.216 14 H -0.218 1.218 15 C 0.014 3.986 16 C 0.029 3.971 17 H 0.108 0.892 18 N -0.362 5.362 19 C 0.329 3.671 20 O -0.373 6.373 21 C -0.145 4.145 22 C -0.074 4.074 23 C -0.178 4.178 24 C -0.041 4.041 25 N -0.171 5.171 26 C -0.040 4.040 27 C 0.282 3.718 28 F -0.163 7.163 29 F -0.159 7.159 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.036 0.964 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.034 0.966 40 H 0.225 0.775 41 H 0.164 0.836 42 H 0.166 0.834 43 H 0.186 0.814 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.747 8.200 15.033 23.264 hybrid contribution 0.436 0.452 -1.074 1.244 sum -15.311 8.651 13.960 22.453 Atomic orbital electron populations 1.21858 0.96012 1.01680 1.00592 1.21312 0.94529 0.99637 0.95524 0.91520 1.22247 1.00702 0.99603 0.94741 1.20842 0.87277 0.97313 0.90424 1.43997 1.48045 1.39804 0.99068 1.19288 1.09579 1.02770 1.06172 0.91432 1.25007 0.97228 0.97529 0.99847 1.70045 1.37858 1.29001 1.18032 0.86223 0.79062 0.83779 0.77805 1.20092 1.21557 1.21756 1.21187 0.89933 0.96632 0.90833 1.21836 0.96819 0.97065 0.81382 0.89222 1.45961 1.65893 1.14018 1.10350 1.17902 0.79451 0.86900 0.82820 1.90935 1.47771 1.14867 1.83760 1.21035 1.02225 0.95352 0.95907 1.21859 0.93122 0.93063 0.99350 1.22250 1.00047 1.02091 0.93447 1.22980 0.93990 0.88776 0.98383 1.67340 1.09840 1.11688 1.28271 1.21933 0.96159 0.96964 0.88978 1.19788 0.74325 0.85523 0.92135 1.93054 1.74681 1.77988 1.70559 1.93086 1.32551 1.95936 1.94372 0.92806 0.93612 0.92914 0.92693 0.92338 0.89207 0.96374 0.93757 0.92169 0.96606 0.77467 0.83644 0.83405 0.81428 0.86206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.02 37.16 0.34 -1.49 16 2 C -0.09 -1.42 2.27 -90.58 -0.21 -1.62 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.13 -2.45 5.36 -26.61 -0.14 -2.59 16 5 C 0.17 3.92 5.31 -3.71 -0.02 3.90 16 6 N -0.59 -14.94 2.99 -172.32 -0.52 -15.46 16 7 C -0.25 -7.06 9.59 -15.06 -0.14 -7.21 16 8 H 0.07 1.95 7.89 -52.49 -0.41 1.54 16 9 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 10 N -0.90 -26.40 11.19 55.49 0.62 -25.78 16 11 Si 0.90 22.32 29.59 -169.99 -5.03 17.30 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 C 0.14 3.10 6.09 -3.71 -0.02 3.08 16 16 C 0.13 2.37 2.06 -67.81 -0.14 2.23 16 17 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 18 N -0.71 -10.05 4.33 -54.63 -0.24 -10.29 16 19 C 0.55 8.59 7.55 -12.33 -0.09 8.50 16 20 O -0.50 -9.89 11.00 5.32 0.06 -9.83 16 21 C -0.14 -1.75 5.85 -104.82 -0.61 -2.36 16 22 C -0.05 -0.40 9.65 -38.87 -0.37 -0.77 16 23 C -0.16 -1.00 10.10 -39.50 -0.40 -1.40 16 24 C 0.12 0.85 11.17 -17.47 -0.20 0.66 16 25 N -0.46 -4.97 10.24 -9.15 -0.09 -5.07 16 26 C 0.10 1.28 6.31 -82.18 -0.52 0.76 16 27 C 0.34 4.68 5.02 36.00 0.18 4.86 16 28 F -0.18 -2.96 15.03 2.25 0.03 -2.92 16 29 F -0.18 -3.04 15.03 2.25 0.03 -3.01 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.50 7.35 -51.93 -0.38 0.11 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 2.38 6.04 -51.93 -0.31 2.06 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.06 1.44 7.93 -51.93 -0.41 1.02 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.39 4.13 6.41 -40.82 -0.26 3.87 16 41 H 0.15 0.84 6.52 -52.48 -0.34 0.50 16 42 H 0.15 0.42 8.06 -52.49 -0.42 -0.01 16 43 H 0.17 0.63 8.06 -52.48 -0.42 0.21 16 44 H 0.12 1.23 8.11 -51.93 -0.42 0.81 16 LS Contribution 360.22 15.07 5.43 5.43 Total: -1.00 -34.48 360.22 -8.02 -42.50 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.88 Total: 0.61 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -2.44 Total: 6.52 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.23 Total: -56.60 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.06 Total: -9.83 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 0.07 Total: -5.93 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.48 -8.02 -42.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967293148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.945 kcal (2) G-P(sol) polarization free energy of solvation -34.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds