Wall clock time and date at job start Wed Apr 1 2020 00:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.45108 * 2 1 4 4 C 1.53033 * 109.46080 * 240.03322 * 2 1 3 5 5 C 1.53194 * 109.31362 * 178.61862 * 4 2 1 6 6 N 1.46924 * 108.77722 * 54.63094 * 5 4 2 7 7 C 1.36939 * 120.62668 * 126.41477 * 6 5 4 8 8 H 1.08002 * 119.99837 * 207.67188 * 7 6 5 9 9 C 1.38814 * 120.00348 * 27.67325 * 7 6 5 10 10 N 1.31612 * 119.99931 * 17.36426 * 9 7 6 11 11 Si 1.86801 * 120.00047 * 197.36621 * 9 7 6 12 12 H 1.48501 * 109.47104 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47119 * 119.99713 * 11 9 7 14 14 H 1.48497 * 109.46922 * 239.99906 * 11 9 7 15 15 C 1.46916 * 118.74104 * 306.39624 * 6 5 4 16 16 C 1.53046 * 109.45504 * 119.96466 * 2 1 3 17 17 H 1.08998 * 109.49400 * 61.43770 * 16 2 1 18 18 N 1.46492 * 109.52629 * 301.35100 * 16 2 1 19 19 C 1.34771 * 120.00065 * 155.14927 * 18 16 2 20 20 O 1.21554 * 120.00036 * 359.97438 * 19 18 16 21 21 C 1.47840 * 120.00168 * 180.02562 * 19 18 16 22 22 C 1.40027 * 120.56141 * 359.97438 * 21 19 18 23 23 C 1.38350 * 118.29166 * 179.97438 * 22 21 19 24 24 C 1.38348 * 119.30521 * 0.02562 * 23 22 21 25 25 N 1.31932 * 121.07630 * 0.02562 * 24 23 22 26 26 C 1.31690 * 121.88315 * 359.67951 * 25 24 23 27 27 C 1.50691 * 119.72121 * 180.29600 * 26 25 24 28 28 F 1.39900 * 109.47463 * 120.28844 * 27 26 25 29 29 F 1.39906 * 109.47215 * 240.29101 * 27 26 25 30 30 H 1.08999 * 109.47142 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47093 * 299.97184 * 1 2 3 32 32 H 1.09007 * 109.46855 * 59.96271 * 1 2 3 33 33 H 1.08999 * 109.50141 * 58.66605 * 4 2 1 34 34 H 1.09003 * 109.50007 * 298.56898 * 4 2 1 35 35 H 1.09007 * 109.58883 * 174.42340 * 5 4 2 36 36 H 1.08999 * 109.58260 * 294.69938 * 5 4 2 37 37 H 0.97000 * 120.00190 * 179.97438 * 10 9 7 38 38 H 1.08999 * 109.59316 * 173.39424 * 15 6 5 39 39 H 1.09007 * 109.58801 * 293.81953 * 15 6 5 40 40 H 0.97005 * 120.00215 * 335.14642 * 18 16 2 41 41 H 1.08004 * 120.84796 * 0.02562 * 22 21 19 42 42 H 1.08001 * 120.34963 * 180.02562 * 23 22 21 43 43 H 1.08003 * 119.46661 * 180.02562 * 24 23 22 44 44 H 1.09003 * 109.47055 * 0.28711 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2500 5 6 3.5714 -0.6886 -1.2641 6 7 4.0678 -1.2488 0.0001 7 6 4.9764 -2.2734 0.0001 8 1 5.0095 -2.9657 0.8284 9 6 5.8548 -2.4222 -1.0644 10 7 6.0606 -1.4204 -1.8927 11 14 6.7446 -4.0445 -1.3213 12 1 6.3420 -5.0032 -0.2612 13 1 6.3875 -4.5996 -2.6516 14 1 8.2111 -3.8204 -1.2559 15 6 3.5713 -0.6886 1.2643 16 6 2.0397 -0.7208 1.2502 17 1 1.6977 -1.7556 1.2383 18 7 1.5255 -0.0494 2.4463 19 6 1.4001 -0.7326 3.6012 20 8 1.7132 -1.9061 3.6502 21 6 0.8806 -0.0552 4.8082 22 6 0.5158 1.2960 4.7650 23 6 0.0348 1.8827 5.9219 24 6 -0.0691 1.1233 7.0736 25 7 0.2832 -0.1481 7.0851 26 6 0.7411 -0.7528 6.0086 27 6 1.1231 -2.2089 6.0750 28 9 0.3488 -2.9362 5.1646 29 9 2.4773 -2.3510 5.7535 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3633 0.5145 -0.8897 33 1 1.6573 -0.2207 -2.1398 34 1 1.6978 -1.7556 -1.2383 35 1 3.9417 -1.2846 -2.0983 36 1 3.9143 0.3406 -1.3699 37 1 6.6747 -1.5242 -2.6364 38 1 3.9416 -1.2845 2.0985 39 1 3.9143 0.3409 1.3674 40 1 1.2753 0.8870 2.4072 41 1 0.6069 1.8652 3.8517 42 1 -0.2567 2.9226 5.9259 43 1 -0.4447 1.5785 7.9781 44 1 0.9476 -2.5849 7.0830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967293148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:16 Heat of formation + Delta-G solvation = -95.913805 kcal Electronic energy + Delta-G solvation = -30635.886450 eV Core-core repulsion = 26223.730015 eV Total energy + Delta-G solvation = -4412.156436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.84865 -47.86388 -41.82199 -40.57145 -39.07307 -36.26545 -34.83008 -33.74146 -33.19996 -33.02873 -30.55085 -29.00857 -27.85973 -26.06174 -25.59248 -24.10185 -23.24599 -22.70004 -21.74749 -21.06902 -19.21001 -18.76966 -18.56775 -18.29083 -18.14164 -17.41406 -16.93700 -16.43853 -16.31212 -16.10740 -15.78848 -15.48196 -15.37503 -15.13921 -14.70906 -14.64321 -14.53731 -14.24343 -14.17963 -14.14086 -14.08686 -13.56277 -13.26208 -13.19214 -13.15688 -12.77323 -12.67618 -12.34464 -12.31367 -12.03983 -11.96743 -11.68419 -11.45477 -11.27987 -11.13384 -11.12063 -10.67549 -10.62266 -10.42022 -10.11487 -8.71696 -7.93111 -5.37983 -0.59467 -0.04434 1.41237 1.43003 1.54995 1.77886 1.96524 2.36289 2.48239 2.61096 3.20818 3.21546 3.31973 3.49347 3.69092 3.70824 3.77769 3.88641 3.99516 4.05008 4.09499 4.12327 4.26427 4.37454 4.43215 4.50592 4.64735 4.74547 4.81996 4.91174 4.93620 4.95380 5.02158 5.08053 5.16199 5.20534 5.40806 5.43335 5.45500 5.53939 5.61216 5.75984 6.34567 6.45907 6.60505 7.10744 7.17795 7.80283 8.29586 9.12599 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.003505 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.836148 B = 7987.188951 C = 9104.788712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 H 0.085 0.915 4 C -0.123 4.123 5 C 0.172 3.828 6 N -0.606 5.606 7 C -0.268 4.268 8 H 0.049 0.951 9 C -0.041 4.041 10 N -0.927 5.927 11 Si 0.963 3.037 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.286 1.286 15 C 0.145 3.855 16 C 0.153 3.847 17 H 0.054 0.946 18 N -0.695 5.695 19 C 0.541 3.459 20 O -0.551 6.551 21 C -0.166 4.166 22 C -0.043 4.043 23 C -0.137 4.137 24 C 0.118 3.882 25 N -0.479 5.479 26 C 0.080 3.920 27 C 0.323 3.677 28 F -0.202 7.202 29 F -0.204 7.204 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.007 0.993 37 H 0.253 0.747 38 H 0.025 0.975 39 H 0.022 0.978 40 H 0.413 0.587 41 H 0.175 0.825 42 H 0.197 0.803 43 H 0.209 0.791 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.584 12.921 15.392 27.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.101 4.101 3 H 0.103 0.897 4 C -0.163 4.163 5 C 0.047 3.953 6 N -0.330 5.330 7 C -0.398 4.398 8 H 0.067 0.933 9 C -0.237 4.237 10 N -0.573 5.573 11 Si 0.791 3.209 12 H -0.202 1.202 13 H -0.208 1.208 14 H -0.213 1.213 15 C 0.018 3.982 16 C 0.047 3.953 17 H 0.073 0.927 18 N -0.348 5.348 19 C 0.327 3.673 20 O -0.429 6.429 21 C -0.172 4.172 22 C -0.069 4.069 23 C -0.156 4.156 24 C -0.039 4.039 25 N -0.188 5.188 26 C -0.059 4.059 27 C 0.268 3.732 28 F -0.183 7.183 29 F -0.186 7.186 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.025 0.975 37 H 0.062 0.938 38 H 0.044 0.956 39 H 0.040 0.960 40 H 0.251 0.749 41 H 0.193 0.807 42 H 0.214 0.786 43 H 0.226 0.774 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -18.306 11.578 16.020 26.941 hybrid contribution 1.208 -0.479 -1.236 1.793 sum -17.099 11.099 14.784 25.181 Atomic orbital electron populations 1.21777 0.92824 1.01626 1.02983 1.21239 0.96987 0.99472 0.92368 0.89663 1.22085 0.96654 0.99777 0.97745 1.20717 0.90684 0.95483 0.88383 1.44208 1.48187 1.39730 1.00865 1.19397 1.10641 1.03698 1.06109 0.93323 1.25668 0.98037 1.00434 0.99554 1.70159 1.38388 1.30418 1.18291 0.85283 0.77898 0.80070 0.77668 1.20199 1.20788 1.21292 1.21201 0.92947 0.95699 0.88321 1.21263 0.93594 0.96331 0.84153 0.92733 1.45642 1.65321 1.14886 1.08953 1.18529 0.78384 0.86480 0.83908 1.90912 1.49948 1.17361 1.84649 1.20806 1.04912 0.97339 0.94139 1.22250 0.91935 0.91121 1.01589 1.22783 0.97220 1.03914 0.91654 1.23829 0.92001 0.87533 1.00495 1.67358 1.10516 1.13595 1.27354 1.21666 0.97967 0.96234 0.90045 1.20332 0.72821 0.87263 0.92744 1.92994 1.75037 1.78741 1.71528 1.93017 1.34666 1.96233 1.94652 0.94143 0.91135 0.90605 0.89636 0.93790 0.92729 0.97501 0.93794 0.95606 0.95981 0.74870 0.80741 0.78579 0.77413 0.83210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.02 71.98 0.65 -2.31 16 2 C -0.08 -2.40 2.27 -10.77 -0.02 -2.43 16 3 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 4 C -0.12 -4.46 5.36 30.67 0.16 -4.29 16 5 C 0.17 8.32 5.31 86.36 0.46 8.78 16 6 N -0.61 -32.36 2.99 -699.09 -2.09 -34.46 16 7 C -0.27 -16.06 9.59 84.03 0.81 -15.26 16 8 H 0.05 3.02 7.89 -2.91 -0.02 3.00 16 9 C -0.04 -2.40 4.91 84.86 0.42 -1.98 16 10 N -0.93 -55.69 11.19 21.65 0.24 -55.44 16 11 Si 0.96 47.41 29.59 68.60 2.03 49.44 16 12 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 13 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 14 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 15 C 0.15 6.65 6.09 86.37 0.53 7.18 16 16 C 0.15 5.50 2.06 45.08 0.09 5.59 16 17 H 0.05 2.38 7.58 -2.39 -0.02 2.36 16 18 N -0.70 -19.12 4.33 -445.05 -1.92 -21.05 16 19 C 0.54 17.39 7.55 86.79 0.66 18.04 16 20 O -0.55 -23.41 11.00 -3.89 -0.04 -23.46 16 21 C -0.17 -3.99 5.85 -19.99 -0.12 -4.11 16 22 C -0.04 -0.55 9.65 22.73 0.22 -0.34 16 23 C -0.14 -0.95 10.10 22.32 0.23 -0.73 16 24 C 0.12 1.21 11.17 84.70 0.95 2.16 16 25 N -0.48 -9.30 10.24 -182.85 -1.87 -11.17 16 26 C 0.08 2.03 6.31 42.89 0.27 2.30 16 27 C 0.32 9.46 5.02 71.23 0.36 9.81 16 28 F -0.20 -7.04 15.03 44.97 0.68 -6.37 16 29 F -0.20 -7.55 15.03 44.97 0.68 -6.87 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.22 7.35 -2.39 -0.02 1.20 16 32 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.05 3.00 6.04 -2.38 -0.01 2.99 16 36 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 38 H 0.03 1.32 7.93 -2.39 -0.02 1.30 16 39 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.41 7.49 6.41 -92.70 -0.59 6.90 16 41 H 0.18 1.09 6.52 -2.91 -0.02 1.07 16 42 H 0.20 -0.45 8.06 -2.91 -0.02 -0.47 16 43 H 0.21 0.35 8.06 -2.91 -0.02 0.32 16 44 H 0.15 3.22 8.11 -2.39 -0.02 3.20 16 Total: -1.00 -83.69 360.22 3.78 -79.91 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.44 Total: 7.03 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: 5.65 Total: 22.43 kcal Atomic # 7 Polarization: -116.46 SS G_CDS: -5.65 Total: -122.11 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.04 Total: -23.46 kcal Atomic # 9 Polarization: -14.59 SS G_CDS: 1.35 Total: -13.24 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -83.69 3.78 -79.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967293148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.005 kcal (2) G-P(sol) polarization free energy of solvation -83.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds