Wall clock time and date at job start Wed Apr 1 2020 00:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.58184 * 2 1 4 4 C 1.53188 * 109.58572 * 120.28526 * 2 1 3 5 5 H 1.09004 * 109.49866 * 54.61403 * 4 2 1 6 6 N 1.46493 * 109.52419 * 294.53374 * 4 2 1 7 7 C 1.34776 * 119.99866 * 155.14723 * 6 4 2 8 8 O 1.21554 * 120.00129 * 359.97438 * 7 6 4 9 9 C 1.47847 * 120.00075 * 179.97438 * 7 6 4 10 10 C 1.40024 * 120.55815 * 180.02562 * 9 7 6 11 11 C 1.38353 * 118.28667 * 180.02562 * 10 9 7 12 12 C 1.38354 * 119.30451 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.46162 * 180.02562 * 12 11 10 14 14 F 1.39907 * 109.47194 * 210.00341 * 13 12 11 15 15 F 1.39901 * 109.47013 * 330.00003 * 13 12 11 16 16 N 1.31921 * 121.07888 * 359.97438 * 12 11 10 17 17 C 1.31702 * 121.88292 * 359.74346 * 16 12 11 18 18 C 1.53037 * 109.30880 * 174.56444 * 4 2 1 19 19 C 1.53041 * 109.53145 * 298.64253 * 18 4 2 20 20 C 1.53163 * 109.32717 * 61.36971 * 19 18 4 21 21 N 1.46926 * 108.76987 * 305.35963 * 20 19 18 22 22 C 1.36929 * 120.63211 * 233.62936 * 21 20 19 23 23 H 1.07997 * 120.00376 * 150.16817 * 22 21 20 24 24 C 1.38814 * 119.99888 * 330.16339 * 22 21 20 25 25 N 1.31627 * 119.99987 * 344.48917 * 24 22 21 26 26 Si 1.86799 * 119.99883 * 164.48309 * 24 22 21 27 27 H 1.48505 * 109.47234 * 60.00768 * 26 24 22 28 28 H 1.48508 * 109.47069 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47489 * 299.99968 * 26 24 22 30 30 H 1.08995 * 109.46951 * 299.71086 * 1 2 3 31 31 H 1.09000 * 109.47301 * 59.71485 * 1 2 3 32 32 H 1.09001 * 109.46761 * 179.71287 * 1 2 3 33 33 H 0.97002 * 120.00207 * 335.14549 * 6 4 2 34 34 H 1.07999 * 120.85730 * 0.02562 * 10 9 7 35 35 H 1.08008 * 120.34942 * 179.97438 * 11 10 9 36 36 H 1.08994 * 109.47517 * 89.99783 * 13 12 11 37 37 H 1.07990 * 119.72180 * 180.26730 * 17 16 12 38 38 H 1.08996 * 109.46131 * 58.66218 * 18 4 2 39 39 H 1.09009 * 109.45855 * 178.63244 * 18 4 2 40 40 H 1.08990 * 109.50082 * 181.31530 * 19 18 4 41 41 H 1.09003 * 109.49305 * 301.40803 * 19 18 4 42 42 H 1.08994 * 109.58924 * 185.57095 * 20 19 18 43 43 H 1.09007 * 109.70277 * 65.21403 * 20 19 18 44 44 H 0.96996 * 119.99377 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 1.2463 5 1 1.6049 -1.7247 1.2921 6 7 1.6676 0.0273 2.4440 7 6 1.5472 -0.6042 3.6285 8 8 1.7503 -1.8004 3.7030 9 6 1.1683 0.1579 4.8374 10 6 1.0405 -0.4863 6.0741 11 6 0.6831 0.2722 7.1746 12 6 0.4661 1.6298 7.0198 13 6 0.0773 2.4595 8.2162 14 9 -0.7191 3.5322 7.8010 15 9 -0.6404 1.6680 9.1192 16 7 0.5950 2.2101 5.8421 17 6 0.9384 1.5322 4.7664 18 6 3.5678 -0.8433 1.1728 19 6 3.9601 -1.6606 -0.0602 20 6 3.4685 -0.9435 -1.3212 21 7 2.0254 -0.6990 -1.1937 22 6 1.1585 -1.1150 -2.1686 23 1 0.1448 -1.3840 -1.9109 24 6 1.5826 -1.1910 -3.4881 25 7 2.6924 -0.5879 -3.8585 26 14 0.5783 -2.1491 -4.7382 27 1 -0.7835 -1.5643 -4.8323 28 1 1.2410 -2.0774 -6.0653 29 1 0.4794 -3.5679 -4.3111 30 1 -0.3633 0.5093 0.8925 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3633 -1.0277 -0.0052 33 1 1.5052 0.9817 2.3845 34 1 1.2163 -1.5479 6.1665 35 1 0.5747 -0.1906 8.1445 36 1 0.9757 2.8406 8.7016 37 1 1.0380 2.0435 3.8204 38 1 4.0045 0.1528 1.1022 39 1 3.9381 -1.3394 2.0701 40 1 5.0446 -1.7624 -0.0993 41 1 3.5034 -2.6487 -0.0021 42 1 3.6576 -1.5682 -2.1941 43 1 3.9918 0.0064 -1.4313 44 1 2.9888 -0.6413 -4.7805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993408667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:39 Heat of formation + Delta-G solvation = -79.000187 kcal Electronic energy + Delta-G solvation = -29265.249291 eV Core-core repulsion = 24853.826285 eV Total energy + Delta-G solvation = -4411.423006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -49.43160 -47.43180 -41.01393 -39.48287 -37.67891 -34.54976 -33.22998 -32.88208 -32.40519 -31.63802 -29.40956 -27.57072 -26.17128 -25.05320 -24.30334 -23.51101 -22.06218 -20.78493 -20.56267 -19.59089 -18.46919 -17.99733 -17.93912 -17.51707 -16.73453 -16.30732 -15.56228 -15.46024 -15.19627 -14.89467 -14.63272 -14.24865 -14.18638 -13.85101 -13.80410 -13.76226 -13.55123 -13.41046 -13.33639 -13.05582 -12.80784 -12.60859 -11.78858 -11.78449 -11.59319 -11.18141 -10.96004 -10.79815 -10.65236 -10.47240 -10.42601 -10.36312 -10.18154 -10.09463 -9.92382 -9.73507 -9.69668 -9.44381 -8.81937 -8.49689 -6.72000 -5.83871 -3.28867 0.03313 0.69889 2.54589 2.87346 3.07752 3.35859 3.39865 3.41851 3.43531 3.60203 3.78986 4.24286 4.31799 4.38924 4.44207 4.56218 4.64375 4.76363 5.04263 5.22828 5.31332 5.42306 5.45739 5.52049 5.60948 5.70845 5.88370 5.93730 5.99540 6.14119 6.25786 6.33810 6.44946 6.51077 6.62410 6.68719 6.76981 6.92356 6.99304 7.20449 7.34254 7.51479 7.61799 7.77606 8.15074 8.40414 9.15584 9.77915 10.34257 11.24885 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.023874 B = 0.002282 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.556915 B =12266.695485 C =12685.905714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.167 3.833 3 H 0.029 0.971 4 C 0.129 3.871 5 H 0.089 0.911 6 N -0.708 5.708 7 C 0.557 3.443 8 O -0.531 6.531 9 C -0.161 4.161 10 C -0.017 4.017 11 C -0.146 4.146 12 C 0.063 3.937 13 C 0.327 3.673 14 F -0.185 7.185 15 F -0.194 7.194 16 N -0.457 5.457 17 C 0.137 3.863 18 C -0.117 4.117 19 C -0.140 4.140 20 C 0.169 3.831 21 N -0.581 5.581 22 C -0.255 4.255 23 H 0.070 0.930 24 C 0.006 3.994 25 N -0.901 5.901 26 Si 0.902 3.098 27 H -0.282 1.282 28 H -0.290 1.290 29 H -0.283 1.283 30 H 0.038 0.962 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.396 0.604 34 H 0.156 0.844 35 H 0.152 0.848 36 H 0.132 0.868 37 H 0.169 0.831 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.020 0.980 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.213 5.157 22.640 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.060 3.940 3 H 0.046 0.954 4 C 0.024 3.976 5 H 0.107 0.893 6 N -0.358 5.358 7 C 0.342 3.658 8 O -0.408 6.408 9 C -0.166 4.166 10 C -0.043 4.043 11 C -0.166 4.166 12 C -0.076 4.076 13 C 0.273 3.727 14 F -0.166 7.166 15 F -0.175 7.175 16 N -0.165 5.165 17 C -0.022 4.022 18 C -0.156 4.156 19 C -0.180 4.180 20 C 0.044 3.956 21 N -0.304 5.304 22 C -0.384 4.384 23 H 0.087 0.913 24 C -0.193 4.193 25 N -0.545 5.545 26 Si 0.732 3.268 27 H -0.208 1.208 28 H -0.216 1.216 29 H -0.210 1.210 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.231 0.769 34 H 0.174 0.826 35 H 0.169 0.831 36 H 0.149 0.851 37 H 0.186 0.814 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.038 0.962 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.193 5.214 22.399 23.029 hybrid contribution -0.438 -0.855 -0.657 1.163 sum -1.631 4.359 21.743 22.236 Atomic orbital electron populations 1.21830 0.95584 1.01798 1.00312 1.20559 0.93279 0.93603 0.86604 0.95381 1.21909 0.95320 0.96950 0.83393 0.89288 1.46098 1.69072 1.12334 1.08297 1.17923 0.77941 0.87060 0.82865 1.90799 1.50298 1.14303 1.85442 1.21336 1.03857 0.95621 0.95835 1.21785 0.90797 1.01557 0.90182 1.21863 1.00193 0.93527 1.01038 1.21853 0.99061 0.92666 0.93994 1.20096 0.89250 0.78671 0.84693 1.93053 1.76542 1.56001 1.90966 1.93027 1.80989 1.75185 1.68278 1.67296 1.11326 1.39793 0.98064 1.23039 0.92092 0.90130 0.96906 1.21767 0.95101 1.00214 0.98477 1.22177 0.99309 0.99715 0.96776 1.20831 0.83082 0.97264 0.94442 1.44011 1.03110 1.65061 1.18214 1.19105 0.95295 1.38031 0.86007 0.91254 1.25090 0.97889 0.99348 0.96978 1.70017 1.24090 1.43472 1.16942 0.86378 0.79575 0.80279 0.80567 1.20845 1.21632 1.20958 0.94339 0.91612 0.92601 0.76931 0.82594 0.83074 0.85059 0.81392 0.92625 0.93142 0.92907 0.92453 0.89443 0.96180 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.85 37.16 0.29 -2.15 16 2 C 0.17 3.20 3.03 -67.60 -0.20 2.99 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 4 C 0.13 2.20 1.99 -67.82 -0.14 2.06 16 5 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 6 N -0.71 -9.42 4.52 -54.64 -0.25 -9.67 16 7 C 0.56 7.69 7.75 -12.33 -0.10 7.59 16 8 O -0.53 -9.22 16.09 5.32 0.09 -9.13 16 9 C -0.16 -1.75 5.89 -104.82 -0.62 -2.37 16 10 C -0.02 -0.16 9.72 -38.87 -0.38 -0.54 16 11 C -0.15 -1.14 9.42 -39.50 -0.37 -1.52 16 12 C 0.06 0.56 6.58 -82.51 -0.54 0.02 16 13 C 0.33 2.32 5.72 36.01 0.21 2.53 16 14 F -0.18 -1.81 17.05 2.25 0.04 -1.77 16 15 F -0.19 -1.49 16.45 2.25 0.04 -1.45 16 16 N -0.46 -4.75 9.94 -9.14 -0.09 -4.84 16 17 C 0.14 1.34 10.71 -17.13 -0.18 1.15 16 18 C -0.12 -1.99 5.46 -26.69 -0.15 -2.13 16 19 C -0.14 -2.65 6.08 -26.63 -0.16 -2.81 16 20 C 0.17 3.87 5.28 -3.73 -0.02 3.85 16 21 N -0.58 -13.67 2.99 -164.79 -0.49 -14.16 16 22 C -0.25 -6.62 8.58 -15.06 -0.13 -6.74 16 23 H 0.07 1.76 6.24 -52.49 -0.33 1.44 16 24 C 0.01 0.16 4.94 -17.43 -0.09 0.07 16 25 N -0.90 -25.28 11.23 55.49 0.62 -24.66 16 26 Si 0.90 21.20 29.58 -169.99 -5.03 16.17 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 30 H 0.04 0.55 7.78 -51.93 -0.40 0.15 16 31 H 0.06 1.26 7.67 -51.93 -0.40 0.86 16 32 H 0.05 1.05 7.41 -51.93 -0.38 0.66 16 33 H 0.40 4.17 6.67 -40.82 -0.27 3.90 16 34 H 0.16 1.38 7.74 -52.49 -0.41 0.98 16 35 H 0.15 0.80 7.59 -52.48 -0.40 0.40 16 36 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.17 1.26 6.42 -52.49 -0.34 0.92 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.09 2.25 6.15 -51.93 -0.32 1.93 16 43 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 44 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 364.70 15.07 5.50 5.50 Total: -1.00 -31.50 364.70 -7.89 -39.39 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -5.73 Total: 2.62 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -2.57 Total: 2.01 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.21 Total: -53.33 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.08 Total: -3.22 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.50 -7.89 -39.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993408667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.610 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds