Wall clock time and date at job start Wed Apr 1 2020 00:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.58184 * 2 1 4 4 C 1.53188 * 109.58572 * 120.28526 * 2 1 3 5 5 H 1.09004 * 109.49866 * 54.61403 * 4 2 1 6 6 N 1.46493 * 109.52419 * 294.53374 * 4 2 1 7 7 C 1.34776 * 119.99866 * 155.14723 * 6 4 2 8 8 O 1.21554 * 120.00129 * 359.97438 * 7 6 4 9 9 C 1.47847 * 120.00075 * 179.97438 * 7 6 4 10 10 C 1.40024 * 120.55815 * 180.02562 * 9 7 6 11 11 C 1.38353 * 118.28667 * 180.02562 * 10 9 7 12 12 C 1.38354 * 119.30451 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.46162 * 180.02562 * 12 11 10 14 14 F 1.39907 * 109.47194 * 210.00341 * 13 12 11 15 15 F 1.39901 * 109.47013 * 330.00003 * 13 12 11 16 16 N 1.31921 * 121.07888 * 359.97438 * 12 11 10 17 17 C 1.31702 * 121.88292 * 359.74346 * 16 12 11 18 18 C 1.53037 * 109.30880 * 174.56444 * 4 2 1 19 19 C 1.53041 * 109.53145 * 298.64253 * 18 4 2 20 20 C 1.53163 * 109.32717 * 61.36971 * 19 18 4 21 21 N 1.46926 * 108.76987 * 305.35963 * 20 19 18 22 22 C 1.36929 * 120.63211 * 233.62936 * 21 20 19 23 23 H 1.07997 * 120.00376 * 150.16817 * 22 21 20 24 24 C 1.38814 * 119.99888 * 330.16339 * 22 21 20 25 25 N 1.31627 * 119.99987 * 344.48917 * 24 22 21 26 26 Si 1.86799 * 119.99883 * 164.48309 * 24 22 21 27 27 H 1.48505 * 109.47234 * 60.00768 * 26 24 22 28 28 H 1.48508 * 109.47069 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47489 * 299.99968 * 26 24 22 30 30 H 1.08995 * 109.46951 * 299.71086 * 1 2 3 31 31 H 1.09000 * 109.47301 * 59.71485 * 1 2 3 32 32 H 1.09001 * 109.46761 * 179.71287 * 1 2 3 33 33 H 0.97002 * 120.00207 * 335.14549 * 6 4 2 34 34 H 1.07999 * 120.85730 * 0.02562 * 10 9 7 35 35 H 1.08008 * 120.34942 * 179.97438 * 11 10 9 36 36 H 1.08994 * 109.47517 * 89.99783 * 13 12 11 37 37 H 1.07990 * 119.72180 * 180.26730 * 17 16 12 38 38 H 1.08996 * 109.46131 * 58.66218 * 18 4 2 39 39 H 1.09009 * 109.45855 * 178.63244 * 18 4 2 40 40 H 1.08990 * 109.50082 * 181.31530 * 19 18 4 41 41 H 1.09003 * 109.49305 * 301.40803 * 19 18 4 42 42 H 1.08994 * 109.58924 * 185.57095 * 20 19 18 43 43 H 1.09007 * 109.70277 * 65.21403 * 20 19 18 44 44 H 0.96996 * 119.99377 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 1.2463 5 1 1.6049 -1.7247 1.2921 6 7 1.6676 0.0273 2.4440 7 6 1.5472 -0.6042 3.6285 8 8 1.7503 -1.8004 3.7030 9 6 1.1683 0.1579 4.8374 10 6 1.0405 -0.4863 6.0741 11 6 0.6831 0.2722 7.1746 12 6 0.4661 1.6298 7.0198 13 6 0.0773 2.4595 8.2162 14 9 -0.7191 3.5322 7.8010 15 9 -0.6404 1.6680 9.1192 16 7 0.5950 2.2101 5.8421 17 6 0.9384 1.5322 4.7664 18 6 3.5678 -0.8433 1.1728 19 6 3.9601 -1.6606 -0.0602 20 6 3.4685 -0.9435 -1.3212 21 7 2.0254 -0.6990 -1.1937 22 6 1.1585 -1.1150 -2.1686 23 1 0.1448 -1.3840 -1.9109 24 6 1.5826 -1.1910 -3.4881 25 7 2.6924 -0.5879 -3.8585 26 14 0.5783 -2.1491 -4.7382 27 1 -0.7835 -1.5643 -4.8323 28 1 1.2410 -2.0774 -6.0653 29 1 0.4794 -3.5679 -4.3111 30 1 -0.3633 0.5093 0.8925 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3633 -1.0277 -0.0052 33 1 1.5052 0.9817 2.3845 34 1 1.2163 -1.5479 6.1665 35 1 0.5747 -0.1906 8.1445 36 1 0.9757 2.8406 8.7016 37 1 1.0380 2.0435 3.8204 38 1 4.0045 0.1528 1.1022 39 1 3.9381 -1.3394 2.0701 40 1 5.0446 -1.7624 -0.0993 41 1 3.5034 -2.6487 -0.0021 42 1 3.6576 -1.5682 -2.1941 43 1 3.9918 0.0064 -1.4313 44 1 2.9888 -0.6413 -4.7805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993408667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:39 Heat of formation + Delta-G solvation = -98.456075 kcal Electronic energy + Delta-G solvation = -29266.092962 eV Core-core repulsion = 24853.826285 eV Total energy + Delta-G solvation = -4412.266677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.01493 -48.03654 -41.87585 -40.60660 -39.14665 -36.01169 -34.45388 -33.87693 -33.57015 -33.10661 -30.97338 -28.49831 -27.60844 -26.82416 -25.04997 -24.51124 -23.35686 -22.34570 -21.69763 -21.12558 -19.32098 -18.72473 -18.53571 -18.34437 -18.21044 -17.50494 -17.00956 -16.45623 -16.24374 -16.15961 -15.75768 -15.59830 -15.35223 -15.08993 -14.86924 -14.80437 -14.50523 -14.45530 -14.33966 -14.20726 -14.10819 -13.65130 -13.34314 -13.24820 -12.79505 -12.71989 -12.54380 -12.39253 -12.35717 -12.02908 -11.83999 -11.78570 -11.66819 -11.38151 -11.15392 -11.12440 -10.68118 -10.52081 -10.46609 -10.06073 -8.64396 -7.85657 -5.31723 -0.72090 0.01377 1.47095 1.49820 1.55333 1.62456 1.94941 2.28808 2.53213 2.58604 3.09373 3.19767 3.30195 3.48558 3.62091 3.65193 3.73454 3.85689 3.90616 4.00931 4.03012 4.14178 4.21157 4.36329 4.45277 4.51878 4.61795 4.72038 4.78770 4.87952 4.90800 4.91693 5.04117 5.13762 5.19303 5.24844 5.28144 5.43889 5.46905 5.58303 5.71217 5.77263 6.41560 6.43587 6.52043 7.08584 7.17381 7.87082 8.38405 9.21172 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.023874 B = 0.002282 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.556915 B =12266.695485 C =12685.905714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.164 3.836 3 H 0.037 0.963 4 C 0.147 3.853 5 H 0.062 0.938 6 N -0.698 5.698 7 C 0.563 3.437 8 O -0.570 6.570 9 C -0.175 4.175 10 C -0.019 4.019 11 C -0.137 4.137 12 C 0.060 3.940 13 C 0.326 3.674 14 F -0.202 7.202 15 F -0.197 7.197 16 N -0.476 5.476 17 C 0.141 3.859 18 C -0.110 4.110 19 C -0.129 4.129 20 C 0.175 3.825 21 N -0.600 5.600 22 C -0.254 4.254 23 H 0.071 0.929 24 C -0.047 4.047 25 N -0.932 5.932 26 Si 0.959 3.041 27 H -0.275 1.275 28 H -0.296 1.296 29 H -0.282 1.282 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.041 0.959 33 H 0.412 0.588 34 H 0.159 0.841 35 H 0.179 0.821 36 H 0.175 0.825 37 H 0.187 0.813 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.052 0.948 43 H 0.005 0.995 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.715 5.980 25.225 25.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.057 3.943 3 H 0.054 0.946 4 C 0.040 3.960 5 H 0.080 0.920 6 N -0.349 5.349 7 C 0.349 3.651 8 O -0.450 6.450 9 C -0.180 4.180 10 C -0.046 4.046 11 C -0.156 4.156 12 C -0.079 4.079 13 C 0.272 3.728 14 F -0.183 7.183 15 F -0.178 7.178 16 N -0.185 5.185 17 C -0.018 4.018 18 C -0.148 4.148 19 C -0.169 4.169 20 C 0.050 3.950 21 N -0.323 5.323 22 C -0.385 4.385 23 H 0.089 0.911 24 C -0.243 4.243 25 N -0.578 5.578 26 Si 0.788 3.212 27 H -0.201 1.201 28 H -0.222 1.222 29 H -0.209 1.209 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.250 0.750 34 H 0.176 0.824 35 H 0.197 0.803 36 H 0.192 0.808 37 H 0.204 0.796 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.023 0.977 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.719 6.070 25.024 25.808 hybrid contribution -0.309 -1.084 -1.333 1.746 sum -2.028 4.986 23.691 24.295 Atomic orbital electron populations 1.21751 0.94522 1.01130 1.01329 1.20723 0.94211 0.93630 0.85704 0.94591 1.21377 0.95092 0.95659 0.83838 0.91976 1.45834 1.68974 1.12918 1.07207 1.18270 0.76743 0.86636 0.83407 1.90783 1.52076 1.16140 1.86049 1.21074 1.06042 0.95972 0.94917 1.21941 0.90446 1.01936 0.90241 1.22094 0.98888 0.93004 1.01658 1.22278 0.98063 0.93360 0.94161 1.20530 0.90163 0.77934 0.84217 1.93019 1.77241 1.56830 1.91215 1.93022 1.81279 1.75301 1.68187 1.67361 1.12170 1.40253 0.98689 1.23269 0.91248 0.89603 0.97636 1.21692 0.95074 1.00535 0.97512 1.22010 1.00370 0.98769 0.95757 1.20631 0.83157 0.96187 0.95044 1.44246 1.03102 1.65892 1.19104 1.19385 0.95601 1.36853 0.86612 0.91107 1.25753 0.99087 1.00713 0.98702 1.70155 1.25682 1.45218 1.16757 0.85468 0.78484 0.79003 0.78245 1.20083 1.22181 1.20870 0.90638 0.93257 0.94034 0.75026 0.82364 0.80337 0.80824 0.79617 0.91337 0.92384 0.90875 0.93675 0.92908 0.97656 0.94218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 7.85 71.98 0.56 -3.91 16 2 C 0.16 6.15 3.03 44.97 0.14 6.29 16 3 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 4 C 0.15 4.84 1.99 45.07 0.09 4.93 16 5 H 0.06 2.44 7.58 -2.38 -0.02 2.42 16 6 N -0.70 -17.29 4.52 -445.06 -2.01 -19.30 16 7 C 0.56 14.69 7.75 86.79 0.67 15.36 16 8 O -0.57 -19.42 16.09 -3.89 -0.06 -19.48 16 9 C -0.17 -3.45 5.89 -19.99 -0.12 -3.57 16 10 C -0.02 -0.32 9.72 22.73 0.22 -0.10 16 11 C -0.14 -1.74 9.42 22.32 0.21 -1.53 16 12 C 0.06 0.89 6.58 42.57 0.28 1.17 16 13 C 0.33 3.62 5.72 71.24 0.41 4.03 16 14 F -0.20 -3.52 17.05 44.97 0.77 -2.75 16 15 F -0.20 -2.45 16.45 44.97 0.74 -1.71 16 16 N -0.48 -8.71 9.94 -182.82 -1.82 -10.53 16 17 C 0.14 2.41 10.71 85.02 0.91 3.32 16 18 C -0.11 -3.58 5.46 30.62 0.17 -3.41 16 19 C -0.13 -4.87 6.08 30.66 0.19 -4.68 16 20 C 0.18 8.19 5.28 86.35 0.46 8.65 16 21 N -0.60 -28.58 2.99 -675.29 -2.02 -30.59 16 22 C -0.25 -13.40 8.58 84.04 0.72 -12.68 16 23 H 0.07 3.64 6.24 -2.91 -0.02 3.62 16 24 C -0.05 -2.56 4.94 84.86 0.42 -2.14 16 25 N -0.93 -53.82 11.23 21.65 0.24 -53.58 16 26 Si 0.96 44.36 29.58 68.60 2.03 46.39 16 27 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 28 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 29 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 30 H 0.07 2.01 7.78 -2.39 -0.02 1.99 16 31 H 0.05 1.85 7.67 -2.39 -0.02 1.83 16 32 H 0.04 1.53 7.41 -2.39 -0.02 1.52 16 33 H 0.41 7.58 6.67 -92.71 -0.62 6.97 16 34 H 0.16 2.56 7.74 -2.91 -0.02 2.54 16 35 H 0.18 1.23 7.59 -2.91 -0.02 1.21 16 36 H 0.18 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.19 2.26 6.42 -2.92 -0.02 2.24 16 38 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.05 2.82 6.15 -2.39 -0.01 2.81 16 43 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 44 H 0.25 14.05 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -69.79 364.70 3.62 -66.17 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.43 Total: 13.66 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 5.32 Total: 11.72 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -5.60 Total: -114.00 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.06 Total: -19.48 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 1.51 Total: -4.47 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -69.79 3.62 -66.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993408667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.287 kcal (2) G-P(sol) polarization free energy of solvation -69.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds