Wall clock time and date at job start Wed Apr 1 2020 00:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.70535 * 2 1 4 4 C 1.53196 * 109.58553 * 120.35512 * 2 1 3 5 5 H 1.09001 * 109.49491 * 294.40569 * 4 2 1 6 6 N 1.46499 * 109.49978 * 54.47122 * 4 2 1 7 7 C 1.34773 * 119.99790 * 205.00031 * 6 4 2 8 8 O 1.21551 * 120.00017 * 359.97438 * 7 6 4 9 9 C 1.47841 * 119.99809 * 180.27091 * 7 6 4 10 10 C 1.40021 * 120.55901 * 179.44681 * 9 7 6 11 11 C 1.38362 * 118.29083 * 179.73390 * 10 9 7 12 12 C 1.38352 * 119.29943 * 0.54804 * 11 10 9 13 13 C 1.50702 * 119.46247 * 179.69646 * 12 11 10 14 14 F 1.39896 * 109.46817 * 300.01791 * 13 12 11 15 15 F 1.39898 * 109.46980 * 60.01797 * 13 12 11 16 16 N 1.31933 * 121.07757 * 359.71318 * 12 11 10 17 17 C 1.31690 * 121.88397 * 0.02562 * 16 12 11 18 18 C 1.53045 * 109.31097 * 174.42523 * 4 2 1 19 19 C 1.53042 * 109.53618 * 298.62705 * 18 4 2 20 20 C 1.53202 * 109.30903 * 61.37045 * 19 18 4 21 21 N 1.46920 * 108.77261 * 305.36316 * 20 19 18 22 22 C 1.36946 * 120.63053 * 233.63151 * 21 20 19 23 23 H 1.07991 * 120.00291 * 150.15052 * 22 21 20 24 24 C 1.38810 * 119.99636 * 330.14924 * 22 21 20 25 25 N 1.31626 * 120.00320 * 344.50137 * 24 22 21 26 26 Si 1.86796 * 120.00113 * 164.50098 * 24 22 21 27 27 H 1.48502 * 109.47078 * 59.99716 * 26 24 22 28 28 H 1.48501 * 109.47661 * 179.97438 * 26 24 22 29 29 H 1.48507 * 109.47276 * 300.00284 * 26 24 22 30 30 H 1.08996 * 109.47068 * 299.64701 * 1 2 3 31 31 H 1.09001 * 109.46685 * 59.65110 * 1 2 3 32 32 H 1.09008 * 109.47145 * 179.64448 * 1 2 3 33 33 H 0.96998 * 120.00020 * 25.00120 * 6 4 2 34 34 H 1.08007 * 120.85829 * 0.02562 * 10 9 7 35 35 H 1.07994 * 120.35216 * 180.26075 * 11 10 9 36 36 H 1.08992 * 109.47210 * 180.02562 * 13 12 11 37 37 H 1.07995 * 119.72280 * 180.02562 * 17 16 12 38 38 H 1.08992 * 109.46333 * 58.65323 * 18 4 2 39 39 H 1.09004 * 109.45612 * 178.61328 * 18 4 2 40 40 H 1.08994 * 109.50297 * 301.42063 * 19 18 4 41 41 H 1.08996 * 109.52553 * 181.33403 * 19 18 4 42 42 H 1.09003 * 109.58452 * 185.57796 * 20 19 18 43 43 H 1.08997 * 109.70450 * 65.22299 * 20 19 18 44 44 H 0.96996 * 120.00350 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7294 1.2455 5 1 1.7654 -0.1671 2.1369 6 7 1.4514 -2.0680 1.3072 7 6 1.3284 -2.6963 2.4931 8 8 1.7092 -2.1526 3.5114 9 6 0.7363 -4.0496 2.5547 10 6 0.6135 -4.7179 3.7790 11 6 0.0473 -5.9803 3.7831 12 6 -0.3648 -6.5414 2.5875 13 6 -0.9757 -7.9191 2.5868 14 9 -0.0540 -8.8380 3.0997 15 9 -2.1265 -7.9193 3.3823 16 7 -0.2315 -5.8902 1.4478 17 6 0.2962 -4.6849 1.3931 18 6 3.5675 -0.8479 1.1702 19 6 3.9569 -1.6658 -0.0633 20 6 3.4651 -0.9470 -1.3237 21 7 2.0226 -0.6996 -1.1944 22 6 1.1536 -1.1136 -2.1685 23 1 0.1398 -1.3809 -1.9097 24 6 1.5760 -1.1897 -3.4886 25 7 2.6865 -0.5886 -3.8600 26 14 0.5682 -2.1449 -4.7381 27 1 -0.7925 -1.5572 -4.8300 28 1 1.2287 -2.0728 -6.0662 29 1 0.4667 -3.5638 -4.3116 30 1 -0.3633 0.5083 0.8931 31 1 -0.3633 0.5193 -0.8869 32 1 -0.3634 -1.0277 -0.0064 33 1 1.1479 -2.5020 0.4946 34 1 0.9477 -4.2578 4.6973 35 1 -0.0674 -6.5240 4.7091 36 1 -1.2388 -8.1993 1.5669 37 1 0.3883 -4.1834 0.4410 38 1 4.0061 0.1473 1.0994 39 1 3.9378 -1.3448 2.0670 40 1 3.4983 -2.6528 -0.0051 41 1 5.0411 -1.7702 -0.1038 42 1 3.6518 -1.5719 -2.1971 43 1 3.9901 0.0017 -1.4342 44 1 2.9814 -0.6415 -4.7825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993408673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:48 Heat of formation + Delta-G solvation = -79.175274 kcal Electronic energy + Delta-G solvation = -30114.115672 eV Core-core repulsion = 25702.685073 eV Total energy + Delta-G solvation = -4411.430599 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -49.37624 -47.36040 -40.88692 -39.47796 -37.64772 -34.15890 -33.15549 -32.77152 -32.25704 -31.60734 -29.54848 -27.46536 -26.24512 -25.08919 -24.12798 -23.47093 -22.05452 -21.00014 -20.58036 -18.93502 -18.41533 -17.90668 -17.61397 -17.59492 -16.63762 -16.27577 -15.41120 -15.21406 -15.12477 -14.85056 -14.58317 -14.39510 -14.05183 -13.92971 -13.72618 -13.62861 -13.47820 -13.39685 -13.13289 -13.05846 -12.76491 -12.62685 -11.94081 -11.63701 -11.36772 -11.32477 -11.03401 -10.78029 -10.71528 -10.61381 -10.29972 -10.28332 -10.18082 -10.09894 -9.77109 -9.67359 -9.63117 -9.39257 -8.70095 -8.54497 -6.75751 -5.88844 -3.35332 0.17060 0.84534 2.69480 2.94021 3.28750 3.31039 3.37467 3.38808 3.53950 3.80394 4.04445 4.37722 4.38766 4.48922 4.65359 4.65476 4.77134 4.92471 5.19225 5.23722 5.25133 5.46770 5.48737 5.58646 5.64715 5.74989 5.86672 6.01657 6.09340 6.13091 6.22438 6.32327 6.43882 6.54233 6.58701 6.68624 6.84130 6.86360 6.96656 7.29410 7.34712 7.58306 7.69925 7.75950 8.32126 8.34941 9.10128 9.72877 10.30036 11.19044 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011565 B = 0.003548 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.488068 B = 7890.523107 C = 9395.161427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.159 3.841 3 H 0.042 0.958 4 C 0.133 3.867 5 H 0.079 0.921 6 N -0.689 5.689 7 C 0.555 3.445 8 O -0.544 6.544 9 C -0.157 4.157 10 C -0.019 4.019 11 C -0.141 4.141 12 C 0.063 3.937 13 C 0.324 3.676 14 F -0.193 7.193 15 F -0.193 7.193 16 N -0.458 5.458 17 C 0.140 3.860 18 C -0.121 4.121 19 C -0.141 4.141 20 C 0.171 3.829 21 N -0.586 5.586 22 C -0.262 4.262 23 H 0.070 0.930 24 C 0.010 3.990 25 N -0.898 5.898 26 Si 0.899 3.101 27 H -0.282 1.282 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.408 0.592 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.135 0.865 37 H 0.174 0.826 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.086 0.914 43 H 0.019 0.981 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.286 -9.488 12.631 16.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.051 3.949 3 H 0.059 0.941 4 C 0.027 3.973 5 H 0.097 0.903 6 N -0.340 5.340 7 C 0.340 3.660 8 O -0.423 6.423 9 C -0.162 4.162 10 C -0.046 4.046 11 C -0.161 4.161 12 C -0.076 4.076 13 C 0.269 3.731 14 F -0.174 7.174 15 F -0.174 7.174 16 N -0.166 5.166 17 C -0.019 4.019 18 C -0.160 4.160 19 C -0.180 4.180 20 C 0.046 3.954 21 N -0.310 5.310 22 C -0.392 4.392 23 H 0.088 0.912 24 C -0.190 4.190 25 N -0.541 5.541 26 Si 0.728 3.272 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.209 1.209 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.246 0.754 34 H 0.173 0.827 35 H 0.164 0.836 36 H 0.152 0.848 37 H 0.191 0.809 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.037 0.963 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.229 -9.475 12.383 16.155 hybrid contribution -0.217 -0.286 -0.299 0.467 sum -4.446 -9.760 12.084 16.157 Atomic orbital electron populations 1.21790 0.95565 1.01410 1.00615 1.20732 0.93383 0.94018 0.86736 0.94056 1.21647 0.93064 0.82368 1.00200 0.90268 1.45968 1.60636 1.18845 1.08564 1.17929 0.79195 0.84548 0.84365 1.90752 1.50390 1.66832 1.34322 1.21330 1.02537 0.96976 0.95405 1.21759 0.91898 0.92569 0.98351 1.21879 0.98791 0.96232 0.99233 1.21670 0.99012 0.96454 0.90467 1.20122 0.75157 0.84143 0.93636 1.93034 1.67243 1.67649 1.89446 1.93033 1.50202 1.96822 1.77332 1.67265 1.13054 1.08742 1.27549 1.23142 0.90937 0.89509 0.98346 1.21776 0.95200 1.00684 0.98315 1.22147 0.99088 0.99454 0.97301 1.20796 0.83151 0.97235 0.94247 1.44173 1.03123 1.64845 1.18865 1.19082 0.95219 1.38673 0.86180 0.91233 1.25106 0.97715 0.99141 0.97014 1.70009 1.23965 1.43212 1.16914 0.86442 0.79673 0.80239 0.80805 1.20861 1.21685 1.20851 0.94126 0.91613 0.92911 0.75374 0.82726 0.83559 0.84822 0.80929 0.91664 0.93065 0.92952 0.93328 0.89609 0.96277 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 7.73 37.16 0.29 -2.02 16 2 C 0.16 2.93 3.20 -67.60 -0.22 2.71 16 3 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.13 2.20 2.33 -67.81 -0.16 2.04 16 5 H 0.08 1.31 7.58 -51.93 -0.39 0.91 16 6 N -0.69 -10.59 3.42 -54.63 -0.19 -10.77 16 7 C 0.55 8.41 7.75 -12.33 -0.10 8.32 16 8 O -0.54 -9.58 16.08 5.32 0.09 -9.50 16 9 C -0.16 -2.03 5.89 -104.82 -0.62 -2.65 16 10 C -0.02 -0.22 9.72 -38.87 -0.38 -0.59 16 11 C -0.14 -1.43 9.60 -39.49 -0.38 -1.81 16 12 C 0.06 0.69 6.28 -82.51 -0.52 0.17 16 13 C 0.32 2.97 5.54 36.01 0.20 3.17 16 14 F -0.19 -1.93 17.25 2.25 0.04 -1.89 16 15 F -0.19 -1.91 17.25 2.25 0.04 -1.87 16 16 N -0.46 -5.71 10.23 -9.14 -0.09 -5.80 16 17 C 0.14 1.75 10.71 -17.13 -0.18 1.57 16 18 C -0.12 -2.01 5.58 -26.69 -0.15 -2.16 16 19 C -0.14 -2.51 5.93 -26.61 -0.16 -2.67 16 20 C 0.17 3.71 5.28 -3.71 -0.02 3.69 16 21 N -0.59 -12.72 2.64 -164.77 -0.44 -13.15 16 22 C -0.26 -6.25 8.58 -15.06 -0.13 -6.38 16 23 H 0.07 1.60 6.23 -52.49 -0.33 1.27 16 24 C 0.01 0.25 4.94 -17.43 -0.09 0.17 16 25 N -0.90 -24.28 11.23 55.49 0.62 -23.65 16 26 Si 0.90 20.16 29.58 -169.99 -5.03 15.13 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 29 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.21 7.67 -51.93 -0.40 0.81 16 32 H 0.05 0.87 6.37 -51.92 -0.33 0.54 16 33 H 0.41 6.30 5.84 -40.82 -0.24 6.06 16 34 H 0.16 1.58 7.74 -52.48 -0.41 1.18 16 35 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.13 0.95 8.10 -51.93 -0.42 0.53 16 37 H 0.17 2.06 6.42 -52.49 -0.34 1.72 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.94 7.53 -51.93 -0.39 0.55 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 2.11 6.15 -51.93 -0.32 1.79 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -28.27 362.88 -7.75 -36.01 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.66 Total: 6.47 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -2.60 Total: 3.55 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.09 Total: -53.38 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.08 Total: -3.76 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.27 -7.75 -36.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993408673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.163 kcal (2) G-P(sol) polarization free energy of solvation -28.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds