Wall clock time and date at job start Wed Apr 1 2020 00:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.70535 * 2 1 4 4 C 1.53196 * 109.58553 * 120.35512 * 2 1 3 5 5 H 1.09001 * 109.49491 * 294.40569 * 4 2 1 6 6 N 1.46499 * 109.49978 * 54.47122 * 4 2 1 7 7 C 1.34773 * 119.99790 * 205.00031 * 6 4 2 8 8 O 1.21551 * 120.00017 * 359.97438 * 7 6 4 9 9 C 1.47841 * 119.99809 * 180.27091 * 7 6 4 10 10 C 1.40021 * 120.55901 * 179.44681 * 9 7 6 11 11 C 1.38362 * 118.29083 * 179.73390 * 10 9 7 12 12 C 1.38352 * 119.29943 * 0.54804 * 11 10 9 13 13 C 1.50702 * 119.46247 * 179.69646 * 12 11 10 14 14 F 1.39896 * 109.46817 * 300.01791 * 13 12 11 15 15 F 1.39898 * 109.46980 * 60.01797 * 13 12 11 16 16 N 1.31933 * 121.07757 * 359.71318 * 12 11 10 17 17 C 1.31690 * 121.88397 * 0.02562 * 16 12 11 18 18 C 1.53045 * 109.31097 * 174.42523 * 4 2 1 19 19 C 1.53042 * 109.53618 * 298.62705 * 18 4 2 20 20 C 1.53202 * 109.30903 * 61.37045 * 19 18 4 21 21 N 1.46920 * 108.77261 * 305.36316 * 20 19 18 22 22 C 1.36946 * 120.63053 * 233.63151 * 21 20 19 23 23 H 1.07991 * 120.00291 * 150.15052 * 22 21 20 24 24 C 1.38810 * 119.99636 * 330.14924 * 22 21 20 25 25 N 1.31626 * 120.00320 * 344.50137 * 24 22 21 26 26 Si 1.86796 * 120.00113 * 164.50098 * 24 22 21 27 27 H 1.48502 * 109.47078 * 59.99716 * 26 24 22 28 28 H 1.48501 * 109.47661 * 179.97438 * 26 24 22 29 29 H 1.48507 * 109.47276 * 300.00284 * 26 24 22 30 30 H 1.08996 * 109.47068 * 299.64701 * 1 2 3 31 31 H 1.09001 * 109.46685 * 59.65110 * 1 2 3 32 32 H 1.09008 * 109.47145 * 179.64448 * 1 2 3 33 33 H 0.96998 * 120.00020 * 25.00120 * 6 4 2 34 34 H 1.08007 * 120.85829 * 0.02562 * 10 9 7 35 35 H 1.07994 * 120.35216 * 180.26075 * 11 10 9 36 36 H 1.08992 * 109.47210 * 180.02562 * 13 12 11 37 37 H 1.07995 * 119.72280 * 180.02562 * 17 16 12 38 38 H 1.08992 * 109.46333 * 58.65323 * 18 4 2 39 39 H 1.09004 * 109.45612 * 178.61328 * 18 4 2 40 40 H 1.08994 * 109.50297 * 301.42063 * 19 18 4 41 41 H 1.08996 * 109.52553 * 181.33403 * 19 18 4 42 42 H 1.09003 * 109.58452 * 185.57796 * 20 19 18 43 43 H 1.08997 * 109.70450 * 65.22299 * 20 19 18 44 44 H 0.96996 * 120.00350 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7294 1.2455 5 1 1.7654 -0.1671 2.1369 6 7 1.4514 -2.0680 1.3072 7 6 1.3284 -2.6963 2.4931 8 8 1.7092 -2.1526 3.5114 9 6 0.7363 -4.0496 2.5547 10 6 0.6135 -4.7179 3.7790 11 6 0.0473 -5.9803 3.7831 12 6 -0.3648 -6.5414 2.5875 13 6 -0.9757 -7.9191 2.5868 14 9 -0.0540 -8.8380 3.0997 15 9 -2.1265 -7.9193 3.3823 16 7 -0.2315 -5.8902 1.4478 17 6 0.2962 -4.6849 1.3931 18 6 3.5675 -0.8479 1.1702 19 6 3.9569 -1.6658 -0.0633 20 6 3.4651 -0.9470 -1.3237 21 7 2.0226 -0.6996 -1.1944 22 6 1.1536 -1.1136 -2.1685 23 1 0.1398 -1.3809 -1.9097 24 6 1.5760 -1.1897 -3.4886 25 7 2.6865 -0.5886 -3.8600 26 14 0.5682 -2.1449 -4.7381 27 1 -0.7925 -1.5572 -4.8300 28 1 1.2287 -2.0728 -6.0662 29 1 0.4667 -3.5638 -4.3116 30 1 -0.3633 0.5083 0.8931 31 1 -0.3633 0.5193 -0.8869 32 1 -0.3634 -1.0277 -0.0064 33 1 1.1479 -2.5020 0.4946 34 1 0.9477 -4.2578 4.6973 35 1 -0.0674 -6.5240 4.7091 36 1 -1.2388 -8.1993 1.5669 37 1 0.3883 -4.1834 0.4410 38 1 4.0061 0.1473 1.0994 39 1 3.9378 -1.3448 2.0670 40 1 3.4983 -2.6528 -0.0051 41 1 5.0411 -1.7702 -0.1038 42 1 3.6518 -1.5719 -2.1971 43 1 3.9901 0.0017 -1.4342 44 1 2.9814 -0.6415 -4.7825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993408673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:48 Heat of formation + Delta-G solvation = -94.306773 kcal Electronic energy + Delta-G solvation = -30114.771823 eV Core-core repulsion = 25702.685073 eV Total energy + Delta-G solvation = -4412.086750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.11880 -48.10534 -41.90791 -40.68970 -39.07064 -35.68781 -34.32454 -33.89939 -33.57231 -32.99614 -31.09548 -28.47649 -27.65060 -26.80450 -25.04237 -24.51518 -23.51178 -22.40787 -21.89146 -20.37178 -19.40043 -18.75005 -18.56138 -18.35579 -18.21610 -17.37548 -16.98310 -16.38867 -16.29476 -16.10576 -15.78666 -15.56726 -15.34391 -15.07948 -14.88745 -14.65101 -14.51550 -14.47144 -14.38984 -14.33402 -14.18559 -13.58231 -13.53150 -12.95554 -12.85802 -12.68360 -12.44605 -12.38793 -12.34115 -12.17374 -11.93909 -11.66820 -11.40773 -11.34011 -11.18721 -11.01642 -10.73067 -10.55295 -10.46540 -9.97667 -8.58948 -7.80027 -5.26866 -0.75681 -0.02711 1.52489 1.54844 1.59239 1.63342 2.07038 2.18492 2.53957 2.55994 3.10592 3.23869 3.36960 3.52891 3.58942 3.61211 3.69762 3.84763 3.92586 4.01243 4.06998 4.12576 4.21720 4.39663 4.41365 4.58242 4.66671 4.67766 4.77983 4.87284 4.96101 5.00706 5.04566 5.13034 5.21974 5.23443 5.35804 5.46479 5.54862 5.60275 5.76714 5.81860 6.44283 6.46235 6.53501 7.11248 7.22032 7.91597 8.44775 9.26434 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011565 B = 0.003548 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.488068 B = 7890.523107 C = 9395.161427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.156 3.844 3 H 0.033 0.967 4 C 0.143 3.857 5 H 0.086 0.914 6 N -0.688 5.688 7 C 0.561 3.439 8 O -0.569 6.569 9 C -0.170 4.170 10 C -0.016 4.016 11 C -0.136 4.136 12 C 0.058 3.942 13 C 0.328 3.672 14 F -0.196 7.196 15 F -0.196 7.196 16 N -0.471 5.471 17 C 0.137 3.863 18 C -0.116 4.116 19 C -0.127 4.127 20 C 0.179 3.821 21 N -0.596 5.596 22 C -0.249 4.249 23 H 0.081 0.919 24 C -0.045 4.045 25 N -0.935 5.935 26 Si 0.954 3.046 27 H -0.278 1.278 28 H -0.305 1.305 29 H -0.275 1.275 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.409 0.591 34 H 0.165 0.835 35 H 0.172 0.828 36 H 0.157 0.843 37 H 0.174 0.826 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.054 0.946 43 H -0.005 1.005 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.465 -10.916 14.432 18.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.050 3.950 3 H 0.051 0.949 4 C 0.037 3.963 5 H 0.104 0.896 6 N -0.339 5.339 7 C 0.347 3.653 8 O -0.450 6.450 9 C -0.175 4.175 10 C -0.043 4.043 11 C -0.156 4.156 12 C -0.081 4.081 13 C 0.274 3.726 14 F -0.178 7.178 15 F -0.177 7.177 16 N -0.180 5.180 17 C -0.022 4.022 18 C -0.154 4.154 19 C -0.166 4.166 20 C 0.054 3.946 21 N -0.320 5.320 22 C -0.379 4.379 23 H 0.099 0.901 24 C -0.240 4.240 25 N -0.581 5.581 26 Si 0.784 3.216 27 H -0.204 1.204 28 H -0.232 1.232 29 H -0.201 1.201 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.247 0.753 34 H 0.183 0.817 35 H 0.190 0.810 36 H 0.174 0.826 37 H 0.191 0.809 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.013 0.987 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.433 -10.917 14.213 18.727 hybrid contribution 0.126 0.155 -0.765 0.790 sum -5.307 -10.762 13.448 18.024 Atomic orbital electron populations 1.21718 0.94208 1.01783 1.00963 1.20853 0.94513 0.93523 0.86123 0.94908 1.21421 0.92928 0.82934 0.99050 0.89577 1.45902 1.60686 1.18417 1.08856 1.18140 0.78445 0.85064 0.83611 1.90738 1.51578 1.67664 1.34986 1.21147 1.03874 0.96087 0.96361 1.21935 0.91382 0.92847 0.98092 1.22159 0.97599 0.95765 1.00036 1.22061 0.98473 0.97135 0.90415 1.20246 0.74725 0.83117 0.94529 1.93029 1.67476 1.67656 1.89600 1.93029 1.50332 1.96768 1.77573 1.67280 1.13548 1.08752 1.28380 1.23146 0.91027 0.89715 0.98322 1.21727 0.95347 1.00709 0.97624 1.21955 0.99768 0.99008 0.95840 1.20567 0.83351 0.95781 0.94944 1.44347 1.02908 1.65398 1.19383 1.19437 0.95659 1.36448 0.86345 0.90103 1.25739 0.98807 1.00698 0.98803 1.70166 1.25871 1.45527 1.16507 0.85546 0.78325 0.79473 0.78296 1.20436 1.23179 1.20055 0.91659 0.93410 0.92444 0.75343 0.81750 0.81025 0.82631 0.80873 0.91258 0.92377 0.92896 0.92052 0.92786 0.98707 0.94508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 7.73 71.98 0.56 -3.62 16 2 C 0.16 5.63 3.20 44.97 0.14 5.77 16 3 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 4 C 0.14 4.49 2.33 45.07 0.10 4.59 16 5 H 0.09 2.66 7.58 -2.39 -0.02 2.64 16 6 N -0.69 -20.05 3.42 -445.03 -1.52 -21.57 16 7 C 0.56 16.04 7.75 86.79 0.67 16.71 16 8 O -0.57 -19.00 16.08 -3.88 -0.06 -19.07 16 9 C -0.17 -4.08 5.89 -19.99 -0.12 -4.20 16 10 C -0.02 -0.33 9.72 22.73 0.22 -0.10 16 11 C -0.14 -2.38 9.60 22.33 0.21 -2.17 16 12 C 0.06 1.13 6.28 42.57 0.27 1.40 16 13 C 0.33 5.17 5.54 71.24 0.39 5.57 16 14 F -0.20 -3.45 17.25 44.97 0.78 -2.67 16 15 F -0.20 -3.39 17.25 44.97 0.78 -2.61 16 16 N -0.47 -10.82 10.23 -182.82 -1.87 -12.69 16 17 C 0.14 3.22 10.71 85.02 0.91 4.13 16 18 C -0.12 -3.66 5.58 30.62 0.17 -3.49 16 19 C -0.13 -4.43 5.93 30.68 0.18 -4.25 16 20 C 0.18 7.90 5.28 86.37 0.46 8.36 16 21 N -0.60 -25.87 2.64 -675.22 -1.78 -27.66 16 22 C -0.25 -11.82 8.58 84.03 0.72 -11.10 16 23 H 0.08 3.62 6.23 -2.91 -0.02 3.60 16 24 C -0.04 -2.29 4.94 84.86 0.42 -1.87 16 25 N -0.93 -52.12 11.23 21.65 0.24 -51.88 16 26 Si 0.95 41.83 29.58 68.60 2.03 43.86 16 27 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 28 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 29 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 31 H 0.05 1.71 7.67 -2.39 -0.02 1.69 16 32 H 0.06 1.79 6.37 -2.38 -0.02 1.77 16 33 H 0.41 12.04 5.84 -92.71 -0.54 11.50 16 34 H 0.16 2.97 7.74 -2.91 -0.02 2.95 16 35 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 36 H 0.16 1.79 8.10 -2.39 -0.02 1.77 16 37 H 0.17 3.93 6.42 -2.91 -0.02 3.91 16 38 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.05 1.85 7.53 -2.39 -0.02 1.83 16 41 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.05 2.74 6.15 -2.39 -0.01 2.72 16 43 H -0.01 -0.25 8.14 -2.39 -0.02 -0.27 16 44 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 Total: -1.00 -60.38 362.88 4.41 -55.97 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.51 Total: 22.59 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 5.32 Total: 15.73 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -4.93 Total: -113.81 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.06 Total: -19.07 kcal Atomic # 9 Polarization: -6.84 SS G_CDS: 1.55 Total: -5.29 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -60.38 4.41 -55.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993408673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.335 kcal (2) G-P(sol) polarization free energy of solvation -60.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds