Wall clock time and date at job start Wed Apr 1 2020 00:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.58159 * 2 1 4 4 C 1.53190 * 109.59133 * 239.71744 * 2 1 3 5 5 H 1.09002 * 109.49519 * 305.55815 * 4 2 1 6 6 N 1.46503 * 109.49780 * 65.62426 * 4 2 1 7 7 C 1.34781 * 119.99462 * 204.93961 * 6 4 2 8 8 O 1.21544 * 120.00241 * 359.97438 * 7 6 4 9 9 C 1.47845 * 119.99320 * 179.97438 * 7 6 4 10 10 C 1.40022 * 120.55516 * 179.97438 * 9 7 6 11 11 C 1.38357 * 118.28799 * 180.02562 * 10 9 7 12 12 C 1.38353 * 119.29995 * 0.27077 * 11 10 9 13 13 C 1.50704 * 119.45484 * 179.70261 * 12 11 10 14 14 F 1.39891 * 109.47549 * 300.00121 * 13 12 11 15 15 F 1.39901 * 109.47024 * 60.00413 * 13 12 11 16 16 N 1.31926 * 121.08074 * 359.42871 * 12 11 10 17 17 C 1.31688 * 121.87839 * 0.58888 * 16 12 11 18 18 C 1.53040 * 109.33996 * 185.59439 * 4 2 1 19 19 C 1.53037 * 109.54231 * 61.31302 * 18 4 2 20 20 C 1.53199 * 109.33660 * 298.68623 * 19 18 4 21 21 N 1.46922 * 108.77527 * 54.61887 * 20 19 18 22 22 C 1.36942 * 120.62753 * 126.41502 * 21 20 19 23 23 H 1.08003 * 119.99494 * 208.98946 * 22 21 20 24 24 C 1.38810 * 120.00127 * 28.98868 * 22 21 20 25 25 N 1.31619 * 119.99867 * 15.04190 * 24 22 21 26 26 Si 1.86803 * 119.99755 * 195.03678 * 24 22 21 27 27 H 1.48496 * 109.47059 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46682 * 119.99961 * 26 24 22 29 29 H 1.48497 * 109.47077 * 239.99960 * 26 24 22 30 30 H 1.09007 * 109.46803 * 180.28448 * 1 2 3 31 31 H 1.09000 * 109.47536 * 300.28393 * 1 2 3 32 32 H 1.09007 * 109.47343 * 60.28921 * 1 2 3 33 33 H 0.96998 * 119.99874 * 24.93295 * 6 4 2 34 34 H 1.08005 * 120.85796 * 0.03747 * 10 9 7 35 35 H 1.08001 * 120.34859 * 180.02562 * 11 10 9 36 36 H 1.09006 * 109.47118 * 180.02562 * 13 12 11 37 37 H 1.07998 * 119.71746 * 179.67788 * 17 16 12 38 38 H 1.08997 * 109.45769 * 181.36911 * 18 4 2 39 39 H 1.09007 * 109.45594 * 301.32298 * 18 4 2 40 40 H 1.08996 * 109.49664 * 178.72114 * 19 18 4 41 41 H 1.08996 * 109.49546 * 58.65179 * 19 18 4 42 42 H 1.08999 * 109.58362 * 294.82806 * 20 19 18 43 43 H 1.09002 * 109.58011 * 174.40863 * 20 19 18 44 44 H 0.97001 * 119.99236 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 1 1.6026 -1.7235 -1.2937 6 7 1.6706 0.0298 -2.4435 7 6 1.5486 -0.6002 -3.6287 8 8 1.7485 -1.7967 -3.7044 9 6 1.1716 0.1643 -4.8367 10 6 1.0420 -0.4782 -6.0741 11 6 0.6877 0.2826 -7.1740 12 6 0.4803 1.6416 -7.0188 13 6 0.1008 2.4748 -8.2159 14 9 1.1079 2.3879 -9.1828 15 9 -1.1019 2.0013 -8.7512 16 7 0.6040 2.2191 -5.8391 17 6 0.9394 1.5380 -4.7631 18 6 3.5675 -0.8471 -1.1715 19 6 3.9570 -1.6656 0.0615 20 6 3.4650 -0.9484 1.3227 21 7 2.0225 -0.7009 1.1936 22 6 1.1537 -1.1153 2.1677 23 1 0.1358 -1.3693 1.9108 24 6 1.5812 -1.2090 3.4849 25 7 2.7044 -0.6312 3.8550 26 14 0.5623 -2.1551 4.7325 27 1 -0.6461 -2.7065 4.0685 28 1 1.3716 -3.2683 5.2903 29 1 0.1519 -1.2430 5.8302 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3634 0.5182 0.8874 32 1 -0.3634 0.5094 -0.8926 33 1 1.5114 0.9847 -2.3830 34 1 1.2141 -1.5404 -6.1674 35 1 0.5781 -0.1789 -8.1443 36 1 -0.0211 3.5143 -7.9112 37 1 1.0359 2.0473 -3.8156 38 1 3.9374 -1.3431 -2.0689 39 1 4.0066 0.1481 -1.0997 40 1 5.0413 -1.7694 0.1017 41 1 3.4989 -2.6529 0.0024 42 1 3.9902 0.0005 1.4318 43 1 3.6518 -1.5743 2.1953 44 1 3.0032 -0.6970 4.7754 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993408677.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:55 Heat of formation + Delta-G solvation = -79.616228 kcal Electronic energy + Delta-G solvation = -29237.209477 eV Core-core repulsion = 24825.759758 eV Total energy + Delta-G solvation = -4411.449720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.50108 -47.48556 -41.04167 -39.50375 -37.69462 -34.56636 -33.29802 -32.88637 -32.39214 -31.64946 -29.40784 -27.58868 -26.18230 -25.07260 -24.31081 -23.59094 -22.08430 -20.79631 -20.58144 -19.59897 -18.47338 -18.10920 -17.73875 -17.63063 -16.76876 -16.32573 -15.57855 -15.40147 -15.22442 -14.89667 -14.69630 -14.47571 -14.05542 -13.85107 -13.84766 -13.78824 -13.64222 -13.54922 -13.39584 -12.93753 -12.82457 -12.61361 -11.80546 -11.77407 -11.60796 -11.19797 -10.97749 -10.81559 -10.64616 -10.50140 -10.44938 -10.37265 -10.19150 -10.07248 -9.96408 -9.80459 -9.71278 -9.44912 -8.83251 -8.51356 -6.73988 -5.84490 -3.29295 -0.00054 0.67490 2.53063 2.78430 3.05328 3.33749 3.37036 3.42389 3.43947 3.66770 3.87129 4.19022 4.29787 4.42607 4.48701 4.51786 4.58573 4.75979 5.02386 5.21864 5.30262 5.40436 5.44580 5.50685 5.58965 5.70272 5.87450 5.91803 5.98382 6.13102 6.24549 6.32246 6.44220 6.50332 6.61707 6.68583 6.76557 6.90608 6.97953 7.14709 7.34747 7.49848 7.62822 7.76975 8.13439 8.39181 9.14752 9.77141 10.32712 11.24053 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.025906 B = 0.002244 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.567581 B =12474.378737 C =12853.047766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.167 3.833 3 H 0.029 0.971 4 C 0.130 3.870 5 H 0.089 0.911 6 N -0.708 5.708 7 C 0.557 3.443 8 O -0.530 6.530 9 C -0.157 4.157 10 C -0.018 4.018 11 C -0.138 4.138 12 C 0.063 3.937 13 C 0.324 3.676 14 F -0.192 7.192 15 F -0.192 7.192 16 N -0.459 5.459 17 C 0.136 3.864 18 C -0.117 4.117 19 C -0.140 4.140 20 C 0.168 3.832 21 N -0.581 5.581 22 C -0.252 4.252 23 H 0.072 0.928 24 C 0.004 3.996 25 N -0.902 5.902 26 Si 0.902 3.098 27 H -0.277 1.277 28 H -0.289 1.289 29 H -0.290 1.290 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.396 0.604 34 H 0.157 0.843 35 H 0.148 0.852 36 H 0.134 0.866 37 H 0.170 0.830 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.019 0.981 43 H 0.090 0.910 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.713 6.071 -21.410 22.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.059 3.941 3 H 0.046 0.954 4 C 0.024 3.976 5 H 0.107 0.893 6 N -0.358 5.358 7 C 0.342 3.658 8 O -0.407 6.407 9 C -0.162 4.162 10 C -0.044 4.044 11 C -0.158 4.158 12 C -0.076 4.076 13 C 0.270 3.730 14 F -0.173 7.173 15 F -0.173 7.173 16 N -0.168 5.168 17 C -0.023 4.023 18 C -0.156 4.156 19 C -0.180 4.180 20 C 0.043 3.957 21 N -0.305 5.305 22 C -0.382 4.382 23 H 0.089 0.911 24 C -0.195 4.195 25 N -0.546 5.546 26 Si 0.732 3.268 27 H -0.202 1.202 28 H -0.215 1.215 29 H -0.217 1.217 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.231 0.769 34 H 0.174 0.826 35 H 0.166 0.834 36 H 0.152 0.848 37 H 0.187 0.813 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.038 0.962 43 H 0.108 0.892 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.668 6.094 -21.211 22.230 hybrid contribution -0.298 -0.928 0.555 1.122 sum -2.967 5.166 -20.656 21.498 Atomic orbital electron populations 1.21838 0.95594 1.01823 1.00288 1.20557 0.93283 0.93590 0.86625 0.95380 1.21915 0.95373 0.96907 0.83369 0.89267 1.46100 1.69161 1.12257 1.08276 1.17912 0.77980 0.87082 0.82847 1.90800 1.50225 1.14281 1.85402 1.21338 1.03448 0.95609 0.95824 1.21807 0.90803 1.01639 0.90177 1.21918 0.99233 0.93859 1.00794 1.21672 0.99428 0.92654 0.93799 1.20113 0.72655 0.99263 0.81000 1.93039 1.61181 1.97611 1.65480 1.93044 1.46015 1.90873 1.87362 1.67229 1.11566 1.39866 0.98121 1.23001 0.92353 0.90142 0.96837 1.21769 0.95082 1.00228 0.98505 1.22188 0.99333 0.99705 0.96775 1.20870 0.82994 0.97306 0.94542 1.44046 1.03210 1.64950 1.18255 1.19212 0.94830 1.37968 0.86164 0.91083 1.25079 0.97807 0.99616 0.96965 1.70028 1.23276 1.44429 1.16874 0.86229 0.79675 0.79523 0.81382 1.20219 1.21542 1.21718 0.92572 0.91624 0.94348 0.76942 0.82558 0.83392 0.84844 0.81277 0.93133 0.92631 0.92902 0.92468 0.96242 0.89156 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 7.84 37.16 0.29 -2.12 16 2 C 0.17 3.16 3.03 -67.60 -0.21 2.96 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 4 C 0.13 2.18 1.99 -67.81 -0.14 2.04 16 5 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 6 N -0.71 -9.28 4.53 -54.63 -0.25 -9.53 16 7 C 0.56 7.63 7.75 -12.33 -0.10 7.53 16 8 O -0.53 -9.18 16.08 5.33 0.09 -9.10 16 9 C -0.16 -1.70 5.89 -104.82 -0.62 -2.31 16 10 C -0.02 -0.17 9.72 -38.87 -0.38 -0.55 16 11 C -0.14 -1.18 9.60 -39.50 -0.38 -1.56 16 12 C 0.06 0.57 6.28 -82.51 -0.52 0.05 16 13 C 0.32 2.39 5.54 36.01 0.20 2.59 16 14 F -0.19 -1.61 17.25 2.25 0.04 -1.57 16 15 F -0.19 -1.62 17.25 2.25 0.04 -1.59 16 16 N -0.46 -4.45 10.23 -9.14 -0.09 -4.54 16 17 C 0.14 1.26 10.71 -17.14 -0.18 1.08 16 18 C -0.12 -1.99 5.46 -26.69 -0.15 -2.13 16 19 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 20 C 0.17 3.84 5.29 -3.71 -0.02 3.82 16 21 N -0.58 -13.60 2.99 -164.78 -0.49 -14.09 16 22 C -0.25 -6.50 8.61 -15.06 -0.13 -6.63 16 23 H 0.07 1.80 6.20 -52.48 -0.33 1.48 16 24 C 0.00 0.11 4.96 -17.43 -0.09 0.02 16 25 N -0.90 -25.19 11.14 55.49 0.62 -24.57 16 26 Si 0.90 21.11 29.58 -169.99 -5.03 16.08 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 30 H 0.06 1.04 7.40 -51.93 -0.38 0.66 16 31 H 0.06 1.23 7.66 -51.93 -0.40 0.83 16 32 H 0.04 0.54 7.79 -51.93 -0.40 0.13 16 33 H 0.40 4.05 6.67 -40.82 -0.27 3.77 16 34 H 0.16 1.43 7.74 -52.48 -0.41 1.03 16 35 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.13 0.67 8.10 -51.93 -0.42 0.25 16 37 H 0.17 1.16 6.42 -52.49 -0.34 0.82 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.09 2.33 6.06 -51.93 -0.31 2.01 16 44 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 365.94 15.07 5.51 5.51 Total: -1.00 -30.74 365.94 -7.88 -38.62 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.75 Total: 2.80 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -2.56 Total: 1.98 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.22 Total: -52.73 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.08 Total: -3.16 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.74 -7.88 -38.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993408677.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.995 kcal (2) G-P(sol) polarization free energy of solvation -30.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds