Wall clock time and date at job start Wed Apr 1 2020 00:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.58159 * 2 1 4 4 C 1.53190 * 109.59133 * 239.71744 * 2 1 3 5 5 H 1.09002 * 109.49519 * 305.55815 * 4 2 1 6 6 N 1.46503 * 109.49780 * 65.62426 * 4 2 1 7 7 C 1.34781 * 119.99462 * 204.93961 * 6 4 2 8 8 O 1.21544 * 120.00241 * 359.97438 * 7 6 4 9 9 C 1.47845 * 119.99320 * 179.97438 * 7 6 4 10 10 C 1.40022 * 120.55516 * 179.97438 * 9 7 6 11 11 C 1.38357 * 118.28799 * 180.02562 * 10 9 7 12 12 C 1.38353 * 119.29995 * 0.27077 * 11 10 9 13 13 C 1.50704 * 119.45484 * 179.70261 * 12 11 10 14 14 F 1.39891 * 109.47549 * 300.00121 * 13 12 11 15 15 F 1.39901 * 109.47024 * 60.00413 * 13 12 11 16 16 N 1.31926 * 121.08074 * 359.42871 * 12 11 10 17 17 C 1.31688 * 121.87839 * 0.58888 * 16 12 11 18 18 C 1.53040 * 109.33996 * 185.59439 * 4 2 1 19 19 C 1.53037 * 109.54231 * 61.31302 * 18 4 2 20 20 C 1.53199 * 109.33660 * 298.68623 * 19 18 4 21 21 N 1.46922 * 108.77527 * 54.61887 * 20 19 18 22 22 C 1.36942 * 120.62753 * 126.41502 * 21 20 19 23 23 H 1.08003 * 119.99494 * 208.98946 * 22 21 20 24 24 C 1.38810 * 120.00127 * 28.98868 * 22 21 20 25 25 N 1.31619 * 119.99867 * 15.04190 * 24 22 21 26 26 Si 1.86803 * 119.99755 * 195.03678 * 24 22 21 27 27 H 1.48496 * 109.47059 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46682 * 119.99961 * 26 24 22 29 29 H 1.48497 * 109.47077 * 239.99960 * 26 24 22 30 30 H 1.09007 * 109.46803 * 180.28448 * 1 2 3 31 31 H 1.09000 * 109.47536 * 300.28393 * 1 2 3 32 32 H 1.09007 * 109.47343 * 60.28921 * 1 2 3 33 33 H 0.96998 * 119.99874 * 24.93295 * 6 4 2 34 34 H 1.08005 * 120.85796 * 0.03747 * 10 9 7 35 35 H 1.08001 * 120.34859 * 180.02562 * 11 10 9 36 36 H 1.09006 * 109.47118 * 180.02562 * 13 12 11 37 37 H 1.07998 * 119.71746 * 179.67788 * 17 16 12 38 38 H 1.08997 * 109.45769 * 181.36911 * 18 4 2 39 39 H 1.09007 * 109.45594 * 301.32298 * 18 4 2 40 40 H 1.08996 * 109.49664 * 178.72114 * 19 18 4 41 41 H 1.08996 * 109.49546 * 58.65179 * 19 18 4 42 42 H 1.08999 * 109.58362 * 294.82806 * 20 19 18 43 43 H 1.09002 * 109.58011 * 174.40863 * 20 19 18 44 44 H 0.97001 * 119.99236 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 1 1.6026 -1.7235 -1.2937 6 7 1.6706 0.0298 -2.4435 7 6 1.5486 -0.6002 -3.6287 8 8 1.7485 -1.7967 -3.7044 9 6 1.1716 0.1643 -4.8367 10 6 1.0420 -0.4782 -6.0741 11 6 0.6877 0.2826 -7.1740 12 6 0.4803 1.6416 -7.0188 13 6 0.1008 2.4748 -8.2159 14 9 1.1079 2.3879 -9.1828 15 9 -1.1019 2.0013 -8.7512 16 7 0.6040 2.2191 -5.8391 17 6 0.9394 1.5380 -4.7631 18 6 3.5675 -0.8471 -1.1715 19 6 3.9570 -1.6656 0.0615 20 6 3.4650 -0.9484 1.3227 21 7 2.0225 -0.7009 1.1936 22 6 1.1537 -1.1153 2.1677 23 1 0.1358 -1.3693 1.9108 24 6 1.5812 -1.2090 3.4849 25 7 2.7044 -0.6312 3.8550 26 14 0.5623 -2.1551 4.7325 27 1 -0.6461 -2.7065 4.0685 28 1 1.3716 -3.2683 5.2903 29 1 0.1519 -1.2430 5.8302 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3634 0.5182 0.8874 32 1 -0.3634 0.5094 -0.8926 33 1 1.5114 0.9847 -2.3830 34 1 1.2141 -1.5404 -6.1674 35 1 0.5781 -0.1789 -8.1443 36 1 -0.0211 3.5143 -7.9112 37 1 1.0359 2.0473 -3.8156 38 1 3.9374 -1.3431 -2.0689 39 1 4.0066 0.1481 -1.0997 40 1 5.0413 -1.7694 0.1017 41 1 3.4989 -2.6529 0.0024 42 1 3.9902 0.0005 1.4318 43 1 3.6518 -1.5743 2.1953 44 1 3.0032 -0.6970 4.7754 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993408677.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:54 Heat of formation + Delta-G solvation = -98.235910 kcal Electronic energy + Delta-G solvation = -29238.016887 eV Core-core repulsion = 24825.759758 eV Total energy + Delta-G solvation = -4412.257130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -50.10378 -48.09470 -41.90266 -40.62392 -39.15496 -36.01991 -34.46152 -33.95115 -33.57247 -33.08730 -30.96243 -28.52028 -27.62033 -26.82949 -25.03719 -24.60242 -23.39794 -22.34247 -21.71462 -21.12516 -19.34514 -18.78048 -18.54268 -18.34057 -18.22194 -17.53150 -17.02871 -16.46713 -16.25650 -16.13675 -15.74873 -15.58105 -15.39079 -15.17566 -14.94070 -14.74091 -14.54567 -14.46178 -14.41946 -14.32177 -14.23091 -13.56551 -13.34326 -13.24660 -12.83633 -12.71504 -12.51046 -12.37593 -12.36667 -11.99588 -11.82993 -11.77911 -11.67136 -11.39513 -11.19373 -11.12480 -10.74451 -10.55930 -10.52421 -10.06988 -8.65036 -7.84996 -5.30699 -0.77027 -0.02610 1.45990 1.49473 1.58018 1.60259 1.93167 2.17555 2.52680 2.53918 3.12757 3.24094 3.30995 3.46389 3.59143 3.62464 3.71007 3.84387 3.90558 3.93676 4.03189 4.12264 4.21597 4.36459 4.41345 4.51862 4.62698 4.68967 4.77833 4.86165 4.89348 4.92877 5.04697 5.14159 5.18902 5.21643 5.28055 5.44520 5.47997 5.60052 5.71875 5.78556 6.40629 6.42947 6.46919 7.08274 7.17752 7.87758 8.38261 9.21901 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.025906 B = 0.002244 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.567581 B =12474.378737 C =12853.047766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.164 3.836 3 H 0.038 0.962 4 C 0.147 3.853 5 H 0.062 0.938 6 N -0.697 5.697 7 C 0.563 3.437 8 O -0.570 6.570 9 C -0.170 4.170 10 C -0.020 4.020 11 C -0.138 4.138 12 C 0.060 3.940 13 C 0.327 3.673 14 F -0.198 7.198 15 F -0.198 7.198 16 N -0.467 5.467 17 C 0.142 3.858 18 C -0.110 4.110 19 C -0.130 4.130 20 C 0.174 3.826 21 N -0.600 5.600 22 C -0.250 4.250 23 H 0.073 0.927 24 C -0.049 4.049 25 N -0.933 5.933 26 Si 0.959 3.041 27 H -0.268 1.268 28 H -0.294 1.294 29 H -0.293 1.293 30 H 0.040 0.960 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.413 0.587 34 H 0.157 0.843 35 H 0.168 0.832 36 H 0.161 0.839 37 H 0.194 0.806 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.044 0.956 42 H 0.005 0.995 43 H 0.055 0.945 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.506 7.286 -23.549 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.057 3.943 3 H 0.056 0.944 4 C 0.040 3.960 5 H 0.080 0.920 6 N -0.348 5.348 7 C 0.349 3.651 8 O -0.450 6.450 9 C -0.175 4.175 10 C -0.047 4.047 11 C -0.158 4.158 12 C -0.078 4.078 13 C 0.273 3.727 14 F -0.179 7.179 15 F -0.179 7.179 16 N -0.175 5.175 17 C -0.017 4.017 18 C -0.149 4.149 19 C -0.170 4.170 20 C 0.049 3.951 21 N -0.324 5.324 22 C -0.380 4.380 23 H 0.091 0.909 24 C -0.245 4.245 25 N -0.580 5.580 26 Si 0.788 3.212 27 H -0.193 1.193 28 H -0.221 1.221 29 H -0.220 1.220 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.251 0.749 34 H 0.175 0.825 35 H 0.185 0.815 36 H 0.178 0.822 37 H 0.210 0.790 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.023 0.977 43 H 0.073 0.927 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.485 7.343 -23.392 24.764 hybrid contribution -0.070 -1.278 1.103 1.690 sum -3.554 6.065 -22.288 23.371 Atomic orbital electron populations 1.21761 0.94439 1.01129 1.01442 1.20730 0.94287 0.93655 0.85600 0.94419 1.21385 0.95052 0.95662 0.83874 0.91980 1.45817 1.68996 1.12883 1.07103 1.18242 0.76792 0.86642 0.83397 1.90786 1.52029 1.16190 1.86015 1.21083 1.05538 0.96132 0.94743 1.21921 0.90506 1.01930 0.90296 1.22129 0.98615 0.93783 1.01259 1.22035 0.98477 0.93087 0.94220 1.20318 0.72091 1.00190 0.80151 1.93030 1.61494 1.97670 1.65699 1.93034 1.46402 1.91074 1.87410 1.67310 1.11997 1.39879 0.98357 1.23323 0.91139 0.89457 0.97739 1.21694 0.95160 1.00545 0.97464 1.22021 1.00327 0.98777 0.95830 1.20658 0.83141 0.96226 0.95087 1.44276 1.03151 1.65800 1.19173 1.19477 0.95116 1.36698 0.86717 0.90938 1.25734 0.99002 1.01028 0.98694 1.70162 1.24851 1.46193 1.16747 0.85328 0.78554 0.78046 0.79271 1.19274 1.22115 1.21977 0.94118 0.93181 0.90471 0.74907 0.82500 0.81478 0.82207 0.78957 0.92490 0.91293 0.90981 0.93721 0.97683 0.92670 0.94268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 7.84 71.98 0.56 -3.80 16 2 C 0.16 6.02 3.03 44.97 0.14 6.16 16 3 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 4 C 0.15 4.76 1.99 45.07 0.09 4.85 16 5 H 0.06 2.41 7.58 -2.39 -0.02 2.39 16 6 N -0.70 -16.70 4.53 -445.04 -2.02 -18.71 16 7 C 0.56 14.46 7.75 86.79 0.67 15.13 16 8 O -0.57 -19.37 16.08 -3.85 -0.06 -19.43 16 9 C -0.17 -3.30 5.89 -19.99 -0.12 -3.42 16 10 C -0.02 -0.36 9.72 22.73 0.22 -0.13 16 11 C -0.14 -2.04 9.60 22.33 0.21 -1.82 16 12 C 0.06 0.92 6.28 42.57 0.27 1.19 16 13 C 0.33 3.93 5.54 71.24 0.39 4.32 16 14 F -0.20 -2.85 17.25 44.97 0.78 -2.08 16 15 F -0.20 -2.89 17.25 44.97 0.78 -2.11 16 16 N -0.47 -7.65 10.23 -182.82 -1.87 -9.52 16 17 C 0.14 2.23 10.71 85.02 0.91 3.14 16 18 C -0.11 -3.57 5.46 30.62 0.17 -3.40 16 19 C -0.13 -4.87 6.08 30.67 0.19 -4.69 16 20 C 0.17 8.11 5.29 86.37 0.46 8.56 16 21 N -0.60 -28.29 2.99 -675.23 -2.02 -30.31 16 22 C -0.25 -13.03 8.61 84.03 0.72 -12.31 16 23 H 0.07 3.69 6.20 -2.91 -0.02 3.67 16 24 C -0.05 -2.67 4.96 84.86 0.42 -2.25 16 25 N -0.93 -53.59 11.14 21.65 0.24 -53.35 16 26 Si 0.96 44.15 29.58 68.60 2.03 46.18 16 27 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 28 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 29 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 30 H 0.04 1.47 7.40 -2.38 -0.02 1.46 16 31 H 0.05 1.82 7.66 -2.39 -0.02 1.81 16 32 H 0.08 1.95 7.79 -2.38 -0.02 1.93 16 33 H 0.41 7.08 6.67 -92.71 -0.62 6.46 16 34 H 0.16 2.71 7.74 -2.91 -0.02 2.69 16 35 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.16 1.10 8.10 -2.38 -0.02 1.08 16 37 H 0.19 1.91 6.42 -2.91 -0.02 1.89 16 38 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 40 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.05 2.95 6.06 -2.39 -0.01 2.93 16 44 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -67.55 365.94 3.59 -63.96 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.43 Total: 13.86 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 5.31 Total: 11.52 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -5.66 Total: -111.89 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.06 Total: -19.43 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 1.55 Total: -4.19 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -67.55 3.59 -63.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993408677.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.277 kcal (2) G-P(sol) polarization free energy of solvation -67.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds