Wall clock time and date at job start Wed Apr 1 2020 00:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.58502 * 2 1 4 4 C 1.53192 * 109.58920 * 239.57182 * 2 1 3 5 5 H 1.09000 * 109.49489 * 65.62476 * 4 2 1 6 6 N 1.46502 * 109.49643 * 305.52649 * 4 2 1 7 7 C 1.34776 * 119.99718 * 154.99703 * 6 4 2 8 8 O 1.21544 * 120.00333 * 0.02562 * 7 6 4 9 9 C 1.47845 * 119.99865 * 179.97438 * 7 6 4 10 10 C 1.40022 * 120.56064 * 180.02562 * 9 7 6 11 11 C 1.38349 * 118.29016 * 180.02562 * 10 9 7 12 12 C 1.38352 * 119.30654 * 0.02562 * 11 10 9 13 13 C 1.50694 * 119.46422 * 179.97438 * 12 11 10 14 14 F 1.39902 * 109.47599 * 209.99890 * 13 12 11 15 15 F 1.39897 * 109.47271 * 330.00816 * 13 12 11 16 16 N 1.31923 * 121.07472 * 359.97438 * 12 11 10 17 17 C 1.31702 * 121.88293 * 359.74379 * 16 12 11 18 18 C 1.53037 * 109.31185 * 185.57833 * 4 2 1 19 19 C 1.53039 * 109.54049 * 61.36710 * 18 4 2 20 20 C 1.53199 * 109.31069 * 298.63103 * 19 18 4 21 21 N 1.46926 * 108.77118 * 54.63555 * 20 19 18 22 22 C 1.36940 * 120.62718 * 126.41432 * 21 20 19 23 23 H 1.08002 * 119.99715 * 209.00626 * 22 21 20 24 24 C 1.38814 * 120.00249 * 29.00267 * 22 21 20 25 25 N 1.31612 * 119.99931 * 15.02779 * 24 22 21 26 26 Si 1.86801 * 120.00047 * 195.02974 * 24 22 21 27 27 H 1.48501 * 109.47104 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47119 * 119.99713 * 26 24 22 29 29 H 1.48497 * 109.46922 * 239.99906 * 26 24 22 30 30 H 1.08991 * 109.47346 * 299.71596 * 1 2 3 31 31 H 1.08995 * 109.47205 * 59.72462 * 1 2 3 32 32 H 1.09002 * 109.46826 * 179.71474 * 1 2 3 33 33 H 0.97001 * 120.00364 * 335.00267 * 6 4 2 34 34 H 1.08007 * 120.85485 * 359.97438 * 10 9 7 35 35 H 1.08011 * 120.34799 * 180.02562 * 11 10 9 36 36 H 1.09003 * 109.47097 * 89.99869 * 13 12 11 37 37 H 1.08001 * 119.71751 * 180.27262 * 17 16 12 38 38 H 1.08997 * 109.45885 * 301.34012 * 18 4 2 39 39 H 1.08999 * 109.45887 * 181.38576 * 18 4 2 40 40 H 1.08995 * 109.49709 * 178.68536 * 19 18 4 41 41 H 1.08998 * 109.49996 * 58.58339 * 19 18 4 42 42 H 1.08992 * 109.58657 * 174.42111 * 20 19 18 43 43 H 1.08995 * 109.58819 * 294.85225 * 20 19 18 44 44 H 0.97000 * 120.00190 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7309 -1.2445 5 1 1.7661 -0.1695 -2.1366 6 7 1.4515 -2.0696 -1.3044 7 6 1.3285 -2.6996 -2.4896 8 8 1.7092 -2.1573 -3.5085 9 6 0.7315 -4.0508 -2.5500 10 6 0.5986 -4.7162 -3.7749 11 6 0.0328 -5.9787 -3.7771 12 6 -0.3800 -6.5379 -2.5809 13 6 -0.9972 -7.9127 -2.5793 14 9 -1.9126 -8.0118 -1.5260 15 9 -1.6580 -8.1286 -3.7933 16 7 -0.2421 -5.8873 -1.4416 17 6 0.2951 -4.6861 -1.3871 18 6 3.5675 -0.8494 -1.1690 19 6 3.9570 -1.6656 0.0657 20 6 3.4651 -0.9452 1.3250 21 7 2.0226 -0.6980 1.1954 22 6 1.1538 -1.1099 2.1704 23 1 0.1360 -1.3647 1.9142 24 6 1.5812 -1.2001 3.4880 25 7 2.7043 -0.6214 3.8566 26 14 0.5623 -2.1428 4.7381 27 1 -0.6461 -2.6961 4.0755 28 1 1.3714 -3.2546 5.2989 29 1 0.1518 -1.2278 5.8332 30 1 -0.3633 0.5094 0.8924 31 1 -0.3633 0.5181 -0.8875 32 1 -0.3633 -1.0277 -0.0051 33 1 1.1479 -2.5026 -0.4912 34 1 0.9284 -4.2553 -4.6943 35 1 -0.0853 -6.5221 -4.7031 36 1 -0.2155 -8.6618 -2.4531 37 1 0.3950 -4.1870 -0.4346 38 1 4.0061 0.1460 -1.0995 39 1 3.9379 -1.3474 -2.0650 40 1 5.0412 -1.7693 0.1060 41 1 3.4984 -2.6528 0.0087 42 1 3.6518 -1.5688 2.1992 43 1 3.9903 0.0039 1.4318 44 1 3.0029 -0.6841 4.7774 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993408686.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:00 Heat of formation + Delta-G solvation = -77.769440 kcal Electronic energy + Delta-G solvation = -30161.197676 eV Core-core repulsion = 25749.828039 eV Total energy + Delta-G solvation = -4411.369637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.30363 -47.30067 -40.86230 -39.46061 -37.63697 -34.15230 -33.09827 -32.75864 -32.26626 -31.61294 -29.53371 -27.44761 -26.23407 -25.08544 -24.12554 -23.38378 -22.02901 -20.98610 -20.56571 -18.91890 -18.39242 -17.88301 -17.77979 -17.44056 -16.61764 -16.24966 -15.41830 -15.26741 -15.11313 -14.84470 -14.53384 -14.16920 -14.11950 -13.93648 -13.66895 -13.57062 -13.41967 -13.20926 -13.15914 -13.04404 -12.85294 -12.62251 -11.92909 -11.63607 -11.35998 -11.31997 -11.03449 -10.76031 -10.71588 -10.57371 -10.26353 -10.25640 -10.15647 -10.06768 -9.75244 -9.63422 -9.56165 -9.38063 -8.69052 -8.54013 -6.75809 -5.87567 -3.33622 0.20381 0.86781 2.70925 3.03216 3.30729 3.31454 3.40970 3.41196 3.56643 3.73986 3.95710 4.39967 4.41435 4.51297 4.53788 4.74762 4.80937 4.92618 5.20524 5.25153 5.26388 5.47624 5.49768 5.60828 5.65597 5.77109 5.87491 6.02421 6.11441 6.13933 6.23351 6.33186 6.44685 6.55166 6.59612 6.69434 6.85162 6.87149 6.97596 7.31285 7.40324 7.60658 7.71723 7.77491 8.33392 8.35942 9.11362 9.74111 10.30519 11.20140 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.003699 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.699707 B = 7568.080318 C = 9314.438066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.158 3.842 3 H 0.042 0.958 4 C 0.134 3.866 5 H 0.079 0.921 6 N -0.690 5.690 7 C 0.555 3.445 8 O -0.545 6.545 9 C -0.162 4.162 10 C -0.018 4.018 11 C -0.150 4.150 12 C 0.063 3.937 13 C 0.327 3.673 14 F -0.184 7.184 15 F -0.195 7.195 16 N -0.455 5.455 17 C 0.141 3.859 18 C -0.121 4.121 19 C -0.141 4.141 20 C 0.170 3.830 21 N -0.587 5.587 22 C -0.259 4.259 23 H 0.072 0.928 24 C 0.008 3.992 25 N -0.899 5.899 26 Si 0.898 3.102 27 H -0.276 1.276 28 H -0.289 1.289 29 H -0.291 1.291 30 H 0.065 0.935 31 H 0.040 0.960 32 H 0.052 0.948 33 H 0.409 0.591 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.132 0.868 37 H 0.173 0.827 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.089 0.911 43 H 0.018 0.982 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.922 -10.279 -13.931 17.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.051 3.949 3 H 0.059 0.941 4 C 0.028 3.972 5 H 0.097 0.903 6 N -0.340 5.340 7 C 0.340 3.660 8 O -0.424 6.424 9 C -0.167 4.167 10 C -0.045 4.045 11 C -0.170 4.170 12 C -0.076 4.076 13 C 0.273 3.727 14 F -0.165 7.165 15 F -0.176 7.176 16 N -0.163 5.163 17 C -0.018 4.018 18 C -0.160 4.160 19 C -0.180 4.180 20 C 0.045 3.955 21 N -0.311 5.311 22 C -0.389 4.389 23 H 0.089 0.911 24 C -0.191 4.191 25 N -0.542 5.542 26 Si 0.728 3.272 27 H -0.201 1.201 28 H -0.216 1.216 29 H -0.217 1.217 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.246 0.754 34 H 0.172 0.828 35 H 0.168 0.832 36 H 0.149 0.851 37 H 0.190 0.810 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.107 0.893 43 H 0.037 0.963 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.915 -10.256 -13.663 17.331 hybrid contribution -0.330 -0.211 0.425 0.578 sum -3.245 -10.467 -13.238 17.185 Atomic orbital electron populations 1.21799 0.95584 1.01397 1.00673 1.20730 0.93384 0.94022 0.86757 0.94054 1.21630 0.93060 0.82390 1.00164 0.90283 1.45973 1.60647 1.18795 1.08625 1.17934 0.79169 0.84552 0.84339 1.90746 1.50528 1.66891 1.34245 1.21328 1.02879 0.97038 0.95447 1.21737 0.91846 0.92589 0.98297 1.21825 0.99678 0.96436 0.99026 1.21853 0.98690 0.96499 0.90598 1.20093 0.86452 0.94411 0.71769 1.93055 1.69389 1.97031 1.57044 1.93016 1.83320 1.95615 1.45642 1.67333 1.12689 1.08654 1.27626 1.23180 0.90647 0.89613 0.98329 1.21775 0.95202 1.00679 0.98315 1.22153 0.99064 0.99470 0.97315 1.20829 0.83066 0.97256 0.94372 1.44205 1.03179 1.64964 1.18727 1.19196 0.94844 1.38524 0.86310 0.91062 1.25089 0.97644 0.99390 0.96992 1.70019 1.23189 1.44134 1.16884 0.86296 0.79757 0.79518 0.81632 1.20107 1.21559 1.21743 0.91586 0.94115 0.92917 0.75360 0.82762 0.83234 0.85118 0.81038 0.91685 0.93079 0.93345 0.92962 0.89324 0.96348 0.93627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 7.73 37.16 0.29 -2.06 16 2 C 0.16 2.95 3.20 -67.60 -0.22 2.73 16 3 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.13 2.22 2.33 -67.81 -0.16 2.06 16 5 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 6 N -0.69 -10.71 3.41 -54.63 -0.19 -10.90 16 7 C 0.56 8.47 7.75 -12.33 -0.10 8.37 16 8 O -0.54 -9.61 16.08 5.33 0.09 -9.52 16 9 C -0.16 -2.10 5.89 -104.82 -0.62 -2.72 16 10 C -0.02 -0.20 9.72 -38.87 -0.38 -0.58 16 11 C -0.15 -1.41 9.42 -39.50 -0.37 -1.78 16 12 C 0.06 0.68 6.58 -82.51 -0.54 0.14 16 13 C 0.33 2.91 5.72 36.00 0.21 3.12 16 14 F -0.18 -2.17 17.05 2.25 0.04 -2.13 16 15 F -0.19 -1.77 16.45 2.25 0.04 -1.73 16 16 N -0.45 -5.98 9.94 -9.14 -0.09 -6.07 16 17 C 0.14 1.83 10.71 -17.13 -0.18 1.64 16 18 C -0.12 -2.02 5.58 -26.69 -0.15 -2.16 16 19 C -0.14 -2.52 5.93 -26.61 -0.16 -2.68 16 20 C 0.17 3.71 5.29 -3.71 -0.02 3.69 16 21 N -0.59 -12.84 2.65 -164.77 -0.44 -13.27 16 22 C -0.26 -6.25 8.60 -15.06 -0.13 -6.38 16 23 H 0.07 1.67 6.21 -52.49 -0.33 1.34 16 24 C 0.01 0.21 4.96 -17.43 -0.09 0.12 16 25 N -0.90 -24.43 11.14 55.49 0.62 -23.81 16 26 Si 0.90 20.43 29.58 -169.99 -5.03 15.40 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 29 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 30 H 0.07 1.23 7.62 -51.93 -0.40 0.83 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.89 6.40 -51.93 -0.33 0.56 16 33 H 0.41 6.42 5.84 -40.82 -0.24 6.18 16 34 H 0.15 1.53 7.74 -52.48 -0.41 1.12 16 35 H 0.15 0.99 7.59 -52.48 -0.40 0.59 16 36 H 0.13 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.17 2.15 6.42 -52.49 -0.34 1.81 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.94 7.53 -51.93 -0.39 0.55 16 42 H 0.09 2.19 6.06 -51.93 -0.31 1.88 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 361.28 15.07 5.44 5.44 Total: -1.00 -29.23 361.28 -7.76 -36.99 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.63 Total: 6.09 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -2.61 Total: 3.52 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.10 Total: -54.06 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.08 Total: -3.86 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.23 -7.76 -36.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993408686.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.778 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds