Wall clock time and date at job start Wed Apr 1 2020 00:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.58502 * 2 1 4 4 C 1.53192 * 109.58920 * 239.57182 * 2 1 3 5 5 H 1.09000 * 109.49489 * 65.62476 * 4 2 1 6 6 N 1.46502 * 109.49643 * 305.52649 * 4 2 1 7 7 C 1.34776 * 119.99718 * 154.99703 * 6 4 2 8 8 O 1.21544 * 120.00333 * 0.02562 * 7 6 4 9 9 C 1.47845 * 119.99865 * 179.97438 * 7 6 4 10 10 C 1.40022 * 120.56064 * 180.02562 * 9 7 6 11 11 C 1.38349 * 118.29016 * 180.02562 * 10 9 7 12 12 C 1.38352 * 119.30654 * 0.02562 * 11 10 9 13 13 C 1.50694 * 119.46422 * 179.97438 * 12 11 10 14 14 F 1.39902 * 109.47599 * 209.99890 * 13 12 11 15 15 F 1.39897 * 109.47271 * 330.00816 * 13 12 11 16 16 N 1.31923 * 121.07472 * 359.97438 * 12 11 10 17 17 C 1.31702 * 121.88293 * 359.74379 * 16 12 11 18 18 C 1.53037 * 109.31185 * 185.57833 * 4 2 1 19 19 C 1.53039 * 109.54049 * 61.36710 * 18 4 2 20 20 C 1.53199 * 109.31069 * 298.63103 * 19 18 4 21 21 N 1.46926 * 108.77118 * 54.63555 * 20 19 18 22 22 C 1.36940 * 120.62718 * 126.41432 * 21 20 19 23 23 H 1.08002 * 119.99715 * 209.00626 * 22 21 20 24 24 C 1.38814 * 120.00249 * 29.00267 * 22 21 20 25 25 N 1.31612 * 119.99931 * 15.02779 * 24 22 21 26 26 Si 1.86801 * 120.00047 * 195.02974 * 24 22 21 27 27 H 1.48501 * 109.47104 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47119 * 119.99713 * 26 24 22 29 29 H 1.48497 * 109.46922 * 239.99906 * 26 24 22 30 30 H 1.08991 * 109.47346 * 299.71596 * 1 2 3 31 31 H 1.08995 * 109.47205 * 59.72462 * 1 2 3 32 32 H 1.09002 * 109.46826 * 179.71474 * 1 2 3 33 33 H 0.97001 * 120.00364 * 335.00267 * 6 4 2 34 34 H 1.08007 * 120.85485 * 359.97438 * 10 9 7 35 35 H 1.08011 * 120.34799 * 180.02562 * 11 10 9 36 36 H 1.09003 * 109.47097 * 89.99869 * 13 12 11 37 37 H 1.08001 * 119.71751 * 180.27262 * 17 16 12 38 38 H 1.08997 * 109.45885 * 301.34012 * 18 4 2 39 39 H 1.08999 * 109.45887 * 181.38576 * 18 4 2 40 40 H 1.08995 * 109.49709 * 178.68536 * 19 18 4 41 41 H 1.08998 * 109.49996 * 58.58339 * 19 18 4 42 42 H 1.08992 * 109.58657 * 174.42111 * 20 19 18 43 43 H 1.08995 * 109.58819 * 294.85225 * 20 19 18 44 44 H 0.97000 * 120.00190 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7309 -1.2445 5 1 1.7661 -0.1695 -2.1366 6 7 1.4515 -2.0696 -1.3044 7 6 1.3285 -2.6996 -2.4896 8 8 1.7092 -2.1573 -3.5085 9 6 0.7315 -4.0508 -2.5500 10 6 0.5986 -4.7162 -3.7749 11 6 0.0328 -5.9787 -3.7771 12 6 -0.3800 -6.5379 -2.5809 13 6 -0.9972 -7.9127 -2.5793 14 9 -1.9126 -8.0118 -1.5260 15 9 -1.6580 -8.1286 -3.7933 16 7 -0.2421 -5.8873 -1.4416 17 6 0.2951 -4.6861 -1.3871 18 6 3.5675 -0.8494 -1.1690 19 6 3.9570 -1.6656 0.0657 20 6 3.4651 -0.9452 1.3250 21 7 2.0226 -0.6980 1.1954 22 6 1.1538 -1.1099 2.1704 23 1 0.1360 -1.3647 1.9142 24 6 1.5812 -1.2001 3.4880 25 7 2.7043 -0.6214 3.8566 26 14 0.5623 -2.1428 4.7381 27 1 -0.6461 -2.6961 4.0755 28 1 1.3714 -3.2546 5.2989 29 1 0.1518 -1.2278 5.8332 30 1 -0.3633 0.5094 0.8924 31 1 -0.3633 0.5181 -0.8875 32 1 -0.3633 -1.0277 -0.0051 33 1 1.1479 -2.5026 -0.4912 34 1 0.9284 -4.2553 -4.6943 35 1 -0.0853 -6.5221 -4.7031 36 1 -0.2155 -8.6618 -2.4531 37 1 0.3950 -4.1870 -0.4346 38 1 4.0061 0.1460 -1.0995 39 1 3.9379 -1.3474 -2.0650 40 1 5.0412 -1.7693 0.1060 41 1 3.4984 -2.6528 0.0087 42 1 3.6518 -1.5688 2.1992 43 1 3.9903 0.0039 1.4318 44 1 3.0029 -0.6841 4.7774 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993408686.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:58 Heat of formation + Delta-G solvation = -94.028868 kcal Electronic energy + Delta-G solvation = -30161.902738 eV Core-core repulsion = 25749.828039 eV Total energy + Delta-G solvation = -4412.074699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -50.02819 -48.04857 -41.88186 -40.67360 -39.06731 -35.69541 -34.30709 -33.83206 -33.58027 -33.01727 -31.09367 -28.45305 -27.64097 -26.81966 -25.04826 -24.41823 -23.47730 -22.40886 -21.87474 -20.36522 -19.37398 -18.70066 -18.54581 -18.39147 -18.18233 -17.34893 -16.99494 -16.38445 -16.29144 -16.12236 -15.78500 -15.55637 -15.28447 -14.99894 -14.88226 -14.62776 -14.56914 -14.43179 -14.30463 -14.16899 -14.12054 -13.65950 -13.54197 -12.96079 -12.89935 -12.73395 -12.44034 -12.36246 -12.31209 -12.18883 -11.90246 -11.67094 -11.39762 -11.32424 -11.14740 -11.02215 -10.66526 -10.49876 -10.45953 -9.96719 -8.60913 -7.81100 -5.27325 -0.70621 0.01486 1.48388 1.53595 1.60203 1.65772 2.10527 2.29148 2.54075 2.59370 3.08766 3.18411 3.35869 3.56166 3.59261 3.64713 3.73413 3.85804 4.00639 4.01368 4.06658 4.14581 4.21773 4.39983 4.45601 4.57393 4.66537 4.70591 4.79514 4.91004 4.94954 5.00650 5.04701 5.12723 5.22456 5.26904 5.35169 5.45261 5.54869 5.61030 5.75782 5.82340 6.45186 6.49954 6.55392 7.11855 7.21108 7.90695 8.42978 9.25358 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.003699 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.699707 B = 7568.080318 C = 9314.438066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.156 3.844 3 H 0.035 0.965 4 C 0.143 3.857 5 H 0.086 0.914 6 N -0.690 5.690 7 C 0.561 3.439 8 O -0.569 6.569 9 C -0.175 4.175 10 C -0.016 4.016 11 C -0.135 4.135 12 C 0.057 3.943 13 C 0.326 3.674 14 F -0.203 7.203 15 F -0.194 7.194 16 N -0.480 5.480 17 C 0.136 3.864 18 C -0.115 4.115 19 C -0.127 4.127 20 C 0.178 3.822 21 N -0.597 5.597 22 C -0.245 4.245 23 H 0.081 0.919 24 C -0.046 4.046 25 N -0.934 5.934 26 Si 0.953 3.047 27 H -0.263 1.263 28 H -0.296 1.296 29 H -0.301 1.301 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.408 0.592 34 H 0.166 0.834 35 H 0.184 0.816 36 H 0.174 0.826 37 H 0.168 0.832 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.056 0.944 43 H -0.005 1.005 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.784 -11.905 -16.280 20.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.050 3.950 3 H 0.052 0.948 4 C 0.037 3.963 5 H 0.104 0.896 6 N -0.340 5.340 7 C 0.348 3.652 8 O -0.450 6.450 9 C -0.180 4.180 10 C -0.042 4.042 11 C -0.155 4.155 12 C -0.082 4.082 13 C 0.272 3.728 14 F -0.184 7.184 15 F -0.175 7.175 16 N -0.188 5.188 17 C -0.023 4.023 18 C -0.154 4.154 19 C -0.166 4.166 20 C 0.052 3.948 21 N -0.321 5.321 22 C -0.375 4.375 23 H 0.098 0.902 24 C -0.241 4.241 25 N -0.581 5.581 26 Si 0.783 3.217 27 H -0.187 1.187 28 H -0.224 1.224 29 H -0.228 1.228 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.246 0.754 34 H 0.184 0.816 35 H 0.201 0.799 36 H 0.191 0.809 37 H 0.185 0.815 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.013 0.987 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.803 -11.894 -16.042 20.330 hybrid contribution -0.092 0.283 1.052 1.093 sum -3.895 -11.611 -14.991 19.357 Atomic orbital electron populations 1.21725 0.94325 1.01673 1.01021 1.20855 0.94442 0.93590 0.86149 0.94788 1.21409 0.92989 0.82942 0.98985 0.89575 1.45920 1.60745 1.18393 1.08933 1.18165 0.78419 0.85101 0.83561 1.90730 1.51694 1.67720 1.34847 1.21139 1.04266 0.96129 0.96457 1.21954 0.91325 0.93034 0.97878 1.22131 0.97851 0.95673 0.99800 1.22319 0.98164 0.97193 0.90490 1.20507 0.86752 0.94380 0.71123 1.93017 1.70261 1.97060 1.58101 1.93017 1.83461 1.95521 1.45543 1.67328 1.13533 1.08880 1.29100 1.23098 0.91064 0.89874 0.98261 1.21724 0.95272 1.00727 0.97636 1.21958 0.99775 0.98995 0.95845 1.20601 0.83223 0.95847 0.95094 1.44371 1.02982 1.65516 1.19232 1.19512 0.95228 1.36307 0.86501 0.90173 1.25695 0.98726 1.00960 0.98724 1.70163 1.24970 1.46367 1.16579 0.85421 0.78843 0.77944 0.79536 1.18734 1.22369 1.22837 0.93347 0.91620 0.92655 0.75440 0.81629 0.79892 0.80918 0.81507 0.91234 0.92306 0.91995 0.92961 0.92545 0.98689 0.94495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 7.73 71.98 0.56 -3.74 16 2 C 0.16 5.70 3.20 44.98 0.14 5.85 16 3 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 4 C 0.14 4.55 2.33 45.07 0.10 4.66 16 5 H 0.09 2.69 7.58 -2.39 -0.02 2.67 16 6 N -0.69 -20.55 3.41 -445.05 -1.52 -22.07 16 7 C 0.56 16.23 7.75 86.79 0.67 16.91 16 8 O -0.57 -19.02 16.08 -3.85 -0.06 -19.09 16 9 C -0.17 -4.25 5.89 -19.99 -0.12 -4.36 16 10 C -0.02 -0.30 9.72 22.73 0.22 -0.08 16 11 C -0.14 -2.09 9.42 22.32 0.21 -1.88 16 12 C 0.06 1.09 6.58 42.57 0.28 1.37 16 13 C 0.33 4.83 5.72 71.23 0.41 5.24 16 14 F -0.20 -4.41 17.05 44.97 0.77 -3.65 16 15 F -0.19 -2.90 16.45 44.97 0.74 -2.16 16 16 N -0.48 -11.89 9.94 -182.82 -1.82 -13.71 16 17 C 0.14 3.37 10.71 85.02 0.91 4.28 16 18 C -0.12 -3.67 5.58 30.62 0.17 -3.50 16 19 C -0.13 -4.46 5.93 30.67 0.18 -4.28 16 20 C 0.18 7.92 5.29 86.36 0.46 8.38 16 21 N -0.60 -26.25 2.65 -675.23 -1.79 -28.04 16 22 C -0.25 -11.86 8.60 84.03 0.72 -11.13 16 23 H 0.08 3.69 6.21 -2.91 -0.02 3.67 16 24 C -0.05 -2.36 4.96 84.86 0.42 -1.94 16 25 N -0.93 -52.49 11.14 21.65 0.24 -52.25 16 26 Si 0.95 42.70 29.58 68.60 2.03 44.73 16 27 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 28 H -0.30 -13.52 7.11 99.48 0.71 -12.82 16 29 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 30 H 0.05 1.76 7.62 -2.39 -0.02 1.74 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 1.79 6.40 -2.39 -0.02 1.77 16 33 H 0.41 12.47 5.84 -92.71 -0.54 11.92 16 34 H 0.17 2.81 7.74 -2.91 -0.02 2.78 16 35 H 0.18 1.57 7.59 -2.90 -0.02 1.55 16 36 H 0.17 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.17 4.13 6.42 -2.91 -0.02 4.11 16 38 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.05 1.84 7.53 -2.39 -0.02 1.83 16 42 H 0.06 2.89 6.06 -2.39 -0.01 2.88 16 43 H -0.01 -0.24 8.14 -2.39 -0.02 -0.26 16 44 H 0.25 13.62 8.31 -92.71 -0.77 12.84 16 Total: -1.00 -63.59 361.28 4.44 -59.15 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.51 Total: 21.32 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 5.34 Total: 15.76 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -4.88 Total: -116.06 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.06 Total: -19.09 kcal Atomic # 9 Polarization: -7.31 SS G_CDS: 1.51 Total: -5.80 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -63.59 4.44 -59.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993408686.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.877 kcal (2) G-P(sol) polarization free energy of solvation -63.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds