Wall clock time and date at job start Wed Apr 1 2020 00:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.58313 * 2 1 4 4 C 1.53191 * 109.58689 * 120.28561 * 2 1 3 5 5 H 1.08992 * 109.49756 * 54.47246 * 4 2 1 6 6 N 1.46497 * 109.49448 * 294.37173 * 4 2 1 7 7 C 1.34780 * 119.99504 * 155.00286 * 6 4 2 8 8 O 1.21552 * 120.00354 * 0.02562 * 7 6 4 9 9 C 1.47840 * 120.00054 * 179.97438 * 7 6 4 10 10 C 1.40023 * 120.56075 * 328.50094 * 9 7 6 11 11 C 1.38352 * 118.29123 * 180.02562 * 10 9 7 12 12 C 1.38352 * 119.30443 * 359.97438 * 11 10 9 13 13 N 1.31927 * 121.07661 * 0.03584 * 12 11 10 14 14 C 1.31697 * 121.88105 * 359.64637 * 13 12 11 15 15 C 1.50701 * 119.71732 * 180.32047 * 14 13 12 16 16 F 1.39901 * 109.47029 * 14.18955 * 15 14 13 17 17 F 1.39899 * 109.47002 * 134.18374 * 15 14 13 18 18 C 1.53079 * 109.28974 * 174.28211 * 4 2 1 19 19 C 1.53039 * 109.65883 * 298.84517 * 18 4 2 20 20 C 1.53190 * 109.31401 * 61.30082 * 19 18 4 21 21 N 1.46924 * 108.77615 * 305.36823 * 20 19 18 22 22 C 1.36933 * 120.62815 * 233.62730 * 21 20 19 23 23 H 1.08004 * 120.00184 * 150.31661 * 22 21 20 24 24 C 1.38813 * 120.00042 * 330.31406 * 22 21 20 25 25 N 1.31623 * 120.00264 * 344.61550 * 24 22 21 26 26 Si 1.86809 * 120.00074 * 164.62166 * 24 22 21 27 27 H 1.48502 * 109.46652 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.46884 * 119.99894 * 26 24 22 29 29 H 1.48498 * 109.46832 * 239.99759 * 26 24 22 30 30 H 1.09000 * 109.47163 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47150 * 299.99804 * 1 2 3 32 32 H 1.08997 * 109.47564 * 59.99542 * 1 2 3 33 33 H 0.96996 * 120.00625 * 335.00148 * 6 4 2 34 34 H 1.08003 * 120.85089 * 0.02562 * 10 9 7 35 35 H 1.08003 * 120.35024 * 179.97438 * 11 10 9 36 36 H 1.07997 * 119.46158 * 180.02562 * 12 11 10 37 37 H 1.09000 * 109.47115 * 254.18445 * 15 14 13 38 38 H 1.09007 * 109.44752 * 178.75808 * 18 4 2 39 39 H 1.08995 * 109.34598 * 58.87619 * 18 4 2 40 40 H 1.09001 * 109.49599 * 301.34937 * 19 18 4 41 41 H 1.08997 * 109.52525 * 181.27150 * 19 18 4 42 42 H 1.09001 * 109.58756 * 185.57813 * 20 19 18 43 43 H 1.09008 * 109.58229 * 65.15344 * 20 19 18 44 44 H 0.96993 * 120.00286 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7279 1.2463 5 1 1.6030 -1.7237 1.2934 6 7 1.6705 0.0298 2.4434 7 6 1.5473 -0.6004 3.6284 8 8 1.7460 -1.7972 3.7039 9 6 1.1714 0.1641 4.8366 10 6 1.5568 1.5025 4.9807 11 6 1.1800 2.1732 6.1307 12 6 0.4413 1.5068 7.0920 13 7 0.0924 0.2449 6.9292 14 6 0.4216 -0.4341 5.8499 15 6 -0.0089 -1.8716 5.7113 16 9 -0.9922 -2.1578 6.6645 17 9 -0.5274 -2.0816 4.4290 18 6 3.5675 -0.8494 1.1689 19 6 3.9569 -1.6655 -0.0658 20 6 3.4650 -0.9452 -1.3251 21 7 2.0225 -0.6980 -1.1954 22 6 1.1536 -1.1107 -2.1700 23 1 0.1389 -1.3758 -1.9118 24 6 1.5769 -1.1882 -3.4897 25 7 2.6901 -0.5915 -3.8600 26 14 0.5664 -2.1393 -4.7404 27 1 -0.6319 -2.7120 -4.0759 28 1 0.1384 -1.2248 -5.8293 29 1 1.3891 -3.2365 -5.3100 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.5123 0.9848 2.3832 34 1 2.1333 1.9985 4.2139 35 1 1.4597 3.2062 6.2764 36 1 0.1455 2.0280 7.9905 37 1 0.8497 -2.5247 5.8675 38 1 3.9379 -1.3474 2.0651 39 1 4.0061 0.1461 1.0995 40 1 3.4984 -2.6527 -0.0087 41 1 5.0411 -1.7698 -0.1064 42 1 3.6517 -1.5688 -2.1993 43 1 3.9903 0.0040 -1.4318 44 1 2.9861 -0.6460 -4.7821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993563581.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:03 Heat of formation + Delta-G solvation = -75.487656 kcal Electronic energy + Delta-G solvation = -30428.130890 eV Core-core repulsion = 26016.860198 eV Total energy + Delta-G solvation = -4411.270692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.96433 -46.96841 -40.98226 -39.42719 -37.64477 -34.54339 -33.33166 -32.67939 -32.38668 -31.61801 -29.29400 -27.15125 -26.25243 -25.15310 -24.76228 -22.83658 -22.15104 -20.76051 -20.55442 -19.56486 -18.21191 -17.77845 -17.54918 -17.30815 -16.56884 -16.23307 -15.73179 -15.52911 -15.12405 -14.86804 -14.53277 -14.11560 -13.85752 -13.78546 -13.74993 -13.58072 -13.39194 -13.23846 -13.17084 -12.84835 -12.59252 -12.56781 -11.78618 -11.58564 -11.53173 -11.15112 -10.95769 -10.78558 -10.60247 -10.48297 -10.37475 -10.27497 -10.14479 -10.05304 -9.95979 -9.70068 -9.64490 -9.41458 -8.79144 -8.49422 -6.71046 -5.82857 -3.27650 0.18783 0.60898 2.62946 3.03641 3.15959 3.32205 3.35590 3.44186 3.46457 3.88358 4.14333 4.28885 4.34620 4.46382 4.54299 4.73953 4.91501 4.94676 5.00227 5.24894 5.34466 5.42684 5.46466 5.51786 5.54375 5.72184 5.89779 5.97159 6.01113 6.16240 6.28451 6.37061 6.46913 6.52858 6.63926 6.69810 6.77983 6.94253 7.01988 7.28587 7.35403 7.53213 7.62721 7.79770 8.16718 8.41470 9.16854 9.79123 10.35164 11.25869 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018514 B = 0.003020 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.003000 B = 9268.194963 C = 9756.755780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.027 0.973 4 C 0.130 3.870 5 H 0.091 0.909 6 N -0.705 5.705 7 C 0.559 3.441 8 O -0.526 6.526 9 C -0.147 4.147 10 C -0.046 4.046 11 C -0.160 4.160 12 C 0.117 3.883 13 N -0.457 5.457 14 C 0.102 3.898 15 C 0.329 3.671 16 F -0.191 7.191 17 F -0.180 7.180 18 C -0.116 4.116 19 C -0.140 4.140 20 C 0.170 3.830 21 N -0.581 5.581 22 C -0.253 4.253 23 H 0.071 0.929 24 C 0.005 3.995 25 N -0.902 5.902 26 Si 0.901 3.099 27 H -0.277 1.277 28 H -0.290 1.290 29 H -0.289 1.289 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.064 0.936 33 H 0.396 0.604 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.168 0.832 37 H 0.136 0.864 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.088 0.912 43 H 0.019 0.981 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.593 6.496 20.258 21.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.060 3.940 3 H 0.045 0.955 4 C 0.025 3.975 5 H 0.109 0.891 6 N -0.354 5.354 7 C 0.343 3.657 8 O -0.403 6.403 9 C -0.153 4.153 10 C -0.072 4.072 11 C -0.180 4.180 12 C -0.040 4.040 13 N -0.165 5.165 14 C -0.039 4.039 15 C 0.275 3.725 16 F -0.172 7.172 17 F -0.161 7.161 18 C -0.155 4.155 19 C -0.180 4.180 20 C 0.044 3.956 21 N -0.304 5.304 22 C -0.382 4.382 23 H 0.089 0.911 24 C -0.194 4.194 25 N -0.546 5.546 26 Si 0.731 3.269 27 H -0.202 1.202 28 H -0.217 1.217 29 H -0.215 1.215 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.230 0.770 34 H 0.167 0.833 35 H 0.166 0.834 36 H 0.185 0.815 37 H 0.153 0.847 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.037 0.963 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.920 5.197 20.727 21.389 hybrid contribution -0.028 0.634 -1.345 1.487 sum -0.947 5.831 19.383 20.263 Atomic orbital electron populations 1.21825 0.95558 1.01872 1.00221 1.20549 0.93322 0.93495 0.86612 0.95544 1.21900 0.95262 0.97041 0.83339 0.89140 1.46025 1.69044 1.12194 1.08116 1.17875 0.77871 0.87083 0.82898 1.90795 1.50305 1.13948 1.85294 1.20886 1.01757 0.95675 0.96966 1.21852 0.95630 0.91961 0.97742 1.22269 0.99107 1.02081 0.94511 1.23029 0.92679 0.89554 0.98741 1.67433 1.19340 1.08735 1.21034 1.21862 0.95284 0.96326 0.90387 1.20083 0.88186 0.91704 0.72570 1.93012 1.65707 1.94294 1.64215 1.93079 1.88478 1.95513 1.39073 1.21768 0.95130 1.00098 0.98498 1.22183 0.99284 0.99770 0.96756 1.20839 0.83075 0.97172 0.94500 1.44035 1.03161 1.65161 1.18084 1.19216 0.95169 1.37823 0.85996 0.91104 1.25084 0.97861 0.99450 0.96969 1.70031 1.23946 1.43886 1.16736 0.86241 0.79701 0.79563 0.81392 1.20158 1.21743 1.21528 0.92517 0.94399 0.91692 0.76997 0.83313 0.83369 0.81460 0.84690 0.93123 0.92774 0.92409 0.92926 0.89374 0.96279 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 7.84 37.16 0.29 -2.22 16 2 C 0.17 3.26 3.03 -67.60 -0.20 3.05 16 3 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 4 C 0.13 2.23 2.00 -67.79 -0.14 2.10 16 5 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 6 N -0.70 -9.61 4.51 -54.62 -0.25 -9.86 16 7 C 0.56 7.97 6.54 -12.33 -0.08 7.89 16 8 O -0.53 -9.11 13.55 5.32 0.07 -9.04 16 9 C -0.15 -1.71 5.79 -104.82 -0.61 -2.31 16 10 C -0.05 -0.37 9.46 -38.87 -0.37 -0.73 16 11 C -0.16 -1.00 10.10 -39.50 -0.40 -1.40 16 12 C 0.12 0.90 11.17 -17.47 -0.20 0.70 16 13 N -0.46 -5.19 9.78 -9.14 -0.09 -5.28 16 14 C 0.10 1.27 6.60 -82.17 -0.54 0.73 16 15 C 0.33 4.37 4.60 36.01 0.17 4.54 16 16 F -0.19 -2.64 16.92 2.25 0.04 -2.60 16 17 F -0.18 -2.87 14.69 2.25 0.03 -2.84 16 18 C -0.12 -1.97 5.46 -26.67 -0.15 -2.11 16 19 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 20 C 0.17 3.89 5.28 -3.71 -0.02 3.87 16 21 N -0.58 -13.79 2.99 -164.78 -0.49 -14.28 16 22 C -0.25 -6.61 8.58 -15.06 -0.13 -6.74 16 23 H 0.07 1.83 6.23 -52.48 -0.33 1.51 16 24 C 0.01 0.14 4.94 -17.43 -0.09 0.05 16 25 N -0.90 -25.35 11.21 55.49 0.62 -24.73 16 26 Si 0.90 21.32 29.58 -169.99 -5.03 16.30 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 30 H 0.06 1.11 7.42 -51.93 -0.39 0.72 16 31 H 0.04 0.57 7.79 -51.93 -0.40 0.17 16 32 H 0.06 1.27 7.64 -51.93 -0.40 0.87 16 33 H 0.40 4.30 7.63 -40.82 -0.31 3.99 16 34 H 0.15 0.85 7.50 -52.48 -0.39 0.46 16 35 H 0.15 0.43 8.06 -52.48 -0.42 0.01 16 36 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.14 1.57 7.74 -51.93 -0.40 1.17 16 38 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.09 2.28 6.13 -51.93 -0.32 1.96 16 43 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 44 H 0.25 6.90 8.31 -40.82 -0.34 6.57 16 LS Contribution 360.97 15.07 5.44 5.44 Total: -1.00 -31.89 360.97 -8.12 -40.01 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.85 Total: 2.28 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -2.62 Total: 4.58 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.21 Total: -54.14 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.07 Total: -9.04 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 0.07 Total: -5.43 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.89 -8.12 -40.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993563581.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.477 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds