Wall clock time and date at job start Wed Apr 1 2020 00:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.58313 * 2 1 4 4 C 1.53191 * 109.58689 * 120.28561 * 2 1 3 5 5 H 1.08992 * 109.49756 * 54.47246 * 4 2 1 6 6 N 1.46497 * 109.49448 * 294.37173 * 4 2 1 7 7 C 1.34780 * 119.99504 * 155.00286 * 6 4 2 8 8 O 1.21552 * 120.00354 * 0.02562 * 7 6 4 9 9 C 1.47840 * 120.00054 * 179.97438 * 7 6 4 10 10 C 1.40023 * 120.56075 * 328.50094 * 9 7 6 11 11 C 1.38352 * 118.29123 * 180.02562 * 10 9 7 12 12 C 1.38352 * 119.30443 * 359.97438 * 11 10 9 13 13 N 1.31927 * 121.07661 * 0.03584 * 12 11 10 14 14 C 1.31697 * 121.88105 * 359.64637 * 13 12 11 15 15 C 1.50701 * 119.71732 * 180.32047 * 14 13 12 16 16 F 1.39901 * 109.47029 * 14.18955 * 15 14 13 17 17 F 1.39899 * 109.47002 * 134.18374 * 15 14 13 18 18 C 1.53079 * 109.28974 * 174.28211 * 4 2 1 19 19 C 1.53039 * 109.65883 * 298.84517 * 18 4 2 20 20 C 1.53190 * 109.31401 * 61.30082 * 19 18 4 21 21 N 1.46924 * 108.77615 * 305.36823 * 20 19 18 22 22 C 1.36933 * 120.62815 * 233.62730 * 21 20 19 23 23 H 1.08004 * 120.00184 * 150.31661 * 22 21 20 24 24 C 1.38813 * 120.00042 * 330.31406 * 22 21 20 25 25 N 1.31623 * 120.00264 * 344.61550 * 24 22 21 26 26 Si 1.86809 * 120.00074 * 164.62166 * 24 22 21 27 27 H 1.48502 * 109.46652 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.46884 * 119.99894 * 26 24 22 29 29 H 1.48498 * 109.46832 * 239.99759 * 26 24 22 30 30 H 1.09000 * 109.47163 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47150 * 299.99804 * 1 2 3 32 32 H 1.08997 * 109.47564 * 59.99542 * 1 2 3 33 33 H 0.96996 * 120.00625 * 335.00148 * 6 4 2 34 34 H 1.08003 * 120.85089 * 0.02562 * 10 9 7 35 35 H 1.08003 * 120.35024 * 179.97438 * 11 10 9 36 36 H 1.07997 * 119.46158 * 180.02562 * 12 11 10 37 37 H 1.09000 * 109.47115 * 254.18445 * 15 14 13 38 38 H 1.09007 * 109.44752 * 178.75808 * 18 4 2 39 39 H 1.08995 * 109.34598 * 58.87619 * 18 4 2 40 40 H 1.09001 * 109.49599 * 301.34937 * 19 18 4 41 41 H 1.08997 * 109.52525 * 181.27150 * 19 18 4 42 42 H 1.09001 * 109.58756 * 185.57813 * 20 19 18 43 43 H 1.09008 * 109.58229 * 65.15344 * 20 19 18 44 44 H 0.96993 * 120.00286 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7279 1.2463 5 1 1.6030 -1.7237 1.2934 6 7 1.6705 0.0298 2.4434 7 6 1.5473 -0.6004 3.6284 8 8 1.7460 -1.7972 3.7039 9 6 1.1714 0.1641 4.8366 10 6 1.5568 1.5025 4.9807 11 6 1.1800 2.1732 6.1307 12 6 0.4413 1.5068 7.0920 13 7 0.0924 0.2449 6.9292 14 6 0.4216 -0.4341 5.8499 15 6 -0.0089 -1.8716 5.7113 16 9 -0.9922 -2.1578 6.6645 17 9 -0.5274 -2.0816 4.4290 18 6 3.5675 -0.8494 1.1689 19 6 3.9569 -1.6655 -0.0658 20 6 3.4650 -0.9452 -1.3251 21 7 2.0225 -0.6980 -1.1954 22 6 1.1536 -1.1107 -2.1700 23 1 0.1389 -1.3758 -1.9118 24 6 1.5769 -1.1882 -3.4897 25 7 2.6901 -0.5915 -3.8600 26 14 0.5664 -2.1393 -4.7404 27 1 -0.6319 -2.7120 -4.0759 28 1 0.1384 -1.2248 -5.8293 29 1 1.3891 -3.2365 -5.3100 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.5123 0.9848 2.3832 34 1 2.1333 1.9985 4.2139 35 1 1.4597 3.2062 6.2764 36 1 0.1455 2.0280 7.9905 37 1 0.8497 -2.5247 5.8675 38 1 3.9379 -1.3474 2.0651 39 1 4.0061 0.1461 1.0995 40 1 3.4984 -2.6527 -0.0087 41 1 5.0411 -1.7698 -0.1064 42 1 3.6517 -1.5688 -2.1993 43 1 3.9903 0.0040 -1.4318 44 1 2.9861 -0.6460 -4.7821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993563581.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:03 Heat of formation + Delta-G solvation = -95.815552 kcal Electronic energy + Delta-G solvation = -30429.012373 eV Core-core repulsion = 26016.860198 eV Total energy + Delta-G solvation = -4412.152175 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.03988 -48.06027 -41.83529 -40.55385 -39.10708 -35.99490 -34.50032 -33.85172 -33.39092 -33.17199 -30.90455 -28.22765 -27.65455 -26.86992 -25.71137 -23.98010 -23.29883 -22.34143 -21.73362 -21.11574 -19.18500 -18.71485 -18.53797 -18.38427 -18.18575 -17.46628 -17.01534 -16.68210 -16.23311 -15.98076 -15.80457 -15.58435 -15.36633 -15.04534 -14.89834 -14.81751 -14.51954 -14.40355 -14.29366 -14.17291 -13.96230 -13.48146 -13.35525 -13.26142 -12.84008 -12.71630 -12.53693 -12.49665 -12.36627 -12.00531 -11.82857 -11.76683 -11.63671 -11.27699 -11.11654 -11.08297 -10.67352 -10.53133 -10.37360 -10.03787 -8.64416 -7.85953 -5.31757 -0.54619 -0.02035 1.45169 1.48737 1.57522 1.65310 1.98097 2.30157 2.52800 2.57261 3.04982 3.24514 3.29927 3.46495 3.66853 3.70703 3.84708 3.90176 3.92599 4.03355 4.09322 4.22329 4.27388 4.36705 4.39373 4.51587 4.62113 4.77008 4.83432 4.88608 4.91503 4.96354 5.04903 5.14455 5.20497 5.27830 5.42400 5.43639 5.47729 5.59448 5.71492 5.77878 6.41875 6.44560 6.63103 7.10596 7.17626 7.87104 8.37868 9.20887 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018514 B = 0.003020 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.003000 B = 9268.194963 C = 9756.755780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.166 3.834 3 H 0.039 0.961 4 C 0.147 3.853 5 H 0.058 0.942 6 N -0.694 5.694 7 C 0.560 3.440 8 O -0.563 6.563 9 C -0.163 4.163 10 C -0.041 4.041 11 C -0.138 4.138 12 C 0.117 3.883 13 N -0.485 5.485 14 C 0.083 3.917 15 C 0.322 3.678 16 F -0.198 7.198 17 F -0.200 7.200 18 C -0.107 4.107 19 C -0.130 4.130 20 C 0.176 3.824 21 N -0.600 5.600 22 C -0.253 4.253 23 H 0.069 0.931 24 C -0.045 4.045 25 N -0.931 5.931 26 Si 0.957 3.043 27 H -0.271 1.271 28 H -0.291 1.291 29 H -0.292 1.292 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.413 0.587 34 H 0.177 0.823 35 H 0.194 0.806 36 H 0.203 0.797 37 H 0.142 0.858 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.042 0.958 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.007 0.993 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.477 9.096 22.529 24.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.059 3.941 3 H 0.057 0.943 4 C 0.041 3.959 5 H 0.076 0.924 6 N -0.345 5.345 7 C 0.346 3.654 8 O -0.442 6.442 9 C -0.169 4.169 10 C -0.067 4.067 11 C -0.157 4.157 12 C -0.040 4.040 13 N -0.194 5.194 14 C -0.057 4.057 15 C 0.267 3.733 16 F -0.179 7.179 17 F -0.182 7.182 18 C -0.146 4.146 19 C -0.170 4.170 20 C 0.051 3.949 21 N -0.324 5.324 22 C -0.383 4.383 23 H 0.087 0.913 24 C -0.241 4.241 25 N -0.577 5.577 26 Si 0.786 3.214 27 H -0.195 1.195 28 H -0.218 1.218 29 H -0.219 1.219 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.250 0.750 34 H 0.194 0.806 35 H 0.211 0.789 36 H 0.220 0.780 37 H 0.159 0.841 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.025 0.975 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.823 7.825 23.035 24.342 hybrid contribution -0.085 -0.086 -1.907 1.911 sum -0.908 7.739 21.127 22.519 Atomic orbital electron populations 1.21733 0.94844 1.00893 1.01130 1.20706 0.93961 0.93723 0.85721 0.94338 1.21355 0.95229 0.95516 0.83812 0.92405 1.45734 1.69067 1.12779 1.06902 1.18284 0.76780 0.86793 0.83560 1.90776 1.51737 1.15807 1.85929 1.20634 1.03496 0.97173 0.95567 1.22237 0.95022 0.90279 0.99135 1.22754 0.96655 1.03670 0.92625 1.23764 0.91683 0.88345 1.00227 1.67425 1.20515 1.10623 1.20806 1.21593 0.96787 0.95767 0.91529 1.20319 0.87918 0.93580 0.71469 1.92982 1.66091 1.94517 1.64342 1.93025 1.88784 1.95809 1.40549 1.21680 0.94829 1.00629 0.97457 1.22022 1.00378 0.98733 0.95858 1.20636 0.83047 0.96202 0.95039 1.44259 1.03201 1.66009 1.18936 1.19445 0.95384 1.36840 0.86671 0.91317 1.25713 0.99032 1.00754 0.98603 1.70155 1.25408 1.45480 1.16657 0.85355 0.78526 0.78166 0.79307 1.19510 1.21820 1.21941 0.94420 0.91009 0.93162 0.74990 0.80599 0.78858 0.78008 0.84055 0.92343 0.91036 0.93914 0.90783 0.92928 0.97478 0.94207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 7.84 71.98 0.56 -4.05 16 2 C 0.17 6.29 3.03 44.97 0.14 6.42 16 3 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 4 C 0.15 4.95 2.00 45.08 0.09 5.04 16 5 H 0.06 2.36 7.58 -2.39 -0.02 2.35 16 6 N -0.69 -17.55 4.51 -444.99 -2.01 -19.56 16 7 C 0.56 15.32 6.54 86.78 0.57 15.88 16 8 O -0.56 -19.61 13.55 -3.88 -0.05 -19.66 16 9 C -0.16 -3.44 5.79 -19.99 -0.12 -3.56 16 10 C -0.04 -0.48 9.46 22.73 0.22 -0.27 16 11 C -0.14 -0.98 10.10 22.32 0.23 -0.75 16 12 C 0.12 1.31 11.17 84.71 0.95 2.25 16 13 N -0.48 -10.03 9.78 -182.84 -1.79 -11.82 16 14 C 0.08 1.98 6.60 42.89 0.28 2.26 16 15 C 0.32 8.74 4.60 71.24 0.33 9.06 16 16 F -0.20 -5.59 16.92 44.97 0.76 -4.83 16 17 F -0.20 -6.60 14.69 44.97 0.66 -5.94 16 18 C -0.11 -3.47 5.46 30.63 0.17 -3.31 16 19 C -0.13 -4.91 6.08 30.67 0.19 -4.72 16 20 C 0.18 8.23 5.28 86.36 0.46 8.68 16 21 N -0.60 -28.83 2.99 -675.23 -2.02 -30.84 16 22 C -0.25 -13.50 8.58 84.03 0.72 -12.78 16 23 H 0.07 3.62 6.23 -2.91 -0.02 3.61 16 24 C -0.05 -2.49 4.94 84.86 0.42 -2.07 16 25 N -0.93 -53.68 11.21 21.65 0.24 -53.44 16 26 Si 0.96 44.76 29.58 68.60 2.03 46.79 16 27 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 28 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 29 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 30 H 0.04 1.47 7.42 -2.39 -0.02 1.46 16 31 H 0.07 2.05 7.79 -2.39 -0.02 2.03 16 32 H 0.05 1.94 7.64 -2.39 -0.02 1.92 16 33 H 0.41 7.60 7.63 -92.71 -0.71 6.89 16 34 H 0.18 1.05 7.50 -2.91 -0.02 1.03 16 35 H 0.19 -0.31 8.06 -2.91 -0.02 -0.34 16 36 H 0.20 0.70 8.06 -2.91 -0.02 0.68 16 37 H 0.14 3.48 7.74 -2.39 -0.02 3.46 16 38 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.05 2.82 6.13 -2.39 -0.01 2.81 16 43 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 44 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -73.13 360.97 3.35 -69.78 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.33 Total: 11.43 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: 5.19 Total: 18.10 kcal Atomic # 7 Polarization: -110.09 SS G_CDS: -5.57 Total: -115.66 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.05 Total: -19.66 kcal Atomic # 9 Polarization: -12.19 SS G_CDS: 1.42 Total: -10.77 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -73.13 3.35 -69.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993563581.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.035 kcal (2) G-P(sol) polarization free energy of solvation -73.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds