Wall clock time and date at job start Wed Apr 1 2020 00:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.70116 * 2 1 4 4 C 1.53187 * 109.58641 * 120.35837 * 2 1 3 5 5 H 1.08999 * 109.49996 * 294.37207 * 4 2 1 6 6 N 1.46500 * 109.50012 * 54.43814 * 4 2 1 7 7 C 1.34771 * 120.00411 * 205.00183 * 6 4 2 8 8 O 1.21561 * 119.99771 * 359.97438 * 7 6 4 9 9 C 1.47835 * 120.00567 * 179.97438 * 7 6 4 10 10 C 1.40028 * 120.55883 * 355.35370 * 9 7 6 11 11 C 1.38353 * 118.29392 * 179.97438 * 10 9 7 12 12 C 1.38358 * 119.29787 * 0.02562 * 11 10 9 13 13 N 1.31923 * 121.08530 * 0.02562 * 12 11 10 14 14 C 1.31694 * 121.87487 * 359.67485 * 13 12 11 15 15 C 1.50703 * 119.71925 * 180.29268 * 14 13 12 16 16 F 1.39897 * 109.47031 * 122.98839 * 15 14 13 17 17 F 1.39902 * 109.47521 * 242.98883 * 15 14 13 18 18 C 1.53042 * 109.31458 * 174.41639 * 4 2 1 19 19 C 1.53042 * 109.54071 * 298.63895 * 18 4 2 20 20 C 1.52764 * 109.38411 * 61.23594 * 19 18 4 21 21 N 1.46924 * 109.00619 * 305.58845 * 20 19 18 22 22 C 1.36938 * 120.63345 * 233.58258 * 21 20 19 23 23 H 1.08001 * 120.00214 * 147.08954 * 22 21 20 24 24 C 1.38815 * 119.99784 * 327.09466 * 22 21 20 25 25 N 1.31615 * 119.99812 * 335.94194 * 24 22 21 26 26 Si 1.86797 * 119.99866 * 155.94305 * 24 22 21 27 27 H 1.48501 * 109.47177 * 59.99918 * 26 24 22 28 28 H 1.48499 * 109.47291 * 300.00131 * 26 24 22 29 29 H 1.48502 * 109.47013 * 179.97438 * 26 24 22 30 30 H 1.08995 * 109.47455 * 180.35649 * 1 2 3 31 31 H 1.09006 * 109.46821 * 300.35491 * 1 2 3 32 32 H 1.09005 * 109.47065 * 60.34914 * 1 2 3 33 33 H 0.97005 * 120.00012 * 24.99252 * 6 4 2 34 34 H 1.07998 * 120.85205 * 359.96122 * 10 9 7 35 35 H 1.07990 * 120.35412 * 179.97438 * 11 10 9 36 36 H 1.08007 * 119.46087 * 179.97438 * 12 11 10 37 37 H 1.09007 * 109.46841 * 2.99290 * 15 14 13 38 38 H 1.09008 * 109.45667 * 58.65116 * 18 4 2 39 39 H 1.08997 * 109.46770 * 178.61402 * 18 4 2 40 40 H 1.08993 * 109.49758 * 181.31102 * 19 18 4 41 41 H 1.09001 * 109.49495 * 301.40875 * 19 18 4 42 42 H 1.09002 * 109.50924 * 185.70857 * 20 19 18 43 43 H 1.08997 * 109.43136 * 65.42452 * 20 19 18 44 44 H 0.96991 * 120.00458 * 356.68347 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 1.2453 5 1 1.7660 -0.1669 2.1368 6 7 1.4508 -2.0677 1.3074 7 6 1.3278 -2.6959 2.4934 8 8 1.7091 -2.1523 3.5116 9 6 0.7291 -4.0462 2.5562 10 6 0.1980 -4.6437 1.4065 11 6 -0.3503 -5.9089 1.5186 12 6 -0.3568 -6.5372 2.7513 13 7 0.1500 -5.9494 3.8181 14 6 0.6880 -4.7488 3.7609 15 6 1.2587 -4.1257 5.0088 16 9 2.6024 -3.8003 4.7949 17 9 0.5419 -2.9654 5.3206 18 6 3.5675 -0.8482 1.1700 19 6 3.9569 -1.6658 -0.0637 20 6 3.4644 -0.9519 -1.3212 21 7 2.0225 -0.6996 -1.1946 22 6 1.1535 -1.1134 -2.1686 23 1 0.1536 -1.4239 -1.9038 24 6 1.5579 -1.1339 -3.4964 25 7 2.5378 -0.3525 -3.8980 26 14 0.7112 -2.2706 -4.7131 27 1 -0.7333 -1.9332 -4.7832 28 1 0.8696 -3.6785 -4.2681 29 1 1.3238 -2.1034 -6.0555 30 1 -0.3634 -1.0276 0.0064 31 1 -0.3633 0.5194 0.8868 32 1 -0.3633 0.5084 -0.8931 33 1 1.1467 -2.5017 0.4949 34 1 0.2158 -4.1299 0.4567 35 1 -0.7695 -6.4006 0.6533 36 1 -0.7846 -7.5248 2.8419 37 1 1.1832 -4.8326 5.8351 38 1 4.0062 0.1472 1.0991 39 1 3.9379 -1.3450 2.0667 40 1 5.0411 -1.7697 -0.1039 41 1 3.4982 -2.6529 -0.0054 42 1 3.6503 -1.5798 -2.1927 43 1 3.9928 -0.0050 -1.4311 44 1 2.9452 0.2722 -3.2779 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993563584.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:07 Heat of formation + Delta-G solvation = -75.551936 kcal Electronic energy + Delta-G solvation = -31386.417660 eV Core-core repulsion = 26975.144181 eV Total energy + Delta-G solvation = -4411.273479 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.71491 -46.69587 -40.83218 -39.45389 -37.67194 -34.32179 -33.35887 -32.53717 -32.28289 -31.57431 -29.32582 -27.03646 -26.31363 -25.00617 -24.71409 -22.75395 -21.96560 -21.11756 -20.65920 -18.88732 -18.24595 -17.59693 -17.32166 -17.05187 -17.01366 -16.17735 -15.36063 -15.30051 -15.15658 -14.67644 -14.45230 -14.28099 -13.94351 -13.65688 -13.54098 -13.45806 -13.23937 -13.20526 -13.03484 -12.94448 -12.66286 -12.24690 -11.87366 -11.54126 -11.33025 -11.30562 -11.09680 -10.87393 -10.71266 -10.30730 -10.26327 -10.17260 -10.15483 -10.11705 -9.84476 -9.60950 -9.55432 -9.21913 -8.65300 -8.43339 -6.92853 -6.16059 -3.38510 0.29900 0.74904 2.83744 3.25921 3.31542 3.39537 3.40609 3.57363 3.59858 4.10519 4.26147 4.45281 4.46944 4.52937 4.73019 4.93033 5.06334 5.09163 5.13191 5.18731 5.28073 5.43683 5.50535 5.57278 5.61035 5.72003 5.79477 5.98017 6.09607 6.10630 6.17677 6.30409 6.35895 6.45320 6.51060 6.59946 6.76191 6.85611 6.93073 7.01331 7.13190 7.37256 7.81050 7.93686 8.41286 8.49996 9.01715 9.74743 10.21726 11.12160 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013745 B = 0.004248 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.601031 B = 6589.937119 C = 7752.435700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.160 3.840 3 H 0.039 0.961 4 C 0.136 3.864 5 H 0.080 0.920 6 N -0.691 5.691 7 C 0.545 3.455 8 O -0.520 6.520 9 C -0.141 4.141 10 C -0.044 4.044 11 C -0.156 4.156 12 C 0.115 3.885 13 N -0.465 5.465 14 C 0.096 3.904 15 C 0.340 3.660 16 F -0.183 7.183 17 F -0.182 7.182 18 C -0.121 4.121 19 C -0.134 4.134 20 C 0.153 3.847 21 N -0.593 5.593 22 C -0.358 4.358 23 H 0.058 0.942 24 C -0.017 4.017 25 N -0.910 5.910 26 Si 1.064 2.936 27 H -0.293 1.293 28 H -0.294 1.294 29 H -0.286 1.286 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.407 0.593 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.168 0.832 37 H 0.120 0.880 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.017 0.983 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.459 -10.337 12.307 16.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.053 3.947 3 H 0.057 0.943 4 C 0.030 3.970 5 H 0.098 0.902 6 N -0.343 5.343 7 C 0.330 3.670 8 O -0.397 6.397 9 C -0.146 4.146 10 C -0.070 4.070 11 C -0.176 4.176 12 C -0.042 4.042 13 N -0.174 5.174 14 C -0.045 4.045 15 C 0.285 3.715 16 F -0.164 7.164 17 F -0.163 7.163 18 C -0.160 4.160 19 C -0.174 4.174 20 C 0.027 3.973 21 N -0.318 5.318 22 C -0.487 4.487 23 H 0.076 0.924 24 C -0.221 4.221 25 N -0.549 5.549 26 Si 0.893 3.107 27 H -0.220 1.220 28 H -0.221 1.221 29 H -0.211 1.211 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.244 0.756 34 H 0.168 0.832 35 H 0.167 0.833 36 H 0.186 0.814 37 H 0.137 0.863 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.035 0.965 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.199 -10.821 12.199 16.838 hybrid contribution -0.121 0.781 0.184 0.811 sum -4.320 -10.040 12.383 16.517 Atomic orbital electron populations 1.21737 0.95355 1.01315 1.00485 1.20743 0.93631 0.93725 0.86626 0.94339 1.21569 0.92854 0.82575 1.00025 0.90188 1.45854 1.61211 1.18728 1.08475 1.17948 0.79750 0.84687 0.84639 1.90851 1.49022 1.66282 1.33569 1.20998 1.01903 0.96968 0.94750 1.22010 0.92125 0.94641 0.98257 1.22292 0.99899 0.95503 0.99864 1.22962 0.94065 0.99572 0.87613 1.67315 1.08757 1.08752 1.32572 1.21855 0.96689 0.91460 0.94455 1.19757 0.74421 0.83701 0.93633 1.93049 1.33652 1.93682 1.95986 1.93046 1.77857 1.52075 1.93338 1.21772 0.95440 1.00493 0.98295 1.21944 0.99130 0.99542 0.96744 1.20850 0.84383 0.96744 0.95282 1.44206 1.02591 1.65251 1.19730 1.19828 0.97640 1.43509 0.87685 0.92438 1.25895 1.00177 0.99888 0.96165 1.70766 1.27015 1.19666 1.37414 0.83533 0.75151 0.75603 0.76366 1.21969 1.22082 1.21133 0.93004 0.94196 0.91694 0.75602 0.83172 0.83262 0.81446 0.86300 0.91776 0.92586 0.93143 0.92687 0.90864 0.96477 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 7.76 37.16 0.29 -2.07 16 2 C 0.16 3.07 3.20 -67.60 -0.22 2.85 16 3 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 4 C 0.14 2.38 2.32 -67.81 -0.16 2.22 16 5 H 0.08 1.43 7.58 -51.93 -0.39 1.03 16 6 N -0.69 -11.43 3.41 -54.64 -0.19 -11.61 16 7 C 0.55 9.15 7.52 -12.34 -0.09 9.06 16 8 O -0.52 -9.94 11.04 5.31 0.06 -9.88 16 9 C -0.14 -2.02 5.85 -104.82 -0.61 -2.63 16 10 C -0.04 -0.51 9.64 -38.87 -0.37 -0.89 16 11 C -0.16 -1.40 10.10 -39.50 -0.40 -1.80 16 12 C 0.12 1.05 11.17 -17.47 -0.20 0.85 16 13 N -0.47 -5.55 10.24 -9.14 -0.09 -5.64 16 14 C 0.10 1.32 6.31 -82.17 -0.52 0.80 16 15 C 0.34 4.72 5.02 36.01 0.18 4.90 16 16 F -0.18 -2.97 14.91 2.25 0.03 -2.94 16 17 F -0.18 -2.93 15.15 2.25 0.03 -2.90 16 18 C -0.12 -2.11 5.58 -26.69 -0.15 -2.26 16 19 C -0.13 -2.45 5.91 -26.83 -0.16 -2.61 16 20 C 0.15 3.30 4.70 -3.93 -0.02 3.28 16 21 N -0.59 -13.04 2.44 -165.03 -0.40 -13.44 16 22 C -0.36 -8.70 8.37 -15.06 -0.13 -8.82 16 23 H 0.06 1.38 6.40 -52.49 -0.34 1.04 16 24 C -0.02 -0.45 4.68 -17.43 -0.08 -0.53 16 25 N -0.91 -25.60 12.67 55.49 0.70 -24.90 16 26 Si 1.06 23.25 29.98 -169.99 -5.10 18.16 16 27 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 29 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 30 H 0.05 0.91 6.38 -51.93 -0.33 0.58 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 1.27 7.65 -51.93 -0.40 0.87 16 33 H 0.41 6.71 5.90 -40.82 -0.24 6.47 16 34 H 0.15 1.67 6.55 -52.49 -0.34 1.33 16 35 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.17 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.12 1.22 8.11 -51.93 -0.42 0.80 16 38 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 1.02 7.53 -51.93 -0.39 0.63 16 42 H 0.07 1.77 6.66 -51.93 -0.35 1.43 16 43 H 0.02 0.39 7.84 -51.93 -0.41 -0.02 16 44 H 0.27 7.72 6.74 -40.82 -0.28 7.45 16 LS Contribution 353.48 15.07 5.33 5.33 Total: -1.00 -30.38 353.48 -7.89 -38.28 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.64 Total: 7.20 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -2.63 Total: 2.35 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.02 Total: -55.59 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.06 Total: -9.88 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.07 Total: -5.84 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.10 Total: 18.16 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.38 -7.89 -38.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993563584.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.277 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds