Wall clock time and date at job start Wed Apr 1 2020 00:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.70116 * 2 1 4 4 C 1.53187 * 109.58641 * 120.35837 * 2 1 3 5 5 H 1.08999 * 109.49996 * 294.37207 * 4 2 1 6 6 N 1.46500 * 109.50012 * 54.43814 * 4 2 1 7 7 C 1.34771 * 120.00411 * 205.00183 * 6 4 2 8 8 O 1.21561 * 119.99771 * 359.97438 * 7 6 4 9 9 C 1.47835 * 120.00567 * 179.97438 * 7 6 4 10 10 C 1.40028 * 120.55883 * 355.35370 * 9 7 6 11 11 C 1.38353 * 118.29392 * 179.97438 * 10 9 7 12 12 C 1.38358 * 119.29787 * 0.02562 * 11 10 9 13 13 N 1.31923 * 121.08530 * 0.02562 * 12 11 10 14 14 C 1.31694 * 121.87487 * 359.67485 * 13 12 11 15 15 C 1.50703 * 119.71925 * 180.29268 * 14 13 12 16 16 F 1.39897 * 109.47031 * 122.98839 * 15 14 13 17 17 F 1.39902 * 109.47521 * 242.98883 * 15 14 13 18 18 C 1.53042 * 109.31458 * 174.41639 * 4 2 1 19 19 C 1.53042 * 109.54071 * 298.63895 * 18 4 2 20 20 C 1.52764 * 109.38411 * 61.23594 * 19 18 4 21 21 N 1.46924 * 109.00619 * 305.58845 * 20 19 18 22 22 C 1.36938 * 120.63345 * 233.58258 * 21 20 19 23 23 H 1.08001 * 120.00214 * 147.08954 * 22 21 20 24 24 C 1.38815 * 119.99784 * 327.09466 * 22 21 20 25 25 N 1.31615 * 119.99812 * 335.94194 * 24 22 21 26 26 Si 1.86797 * 119.99866 * 155.94305 * 24 22 21 27 27 H 1.48501 * 109.47177 * 59.99918 * 26 24 22 28 28 H 1.48499 * 109.47291 * 300.00131 * 26 24 22 29 29 H 1.48502 * 109.47013 * 179.97438 * 26 24 22 30 30 H 1.08995 * 109.47455 * 180.35649 * 1 2 3 31 31 H 1.09006 * 109.46821 * 300.35491 * 1 2 3 32 32 H 1.09005 * 109.47065 * 60.34914 * 1 2 3 33 33 H 0.97005 * 120.00012 * 24.99252 * 6 4 2 34 34 H 1.07998 * 120.85205 * 359.96122 * 10 9 7 35 35 H 1.07990 * 120.35412 * 179.97438 * 11 10 9 36 36 H 1.08007 * 119.46087 * 179.97438 * 12 11 10 37 37 H 1.09007 * 109.46841 * 2.99290 * 15 14 13 38 38 H 1.09008 * 109.45667 * 58.65116 * 18 4 2 39 39 H 1.08997 * 109.46770 * 178.61402 * 18 4 2 40 40 H 1.08993 * 109.49758 * 181.31102 * 19 18 4 41 41 H 1.09001 * 109.49495 * 301.40875 * 19 18 4 42 42 H 1.09002 * 109.50924 * 185.70857 * 20 19 18 43 43 H 1.08997 * 109.43136 * 65.42452 * 20 19 18 44 44 H 0.96991 * 120.00458 * 356.68347 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 1.2453 5 1 1.7660 -0.1669 2.1368 6 7 1.4508 -2.0677 1.3074 7 6 1.3278 -2.6959 2.4934 8 8 1.7091 -2.1523 3.5116 9 6 0.7291 -4.0462 2.5562 10 6 0.1980 -4.6437 1.4065 11 6 -0.3503 -5.9089 1.5186 12 6 -0.3568 -6.5372 2.7513 13 7 0.1500 -5.9494 3.8181 14 6 0.6880 -4.7488 3.7609 15 6 1.2587 -4.1257 5.0088 16 9 2.6024 -3.8003 4.7949 17 9 0.5419 -2.9654 5.3206 18 6 3.5675 -0.8482 1.1700 19 6 3.9569 -1.6658 -0.0637 20 6 3.4644 -0.9519 -1.3212 21 7 2.0225 -0.6996 -1.1946 22 6 1.1535 -1.1134 -2.1686 23 1 0.1536 -1.4239 -1.9038 24 6 1.5579 -1.1339 -3.4964 25 7 2.5378 -0.3525 -3.8980 26 14 0.7112 -2.2706 -4.7131 27 1 -0.7333 -1.9332 -4.7832 28 1 0.8696 -3.6785 -4.2681 29 1 1.3238 -2.1034 -6.0555 30 1 -0.3634 -1.0276 0.0064 31 1 -0.3633 0.5194 0.8868 32 1 -0.3633 0.5084 -0.8931 33 1 1.1467 -2.5017 0.4949 34 1 0.2158 -4.1299 0.4567 35 1 -0.7695 -6.4006 0.6533 36 1 -0.7846 -7.5248 2.8419 37 1 1.1832 -4.8326 5.8351 38 1 4.0062 0.1472 1.0991 39 1 3.9379 -1.3450 2.0667 40 1 5.0411 -1.7697 -0.1039 41 1 3.4982 -2.6529 -0.0054 42 1 3.6503 -1.5798 -2.1927 43 1 3.9928 -0.0050 -1.4311 44 1 2.9452 0.2722 -3.2779 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993563584.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:06 Heat of formation + Delta-G solvation = -93.156568 kcal Electronic energy + Delta-G solvation = -31387.181054 eV Core-core repulsion = 26975.144181 eV Total energy + Delta-G solvation = -4412.036873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.83797 -47.84487 -41.86399 -40.71422 -39.14181 -35.90571 -34.56319 -33.90318 -33.37209 -33.01048 -30.94794 -28.21549 -27.69590 -26.74720 -25.71945 -23.99032 -23.28247 -22.63740 -22.03371 -20.41006 -19.34480 -18.89036 -18.53088 -18.37518 -18.13589 -17.32984 -16.69224 -16.48232 -16.25346 -16.06186 -15.93272 -15.64059 -15.42489 -15.24112 -14.81379 -14.64521 -14.54017 -14.36832 -14.19335 -14.13006 -14.06296 -13.50159 -13.25098 -13.23177 -12.82684 -12.75207 -12.51177 -12.34441 -12.27703 -11.92061 -11.85774 -11.74413 -11.53375 -11.19860 -11.15259 -10.98088 -10.71417 -10.44251 -10.38342 -9.99845 -8.82369 -8.14426 -5.36015 -0.61320 -0.09407 1.63737 1.70052 1.76782 1.87287 2.06704 2.35385 2.58552 2.70094 3.21541 3.29870 3.31641 3.45517 3.52027 3.68396 3.85345 3.89837 3.95808 4.05942 4.06652 4.10836 4.23630 4.25490 4.33380 4.44585 4.54697 4.60786 4.78606 4.83307 4.84371 4.88877 4.94506 5.00989 5.07754 5.21411 5.26587 5.35862 5.36594 5.38784 5.56595 6.00471 6.46966 6.48736 6.57072 7.10488 7.14102 7.84702 8.32269 9.10677 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013745 B = 0.004248 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.601031 B = 6589.937119 C = 7752.435700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.158 3.842 3 H 0.030 0.970 4 C 0.145 3.855 5 H 0.079 0.921 6 N -0.689 5.689 7 C 0.545 3.455 8 O -0.549 6.549 9 C -0.167 4.167 10 C -0.051 4.051 11 C -0.141 4.141 12 C 0.123 3.877 13 N -0.474 5.474 14 C 0.083 3.917 15 C 0.329 3.671 16 F -0.201 7.201 17 F -0.199 7.199 18 C -0.115 4.115 19 C -0.120 4.120 20 C 0.162 3.838 21 N -0.602 5.602 22 C -0.342 4.342 23 H 0.066 0.934 24 C -0.072 4.072 25 N -0.947 5.947 26 Si 1.110 2.890 27 H -0.277 1.277 28 H -0.273 1.273 29 H -0.304 1.304 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.407 0.593 34 H 0.152 0.848 35 H 0.188 0.812 36 H 0.212 0.788 37 H 0.154 0.846 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.043 0.957 43 H 0.001 0.999 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.221 -13.102 12.898 19.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.052 3.948 3 H 0.048 0.952 4 C 0.039 3.961 5 H 0.097 0.903 6 N -0.340 5.340 7 C 0.331 3.669 8 O -0.428 6.428 9 C -0.173 4.173 10 C -0.077 4.077 11 C -0.160 4.160 12 C -0.034 4.034 13 N -0.183 5.183 14 C -0.057 4.057 15 C 0.275 3.725 16 F -0.182 7.182 17 F -0.181 7.181 18 C -0.154 4.154 19 C -0.159 4.159 20 C 0.036 3.964 21 N -0.327 5.327 22 C -0.472 4.472 23 H 0.083 0.917 24 C -0.269 4.269 25 N -0.589 5.589 26 Si 0.935 3.065 27 H -0.203 1.203 28 H -0.198 1.198 29 H -0.231 1.231 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.245 0.755 34 H 0.170 0.830 35 H 0.206 0.794 36 H 0.229 0.771 37 H 0.171 0.829 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.019 0.981 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.979 -13.596 12.827 19.625 hybrid contribution 0.369 1.591 0.051 1.634 sum -5.610 -12.005 12.878 18.478 Atomic orbital electron populations 1.21644 0.94186 1.01620 1.00556 1.20838 0.94593 0.93250 0.86167 0.95212 1.21327 0.92873 0.83175 0.98721 0.90257 1.45763 1.61307 1.18236 1.08683 1.18345 0.79078 0.85565 0.83920 1.90830 1.50317 1.67304 1.34373 1.20851 1.04089 0.96070 0.96288 1.22155 0.92275 0.95875 0.97389 1.22731 0.97984 0.94051 1.01207 1.23779 0.92047 1.00733 0.86810 1.67384 1.09117 1.07897 1.33913 1.21788 0.97616 0.92329 0.93976 1.20259 0.73335 0.83535 0.95373 1.92998 1.35127 1.93880 1.96218 1.92998 1.78174 1.53341 1.93545 1.21712 0.95440 1.00601 0.97611 1.21777 0.99957 0.98952 0.95249 1.20662 0.84323 0.95706 0.95682 1.44359 1.02545 1.65762 1.20032 1.20093 0.97963 1.41242 0.87876 0.91661 1.27116 1.00561 1.00832 0.98430 1.70896 1.29306 1.21437 1.37248 0.82915 0.74859 0.75100 0.73591 1.20304 1.19847 1.23099 0.92546 0.92096 0.93570 0.75502 0.83009 0.79440 0.77121 0.82870 0.91255 0.92587 0.91615 0.92838 0.93816 0.98071 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.29 7.76 71.98 0.56 -3.73 16 2 C 0.16 6.04 3.20 44.97 0.14 6.18 16 3 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 4 C 0.15 5.03 2.32 45.07 0.10 5.13 16 5 H 0.08 2.80 7.58 -2.39 -0.02 2.78 16 6 N -0.69 -22.28 3.41 -445.05 -1.52 -23.80 16 7 C 0.54 18.04 7.52 86.78 0.65 18.69 16 8 O -0.55 -21.08 11.04 -3.91 -0.04 -21.13 16 9 C -0.17 -4.59 5.85 -19.99 -0.12 -4.71 16 10 C -0.05 -1.06 9.64 22.73 0.22 -0.84 16 11 C -0.14 -1.91 10.10 22.33 0.23 -1.69 16 12 C 0.12 1.69 11.17 84.71 0.95 2.64 16 13 N -0.47 -9.92 10.24 -182.83 -1.87 -11.80 16 14 C 0.08 2.16 6.31 42.89 0.27 2.43 16 15 C 0.33 8.95 5.02 71.24 0.36 9.31 16 16 F -0.20 -6.57 14.91 44.97 0.67 -5.90 16 17 F -0.20 -6.44 15.15 44.97 0.68 -5.76 16 18 C -0.12 -3.94 5.58 30.62 0.17 -3.77 16 19 C -0.12 -4.35 5.91 30.53 0.18 -4.17 16 20 C 0.16 7.13 4.70 86.22 0.41 7.53 16 21 N -0.60 -26.62 2.44 -676.04 -1.65 -28.27 16 22 C -0.34 -16.55 8.37 84.03 0.70 -15.85 16 23 H 0.07 3.04 6.40 -2.91 -0.02 3.02 16 24 C -0.07 -3.76 4.68 84.86 0.40 -3.36 16 25 N -0.95 -54.76 12.67 21.65 0.27 -54.48 16 26 Si 1.11 46.52 29.98 68.60 2.06 48.58 16 27 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 28 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 29 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 30 H 0.06 1.91 6.38 -2.39 -0.02 1.89 16 31 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.05 1.78 7.65 -2.38 -0.02 1.76 16 33 H 0.41 13.02 5.90 -92.70 -0.55 12.48 16 34 H 0.15 3.04 6.55 -2.91 -0.02 3.02 16 35 H 0.19 1.11 8.06 -2.92 -0.02 1.09 16 36 H 0.21 0.99 8.06 -2.91 -0.02 0.96 16 37 H 0.15 2.94 8.11 -2.38 -0.02 2.93 16 38 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 39 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 41 H 0.05 1.95 7.53 -2.39 -0.02 1.94 16 42 H 0.04 2.18 6.66 -2.39 -0.02 2.16 16 43 H 0.00 0.06 7.84 -2.39 -0.02 0.04 16 44 H 0.25 15.07 6.74 -92.71 -0.62 14.44 16 Total: -1.00 -68.02 353.48 4.46 -63.56 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.64 Total: 25.21 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 5.22 Total: 13.79 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -4.77 Total: -118.35 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.04 Total: -21.13 kcal Atomic # 9 Polarization: -13.01 SS G_CDS: 1.35 Total: -11.66 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.06 Total: 48.58 kcal Total: -68.02 4.46 -63.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993563584.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.597 kcal (2) G-P(sol) polarization free energy of solvation -68.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds