Wall clock time and date at job start Wed Apr 1 2020 00:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.69979 * 2 1 4 4 C 1.53197 * 109.58202 * 239.64695 * 2 1 3 5 5 H 1.09001 * 109.52474 * 305.54475 * 4 2 1 6 6 N 1.46492 * 109.49672 * 65.62884 * 4 2 1 7 7 C 1.34782 * 119.99670 * 204.83289 * 6 4 2 8 8 O 1.21555 * 120.00218 * 0.02562 * 7 6 4 9 9 C 1.47843 * 119.99928 * 180.02562 * 7 6 4 10 10 C 1.40021 * 120.56035 * 5.48606 * 9 7 6 11 11 C 1.38355 * 118.28855 * 180.24252 * 10 9 7 12 12 C 1.38354 * 119.30436 * 359.75711 * 11 10 9 13 13 N 1.31925 * 121.07895 * 359.97438 * 12 11 10 14 14 C 1.31699 * 121.88019 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.71714 * 179.97438 * 14 13 12 16 16 F 1.39898 * 109.47221 * 238.20613 * 15 14 13 17 17 F 1.39905 * 109.46959 * 118.20501 * 15 14 13 18 18 C 1.53047 * 109.30828 * 185.58101 * 4 2 1 19 19 C 1.53032 * 109.54237 * 61.36332 * 18 4 2 20 20 C 1.53194 * 109.31281 * 298.63776 * 19 18 4 21 21 N 1.46920 * 109.58648 * 120.35875 * 2 1 3 22 22 C 1.36941 * 120.63271 * 353.37307 * 21 2 1 23 23 H 1.07995 * 120.00005 * 29.70149 * 22 21 2 24 24 C 1.38818 * 120.00084 * 209.70642 * 22 21 2 25 25 N 1.31623 * 119.99869 * 14.94537 * 24 22 21 26 26 Si 1.86791 * 119.99802 * 194.95395 * 24 22 21 27 27 H 1.48493 * 109.47547 * 59.99543 * 26 24 22 28 28 H 1.48498 * 109.47107 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47053 * 299.99379 * 26 24 22 30 30 H 1.08995 * 109.46930 * 180.35330 * 1 2 3 31 31 H 1.09000 * 109.46929 * 300.35750 * 1 2 3 32 32 H 1.09001 * 109.47018 * 60.34822 * 1 2 3 33 33 H 0.96993 * 120.00561 * 24.83619 * 6 4 2 34 34 H 1.07998 * 120.85873 * 0.02562 * 10 9 7 35 35 H 1.08003 * 120.34723 * 179.77486 * 11 10 9 36 36 H 1.07998 * 119.46063 * 179.97438 * 12 11 10 37 37 H 1.08997 * 109.47213 * 358.20867 * 15 14 13 38 38 H 1.08998 * 109.45637 * 181.38649 * 18 4 2 39 39 H 1.09007 * 109.45542 * 301.35347 * 18 4 2 40 40 H 1.09006 * 109.49842 * 58.58060 * 19 18 4 41 41 H 1.08995 * 109.50057 * 178.65411 * 19 18 4 42 42 H 1.08998 * 109.58525 * 174.42195 * 20 19 18 43 43 H 1.09005 * 109.58580 * 294.84561 * 20 19 18 44 44 H 0.96994 * 119.99629 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7294 -1.2455 5 1 1.6029 -1.7253 -1.2920 6 7 1.6705 0.0268 -2.4435 7 6 1.5504 -0.6042 -3.6284 8 8 1.7510 -1.8008 -3.7029 9 6 1.1745 0.1590 -4.8375 10 6 1.0522 1.5530 -4.7901 11 6 0.6930 2.2195 -5.9481 12 6 0.4733 1.4949 -7.1060 13 7 0.6012 0.1819 -7.1224 14 6 0.9410 -0.4973 -6.0464 15 6 1.0726 -1.9967 -6.1201 16 9 0.2032 -2.5871 -5.1967 17 9 2.3892 -2.3644 -5.8223 18 6 3.5675 -0.8481 -1.1702 19 6 3.9569 -1.6658 0.0633 20 6 3.4651 -0.9471 1.3236 21 7 2.0226 -0.6996 1.1944 22 6 1.1538 -1.1128 2.1689 23 1 0.1391 -1.3776 1.9108 24 6 1.5773 -1.1912 3.4886 25 7 2.6952 -0.6022 3.8571 26 14 0.5608 -2.1330 4.7412 27 1 0.4428 -3.5512 4.3174 28 1 1.2248 -2.0669 6.0678 29 1 -0.7930 -1.5298 4.8342 30 1 -0.3633 -1.0276 0.0063 31 1 -0.3633 0.5194 0.8868 32 1 -0.3633 0.5084 -0.8931 33 1 1.5100 0.9815 -2.3840 34 1 1.2301 2.0938 -3.8724 35 1 0.5856 3.2942 -5.9482 36 1 0.1924 2.0125 -8.0113 37 1 0.8194 -2.3347 -7.1250 38 1 3.9377 -1.3448 -2.0670 39 1 4.0061 0.1473 -1.0992 40 1 3.4982 -2.6529 0.0051 41 1 5.0411 -1.7701 0.1032 42 1 3.6519 -1.5719 2.1970 43 1 3.9904 0.0019 1.4316 44 1 2.9913 -0.6573 4.7791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993563587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:11 Heat of formation + Delta-G solvation = -71.166915 kcal Electronic energy + Delta-G solvation = -30615.763596 eV Core-core repulsion = 26204.680266 eV Total energy + Delta-G solvation = -4411.083330 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.76420 -46.74413 -40.94889 -39.38416 -37.58785 -34.52523 -33.37901 -32.61589 -32.30978 -31.58385 -29.24807 -27.13192 -26.19193 -25.11126 -24.76980 -22.89118 -22.05816 -20.72444 -20.50577 -19.53272 -18.26881 -17.70830 -17.33190 -17.06328 -16.55706 -16.16148 -15.57286 -15.39660 -15.16552 -14.93655 -14.54605 -14.06153 -13.80909 -13.76505 -13.58695 -13.43375 -13.33999 -13.24256 -13.05057 -12.75616 -12.55842 -12.31824 -11.73158 -11.55523 -11.40104 -11.13768 -10.92214 -10.76480 -10.60288 -10.45146 -10.35053 -10.25917 -10.11781 -10.05921 -9.90638 -9.69200 -9.63106 -9.38252 -8.71701 -8.46501 -6.68804 -5.80920 -3.26015 0.16247 0.58946 2.71283 3.11616 3.17257 3.37871 3.43670 3.44080 3.45866 3.99932 4.17575 4.26130 4.34944 4.47240 4.57612 4.78961 4.92028 5.06557 5.07360 5.28034 5.36620 5.42103 5.49926 5.52665 5.58373 5.77429 5.93634 5.97042 6.05174 6.18819 6.31125 6.37801 6.51707 6.59461 6.68502 6.74388 6.83259 6.95488 7.03813 7.24834 7.39152 7.60424 7.66110 7.80222 8.27192 8.43662 9.18653 9.80967 10.37311 11.27706 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.019102 B = 0.003035 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.495264 B = 9224.847606 C = 9473.613308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.027 0.973 4 C 0.132 3.868 5 H 0.090 0.910 6 N -0.709 5.709 7 C 0.547 3.453 8 O -0.506 6.506 9 C -0.141 4.141 10 C -0.047 4.047 11 C -0.158 4.158 12 C 0.116 3.884 13 N -0.463 5.463 14 C 0.099 3.901 15 C 0.338 3.662 16 F -0.182 7.182 17 F -0.180 7.180 18 C -0.117 4.117 19 C -0.140 4.140 20 C 0.170 3.830 21 N -0.581 5.581 22 C -0.254 4.254 23 H 0.070 0.930 24 C 0.006 3.994 25 N -0.902 5.902 26 Si 0.903 3.097 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.393 0.607 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.169 0.831 37 H 0.121 0.879 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.088 0.912 43 H 0.019 0.981 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.806 6.883 -21.181 22.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.044 0.956 4 C 0.027 3.973 5 H 0.108 0.892 6 N -0.360 5.360 7 C 0.331 3.669 8 O -0.382 6.382 9 C -0.146 4.146 10 C -0.073 4.073 11 C -0.177 4.177 12 C -0.041 4.041 13 N -0.172 5.172 14 C -0.042 4.042 15 C 0.283 3.717 16 F -0.163 7.163 17 F -0.161 7.161 18 C -0.155 4.155 19 C -0.180 4.180 20 C 0.044 3.956 21 N -0.304 5.304 22 C -0.383 4.383 23 H 0.088 0.912 24 C -0.193 4.193 25 N -0.546 5.546 26 Si 0.732 3.268 27 H -0.209 1.209 28 H -0.216 1.216 29 H -0.209 1.209 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.227 0.773 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.186 0.814 37 H 0.138 0.862 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.107 0.893 43 H 0.037 0.963 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.730 5.527 -21.745 22.602 hybrid contribution -0.304 0.693 1.565 1.738 sum -3.034 6.220 -20.181 21.334 Atomic orbital electron populations 1.21822 0.95633 1.01847 1.00116 1.20556 0.93241 0.93499 0.86681 0.95565 1.21874 0.95271 0.96955 0.83245 0.89238 1.45996 1.69751 1.12046 1.08160 1.17922 0.78680 0.87362 0.82929 1.90898 1.48671 1.13664 1.84927 1.21034 1.02883 0.94960 0.95769 1.21890 0.93254 0.92680 0.99489 1.22269 0.99841 1.02263 0.93370 1.22983 0.93800 0.88922 0.98403 1.67337 1.11527 1.09724 1.28599 1.21911 0.96352 0.96924 0.88970 1.19785 0.74258 0.85651 0.92020 1.93062 1.69076 1.84419 1.69721 1.93061 1.36338 1.91896 1.94846 1.21762 0.95180 1.00052 0.98541 1.22185 0.99278 0.99764 0.96765 1.20843 0.83028 0.97175 0.94505 1.44019 1.03179 1.65059 1.18178 1.19127 0.95132 1.38053 0.86032 0.91244 1.25084 0.97833 0.99444 0.96969 1.70010 1.23631 1.44075 1.16930 0.86370 0.79579 0.80244 0.80567 1.20931 1.21648 1.20877 0.92532 0.91717 0.94461 0.77270 0.83494 0.83335 0.81402 0.86185 0.93014 0.92835 0.92429 0.92958 0.89350 0.96308 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 7.84 37.16 0.29 -2.20 16 2 C 0.17 3.31 3.03 -67.60 -0.21 3.11 16 3 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 4 C 0.13 2.36 1.99 -67.81 -0.14 2.23 16 5 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16 6 N -0.71 -10.18 4.53 -54.63 -0.25 -10.42 16 7 C 0.55 8.42 7.51 -12.33 -0.09 8.33 16 8 O -0.51 -9.59 11.05 5.32 0.06 -9.53 16 9 C -0.14 -1.74 5.85 -104.82 -0.61 -2.35 16 10 C -0.05 -0.40 9.64 -38.87 -0.37 -0.77 16 11 C -0.16 -0.99 10.10 -39.50 -0.40 -1.39 16 12 C 0.12 0.84 11.17 -17.47 -0.20 0.64 16 13 N -0.46 -4.85 10.24 -9.14 -0.09 -4.94 16 14 C 0.10 1.23 6.31 -82.17 -0.52 0.71 16 15 C 0.34 4.46 5.02 36.00 0.18 4.64 16 16 F -0.18 -2.89 15.00 2.25 0.03 -2.85 16 17 F -0.18 -2.84 15.07 2.25 0.03 -2.80 16 18 C -0.12 -2.10 5.46 -26.69 -0.15 -2.24 16 19 C -0.14 -2.77 6.08 -26.61 -0.16 -2.93 16 20 C 0.17 3.99 5.28 -3.71 -0.02 3.97 16 21 N -0.58 -14.01 2.99 -164.77 -0.49 -14.50 16 22 C -0.25 -6.71 8.59 -15.06 -0.13 -6.84 16 23 H 0.07 1.80 6.22 -52.49 -0.33 1.47 16 24 C 0.01 0.15 4.95 -17.43 -0.09 0.06 16 25 N -0.90 -25.58 11.19 55.49 0.62 -24.96 16 26 Si 0.90 21.45 29.58 -169.99 -5.03 16.43 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 H 0.06 1.10 7.40 -51.93 -0.38 0.72 16 31 H 0.06 1.26 7.67 -51.93 -0.40 0.86 16 32 H 0.04 0.55 7.78 -51.93 -0.40 0.15 16 33 H 0.39 4.43 6.74 -40.82 -0.28 4.15 16 34 H 0.15 0.90 6.56 -52.49 -0.34 0.55 16 35 H 0.15 0.43 8.06 -52.48 -0.42 0.01 16 36 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.12 1.16 8.11 -51.93 -0.42 0.73 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.09 2.33 6.12 -51.93 -0.32 2.01 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 357.24 15.07 5.38 5.38 Total: -1.00 -32.81 357.24 -8.12 -40.92 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.78 Total: 2.32 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -2.60 Total: 4.96 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.21 Total: -54.82 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.06 Total: -9.53 kcal Atomic # 9 Polarization: -5.73 SS G_CDS: 0.07 Total: -5.66 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.81 -8.12 -40.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993563587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.243 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds