Wall clock time and date at job start Wed Apr 1 2020 00:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.69979 * 2 1 4 4 C 1.53197 * 109.58202 * 239.64695 * 2 1 3 5 5 H 1.09001 * 109.52474 * 305.54475 * 4 2 1 6 6 N 1.46492 * 109.49672 * 65.62884 * 4 2 1 7 7 C 1.34782 * 119.99670 * 204.83289 * 6 4 2 8 8 O 1.21555 * 120.00218 * 0.02562 * 7 6 4 9 9 C 1.47843 * 119.99928 * 180.02562 * 7 6 4 10 10 C 1.40021 * 120.56035 * 5.48606 * 9 7 6 11 11 C 1.38355 * 118.28855 * 180.24252 * 10 9 7 12 12 C 1.38354 * 119.30436 * 359.75711 * 11 10 9 13 13 N 1.31925 * 121.07895 * 359.97438 * 12 11 10 14 14 C 1.31699 * 121.88019 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.71714 * 179.97438 * 14 13 12 16 16 F 1.39898 * 109.47221 * 238.20613 * 15 14 13 17 17 F 1.39905 * 109.46959 * 118.20501 * 15 14 13 18 18 C 1.53047 * 109.30828 * 185.58101 * 4 2 1 19 19 C 1.53032 * 109.54237 * 61.36332 * 18 4 2 20 20 C 1.53194 * 109.31281 * 298.63776 * 19 18 4 21 21 N 1.46920 * 109.58648 * 120.35875 * 2 1 3 22 22 C 1.36941 * 120.63271 * 353.37307 * 21 2 1 23 23 H 1.07995 * 120.00005 * 29.70149 * 22 21 2 24 24 C 1.38818 * 120.00084 * 209.70642 * 22 21 2 25 25 N 1.31623 * 119.99869 * 14.94537 * 24 22 21 26 26 Si 1.86791 * 119.99802 * 194.95395 * 24 22 21 27 27 H 1.48493 * 109.47547 * 59.99543 * 26 24 22 28 28 H 1.48498 * 109.47107 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47053 * 299.99379 * 26 24 22 30 30 H 1.08995 * 109.46930 * 180.35330 * 1 2 3 31 31 H 1.09000 * 109.46929 * 300.35750 * 1 2 3 32 32 H 1.09001 * 109.47018 * 60.34822 * 1 2 3 33 33 H 0.96993 * 120.00561 * 24.83619 * 6 4 2 34 34 H 1.07998 * 120.85873 * 0.02562 * 10 9 7 35 35 H 1.08003 * 120.34723 * 179.77486 * 11 10 9 36 36 H 1.07998 * 119.46063 * 179.97438 * 12 11 10 37 37 H 1.08997 * 109.47213 * 358.20867 * 15 14 13 38 38 H 1.08998 * 109.45637 * 181.38649 * 18 4 2 39 39 H 1.09007 * 109.45542 * 301.35347 * 18 4 2 40 40 H 1.09006 * 109.49842 * 58.58060 * 19 18 4 41 41 H 1.08995 * 109.50057 * 178.65411 * 19 18 4 42 42 H 1.08998 * 109.58525 * 174.42195 * 20 19 18 43 43 H 1.09005 * 109.58580 * 294.84561 * 20 19 18 44 44 H 0.96994 * 119.99629 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7294 -1.2455 5 1 1.6029 -1.7253 -1.2920 6 7 1.6705 0.0268 -2.4435 7 6 1.5504 -0.6042 -3.6284 8 8 1.7510 -1.8008 -3.7029 9 6 1.1745 0.1590 -4.8375 10 6 1.0522 1.5530 -4.7901 11 6 0.6930 2.2195 -5.9481 12 6 0.4733 1.4949 -7.1060 13 7 0.6012 0.1819 -7.1224 14 6 0.9410 -0.4973 -6.0464 15 6 1.0726 -1.9967 -6.1201 16 9 0.2032 -2.5871 -5.1967 17 9 2.3892 -2.3644 -5.8223 18 6 3.5675 -0.8481 -1.1702 19 6 3.9569 -1.6658 0.0633 20 6 3.4651 -0.9471 1.3236 21 7 2.0226 -0.6996 1.1944 22 6 1.1538 -1.1128 2.1689 23 1 0.1391 -1.3776 1.9108 24 6 1.5773 -1.1912 3.4886 25 7 2.6952 -0.6022 3.8571 26 14 0.5608 -2.1330 4.7412 27 1 0.4428 -3.5512 4.3174 28 1 1.2248 -2.0669 6.0678 29 1 -0.7930 -1.5298 4.8342 30 1 -0.3633 -1.0276 0.0063 31 1 -0.3633 0.5194 0.8868 32 1 -0.3633 0.5084 -0.8931 33 1 1.5100 0.9815 -2.3840 34 1 1.2301 2.0938 -3.8724 35 1 0.5856 3.2942 -5.9482 36 1 0.1924 2.0125 -8.0113 37 1 0.8194 -2.3347 -7.1250 38 1 3.9377 -1.3448 -2.0670 39 1 4.0061 0.1473 -1.0992 40 1 3.4982 -2.6529 0.0051 41 1 5.0411 -1.7701 0.1032 42 1 3.6519 -1.5719 2.1970 43 1 3.9904 0.0019 1.4316 44 1 2.9913 -0.6573 4.7791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993563587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:10 Heat of formation + Delta-G solvation = -92.554350 kcal Electronic energy + Delta-G solvation = -30616.691025 eV Core-core repulsion = 26204.680266 eV Total energy + Delta-G solvation = -4412.010759 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.83976 -47.85120 -41.81048 -40.55878 -39.10198 -36.00771 -34.56304 -33.87530 -33.36657 -33.09431 -30.88905 -28.22107 -27.62450 -26.86737 -25.68418 -24.08425 -23.22021 -22.34706 -21.74410 -21.13196 -19.24983 -18.57994 -18.39782 -18.20296 -18.13374 -17.45929 -16.96647 -16.48206 -16.23338 -16.11631 -15.79840 -15.58633 -15.40167 -15.09334 -14.79471 -14.62901 -14.44734 -14.36800 -14.19300 -14.13007 -14.06455 -13.36205 -13.26184 -13.21284 -12.80147 -12.72130 -12.54884 -12.39893 -12.32531 -12.03133 -11.84494 -11.79026 -11.62873 -11.24147 -11.12323 -11.10868 -10.67970 -10.52324 -10.41559 -10.02530 -8.65147 -7.85918 -5.32351 -0.58976 -0.04385 1.46538 1.49862 1.55290 1.78117 1.96499 2.36863 2.52978 2.61044 3.22562 3.29816 3.32019 3.49106 3.65607 3.70759 3.88158 3.90033 4.01859 4.06395 4.12580 4.19486 4.27247 4.34752 4.38721 4.50464 4.60462 4.75811 4.82114 4.87096 4.90545 4.95781 5.02605 5.11806 5.19535 5.26359 5.41660 5.43694 5.47050 5.58192 5.70212 5.75953 6.41643 6.45710 6.60467 7.14310 7.17627 7.86262 8.37703 9.20857 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.019102 B = 0.003035 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.495264 B = 9224.847606 C = 9473.613308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.166 3.834 3 H 0.039 0.961 4 C 0.149 3.851 5 H 0.056 0.944 6 N -0.697 5.697 7 C 0.545 3.455 8 O -0.550 6.550 9 C -0.167 4.167 10 C -0.045 4.045 11 C -0.138 4.138 12 C 0.119 3.881 13 N -0.479 5.479 14 C 0.081 3.919 15 C 0.325 3.675 16 F -0.203 7.203 17 F -0.201 7.201 18 C -0.108 4.108 19 C -0.130 4.130 20 C 0.177 3.823 21 N -0.600 5.600 22 C -0.256 4.256 23 H 0.071 0.929 24 C -0.046 4.046 25 N -0.932 5.932 26 Si 0.960 3.040 27 H -0.284 1.284 28 H -0.294 1.294 29 H -0.274 1.274 30 H 0.037 0.963 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.411 0.589 34 H 0.172 0.828 35 H 0.195 0.805 36 H 0.209 0.791 37 H 0.151 0.849 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.041 0.959 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.007 0.993 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.820 9.707 -23.530 25.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.059 3.941 3 H 0.057 0.943 4 C 0.043 3.957 5 H 0.074 0.926 6 N -0.349 5.349 7 C 0.332 3.668 8 O -0.428 6.428 9 C -0.173 4.173 10 C -0.070 4.070 11 C -0.157 4.157 12 C -0.038 4.038 13 N -0.188 5.188 14 C -0.059 4.059 15 C 0.270 3.730 16 F -0.184 7.184 17 F -0.182 7.182 18 C -0.147 4.147 19 C -0.170 4.170 20 C 0.052 3.948 21 N -0.324 5.324 22 C -0.387 4.387 23 H 0.088 0.912 24 C -0.241 4.241 25 N -0.578 5.578 26 Si 0.789 3.211 27 H -0.211 1.211 28 H -0.220 1.220 29 H -0.199 1.199 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.249 0.751 34 H 0.190 0.810 35 H 0.212 0.788 36 H 0.225 0.775 37 H 0.168 0.832 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.025 0.975 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.766 8.386 -24.128 25.820 hybrid contribution -0.024 -0.084 2.138 2.140 sum -3.790 8.302 -21.990 23.809 Atomic orbital electron populations 1.21731 0.94497 1.00975 1.01311 1.20714 0.94215 0.93612 0.85518 0.94348 1.21335 0.94907 0.95510 0.83974 0.92608 1.45692 1.69660 1.12676 1.06891 1.18440 0.77526 0.87088 0.83794 1.90878 1.50493 1.15782 1.85656 1.20811 1.05755 0.96559 0.94136 1.22246 0.92313 0.90930 1.01556 1.22773 0.96926 1.04289 0.91719 1.23805 0.91706 0.87856 1.00409 1.67367 1.12171 1.11476 1.27755 1.21705 0.98026 0.96289 0.89857 1.20302 0.72947 0.87100 0.92620 1.93002 1.69672 1.85017 1.70759 1.93003 1.37853 1.92264 1.95062 1.21671 0.95270 1.00432 0.97300 1.22027 1.00300 0.98696 0.95953 1.20625 0.83172 0.96170 0.94853 1.44248 1.03144 1.65911 1.19085 1.19398 0.95426 1.37160 0.86668 0.91189 1.25743 0.99019 1.00691 0.98664 1.70146 1.25149 1.45675 1.16802 0.85456 0.78559 0.78885 0.78245 1.21056 1.22026 1.19935 0.94385 0.93023 0.90693 0.75117 0.81049 0.78824 0.77459 0.83185 0.92995 0.91232 0.94024 0.90955 0.92772 0.97495 0.94174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 7.84 71.98 0.56 -3.98 16 2 C 0.17 6.44 3.03 44.98 0.14 6.58 16 3 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 4 C 0.15 5.30 1.99 45.07 0.09 5.39 16 5 H 0.06 2.40 7.58 -2.39 -0.02 2.38 16 6 N -0.70 -18.98 4.53 -445.03 -2.02 -20.99 16 7 C 0.55 16.51 7.51 86.78 0.65 17.17 16 8 O -0.55 -21.43 11.05 -3.89 -0.04 -21.48 16 9 C -0.17 -3.83 5.85 -19.99 -0.12 -3.94 16 10 C -0.04 -0.58 9.64 22.73 0.22 -0.36 16 11 C -0.14 -0.98 10.10 22.33 0.23 -0.76 16 12 C 0.12 1.17 11.17 84.71 0.95 2.11 16 13 N -0.48 -8.78 10.24 -182.84 -1.87 -10.65 16 14 C 0.08 1.91 6.31 42.89 0.27 2.19 16 15 C 0.32 8.71 5.02 71.24 0.36 9.07 16 16 F -0.20 -6.73 15.00 44.97 0.67 -6.05 16 17 F -0.20 -6.55 15.07 44.97 0.68 -5.87 16 18 C -0.11 -3.82 5.46 30.62 0.17 -3.65 16 19 C -0.13 -5.20 6.08 30.67 0.19 -5.01 16 20 C 0.18 8.53 5.28 86.36 0.46 8.98 16 21 N -0.60 -29.36 2.99 -675.22 -2.02 -31.38 16 22 C -0.26 -13.78 8.59 84.03 0.72 -13.06 16 23 H 0.07 3.68 6.22 -2.91 -0.02 3.66 16 24 C -0.05 -2.51 4.95 84.86 0.42 -2.09 16 25 N -0.93 -54.22 11.19 21.65 0.24 -53.98 16 26 Si 0.96 44.91 29.58 68.60 2.03 46.94 16 27 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 28 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 29 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 30 H 0.04 1.47 7.40 -2.39 -0.02 1.46 16 31 H 0.05 1.96 7.67 -2.39 -0.02 1.94 16 32 H 0.07 2.06 7.78 -2.39 -0.02 2.04 16 33 H 0.41 8.02 6.74 -92.71 -0.62 7.40 16 34 H 0.17 1.25 6.56 -2.91 -0.02 1.23 16 35 H 0.19 -0.32 8.06 -2.91 -0.02 -0.34 16 36 H 0.21 0.28 8.06 -2.91 -0.02 0.26 16 37 H 0.15 2.88 8.11 -2.39 -0.02 2.86 16 38 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 40 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 41 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 42 H 0.05 2.97 6.12 -2.39 -0.01 2.95 16 43 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 44 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -76.07 357.24 3.39 -72.68 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.42 Total: 12.15 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: 5.30 Total: 18.64 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -5.66 Total: -117.00 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.04 Total: -21.48 kcal Atomic # 9 Polarization: -13.28 SS G_CDS: 1.35 Total: -11.92 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -76.07 3.39 -72.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993563587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.873 kcal (2) G-P(sol) polarization free energy of solvation -76.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds