Wall clock time and date at job start Wed Apr 1 2020 00:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.58879 * 2 1 4 4 C 1.53198 * 109.70581 * 239.64506 * 2 1 3 5 5 H 1.09006 * 109.49268 * 65.55949 * 4 2 1 6 6 N 1.46503 * 109.49687 * 305.49531 * 4 2 1 7 7 C 1.34774 * 119.99801 * 154.99557 * 6 4 2 8 8 O 1.21557 * 120.00214 * 0.02562 * 7 6 4 9 9 C 1.47837 * 120.00103 * 179.97438 * 7 6 4 10 10 C 1.40031 * 120.55769 * 358.41863 * 9 7 6 11 11 C 1.38356 * 118.28883 * 179.97438 * 10 9 7 12 12 C 1.38344 * 119.30431 * 0.02562 * 11 10 9 13 13 N 1.31930 * 121.08319 * 0.02562 * 12 11 10 14 14 C 1.31696 * 121.87489 * 359.67869 * 13 12 11 15 15 C 1.50703 * 119.71881 * 180.28831 * 14 13 12 16 16 F 1.39900 * 109.46987 * 120.20888 * 15 14 13 17 17 F 1.39894 * 109.47474 * 240.21138 * 15 14 13 18 18 C 1.53039 * 109.31484 * 185.50965 * 4 2 1 19 19 C 1.53033 * 109.53842 * 61.36627 * 18 4 2 20 20 C 1.53626 * 109.24222 * 298.51148 * 19 18 4 21 21 N 1.46924 * 109.58660 * 120.28760 * 2 1 3 22 22 C 1.36935 * 120.63173 * 353.51327 * 21 2 1 23 23 H 1.07999 * 119.99583 * 31.25732 * 22 21 2 24 24 C 1.38812 * 120.00227 * 211.25669 * 22 21 2 25 25 N 1.31612 * 120.00001 * 19.31950 * 24 22 21 26 26 Si 1.86799 * 119.99790 * 199.32251 * 24 22 21 27 27 H 1.48497 * 109.46923 * 265.00733 * 26 24 22 28 28 H 1.48496 * 109.47675 * 25.01006 * 26 24 22 29 29 H 1.48497 * 109.47057 * 145.01364 * 26 24 22 30 30 H 1.08999 * 109.47538 * 299.71460 * 1 2 3 31 31 H 1.09004 * 109.47221 * 59.71468 * 1 2 3 32 32 H 1.09001 * 109.47333 * 179.71329 * 1 2 3 33 33 H 0.96992 * 120.00092 * 334.99445 * 6 4 2 34 34 H 1.07997 * 120.85516 * 359.96057 * 10 9 7 35 35 H 1.08004 * 120.34671 * 179.97438 * 11 10 9 36 36 H 1.07997 * 119.46130 * 179.97438 * 12 11 10 37 37 H 1.09002 * 109.46507 * 0.21381 * 15 14 13 38 38 H 1.09001 * 109.46200 * 181.39066 * 18 4 2 39 39 H 1.09006 * 109.45600 * 301.35804 * 18 4 2 40 40 H 1.08994 * 109.49779 * 58.58574 * 19 18 4 41 41 H 1.08999 * 109.49921 * 178.65134 * 19 18 4 42 42 H 1.09005 * 109.74258 * 295.11641 * 20 19 18 43 43 H 1.09000 * 109.66312 * 174.54815 * 20 19 18 44 44 H 0.97002 * 120.00387 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2445 5 1 1.7689 -0.1671 -2.1365 6 7 1.4565 -2.0684 -1.3069 7 6 1.3361 -2.6971 -2.4928 8 8 1.7176 -2.1531 -3.5107 9 6 0.7413 -4.0491 -2.5558 10 6 0.3292 -4.7006 -1.3868 11 6 -0.2219 -5.9646 -1.5001 12 6 -0.3466 -6.5392 -2.7524 13 7 0.0515 -5.9019 -3.8369 14 6 0.5766 -4.6955 -3.7812 15 6 1.0090 -4.0095 -5.0515 16 9 0.3001 -2.8126 -5.1996 17 9 2.3795 -3.7353 -4.9903 18 6 3.5706 -0.8444 -1.1674 19 6 3.9601 -1.6608 0.0669 20 6 3.4659 -0.9376 1.3290 21 7 2.0225 -0.6981 1.1953 22 6 1.1534 -1.1126 2.1689 23 1 0.1470 -1.4035 1.9062 24 6 1.5658 -1.1589 3.4936 25 7 2.6187 -0.4699 3.8794 26 14 0.6264 -2.1993 4.7284 27 1 -0.3656 -1.3513 5.4368 28 1 -0.0780 -3.2962 4.0173 29 1 1.5762 -2.7772 5.7128 30 1 -0.3634 0.5094 0.8925 31 1 -0.3634 0.5183 -0.8874 32 1 -0.3634 -1.0276 -0.0051 33 1 1.1524 -2.5027 -0.4947 34 1 0.4389 -4.2288 -0.4216 35 1 -0.5506 -6.4976 -0.6201 36 1 -0.7760 -7.5259 -2.8438 37 1 0.8061 -4.6597 -5.9025 38 1 3.9430 -1.3407 -2.0635 39 1 4.0071 0.1519 -1.0962 40 1 3.5036 -2.6488 0.0085 41 1 5.0445 -1.7630 0.1082 42 1 3.9860 0.0144 1.4353 43 1 3.6537 -1.5587 2.2049 44 1 2.9067 -0.5020 4.8052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993563590.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:15 Heat of formation + Delta-G solvation = -71.926174 kcal Electronic energy + Delta-G solvation = -31332.337934 eV Core-core repulsion = 26921.221680 eV Total energy + Delta-G solvation = -4411.116254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.68476 -46.66540 -40.79667 -39.37136 -37.53021 -34.14242 -33.26709 -32.45405 -32.18610 -31.55770 -29.45380 -27.01331 -26.23621 -25.08115 -24.71325 -22.74807 -22.00712 -20.99693 -20.55840 -18.83713 -18.20397 -17.55684 -17.26973 -16.98514 -16.52291 -16.08867 -15.34246 -15.31911 -15.07710 -14.86891 -14.42244 -14.13171 -13.96258 -13.54718 -13.49243 -13.29730 -13.18781 -13.10162 -12.95171 -12.88706 -12.58959 -12.21030 -11.91729 -11.32821 -11.30894 -11.25852 -11.07352 -10.76664 -10.68060 -10.58694 -10.26100 -10.19417 -10.12603 -10.09174 -9.74497 -9.56433 -9.52989 -9.33684 -8.61798 -8.50928 -6.73671 -5.90518 -3.35264 0.32634 0.77390 2.87358 3.27039 3.28818 3.34063 3.36279 3.36824 3.61031 4.13102 4.28911 4.37434 4.47939 4.55859 4.76323 4.95473 5.09624 5.16116 5.21560 5.24805 5.27221 5.52875 5.57032 5.62824 5.70522 5.75080 5.91699 6.07132 6.13445 6.18543 6.28798 6.38431 6.48807 6.60494 6.62172 6.72318 6.88570 6.91812 7.03612 7.26975 7.39676 7.53147 7.70500 7.86821 8.33832 8.46848 9.09063 9.72751 10.32164 11.17426 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013750 B = 0.004220 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.886999 B = 6634.041995 C = 7779.205081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.158 3.842 3 H 0.041 0.959 4 C 0.136 3.864 5 H 0.080 0.920 6 N -0.691 5.691 7 C 0.545 3.455 8 O -0.520 6.520 9 C -0.140 4.140 10 C -0.044 4.044 11 C -0.156 4.156 12 C 0.114 3.886 13 N -0.466 5.466 14 C 0.095 3.905 15 C 0.340 3.660 16 F -0.183 7.183 17 F -0.181 7.181 18 C -0.121 4.121 19 C -0.139 4.139 20 C 0.174 3.826 21 N -0.585 5.585 22 C -0.263 4.263 23 H 0.068 0.932 24 C 0.011 3.989 25 N -0.893 5.893 26 Si 0.896 3.104 27 H -0.288 1.288 28 H -0.279 1.279 29 H -0.290 1.290 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.050 0.950 33 H 0.406 0.594 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.168 0.832 37 H 0.119 0.881 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.047 0.953 42 H 0.020 0.980 43 H 0.078 0.922 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.339 -9.987 -11.942 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.051 3.949 3 H 0.059 0.941 4 C 0.030 3.970 5 H 0.098 0.902 6 N -0.342 5.342 7 C 0.329 3.671 8 O -0.397 6.397 9 C -0.146 4.146 10 C -0.070 4.070 11 C -0.176 4.176 12 C -0.043 4.043 13 N -0.174 5.174 14 C -0.045 4.045 15 C 0.285 3.715 16 F -0.164 7.164 17 F -0.162 7.162 18 C -0.160 4.160 19 C -0.179 4.179 20 C 0.048 3.952 21 N -0.309 5.309 22 C -0.392 4.392 23 H 0.086 0.914 24 C -0.189 4.189 25 N -0.535 5.535 26 Si 0.725 3.275 27 H -0.214 1.214 28 H -0.204 1.204 29 H -0.216 1.216 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.243 0.757 34 H 0.169 0.831 35 H 0.167 0.833 36 H 0.185 0.815 37 H 0.136 0.864 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.039 0.961 43 H 0.096 0.904 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.060 -9.906 -13.279 17.057 hybrid contribution -0.394 -0.297 2.244 2.298 sum -4.454 -10.203 -11.035 15.675 Atomic orbital electron populations 1.21769 0.95593 1.01252 1.00604 1.20742 0.93378 0.94002 0.86780 0.94136 1.21592 0.92966 0.82398 1.00049 0.90247 1.45859 1.61225 1.18700 1.08415 1.17939 0.79794 0.84664 0.84679 1.90851 1.49008 1.66302 1.33580 1.21017 1.02009 0.97110 0.94419 1.22019 0.92215 0.94245 0.98561 1.22287 0.99622 0.95877 0.99825 1.22947 0.94413 0.99468 0.87442 1.67316 1.09647 1.07197 1.33265 1.21860 0.96526 0.91688 0.94424 1.19745 0.74488 0.82568 0.94677 1.93042 1.78099 1.48984 1.96302 1.93052 1.31389 1.94517 1.97263 1.21767 0.95338 1.00573 0.98281 1.22195 0.98985 0.99419 0.97273 1.20818 0.83355 0.97022 0.94013 1.44178 1.02908 1.65024 1.18780 1.19064 0.96047 1.38239 0.85878 0.91413 1.25109 0.98100 0.98710 0.96989 1.70063 1.27323 1.39851 1.16295 0.86412 0.79167 0.80460 0.81444 1.21450 1.20446 1.21608 0.91659 0.94122 0.93063 0.75665 0.83118 0.83328 0.81502 0.86352 0.92881 0.91755 0.92991 0.93402 0.96138 0.90387 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 7.75 37.15 0.29 -2.09 16 2 C 0.16 3.03 3.19 -67.60 -0.22 2.82 16 3 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.14 2.38 2.33 -67.81 -0.16 2.22 16 5 H 0.08 1.41 7.58 -51.93 -0.39 1.02 16 6 N -0.69 -11.35 3.42 -54.63 -0.19 -11.54 16 7 C 0.55 9.12 7.55 -12.33 -0.09 9.02 16 8 O -0.52 -9.94 11.00 5.32 0.06 -9.88 16 9 C -0.14 -2.01 5.85 -104.82 -0.61 -2.62 16 10 C -0.04 -0.51 9.65 -38.87 -0.37 -0.89 16 11 C -0.16 -1.42 10.10 -39.50 -0.40 -1.81 16 12 C 0.11 1.05 11.17 -17.47 -0.20 0.85 16 13 N -0.47 -5.56 10.24 -9.15 -0.09 -5.66 16 14 C 0.10 1.32 6.31 -82.17 -0.52 0.80 16 15 C 0.34 4.73 5.02 36.01 0.18 4.91 16 16 F -0.18 -2.94 15.10 2.25 0.03 -2.91 16 17 F -0.18 -2.95 14.96 2.25 0.03 -2.92 16 18 C -0.12 -2.12 5.58 -26.69 -0.15 -2.27 16 19 C -0.14 -2.57 5.95 -26.39 -0.16 -2.72 16 20 C 0.17 3.82 5.33 -3.48 -0.02 3.80 16 21 N -0.59 -12.91 2.62 -164.51 -0.43 -13.35 16 22 C -0.26 -6.32 8.49 -15.06 -0.13 -6.45 16 23 H 0.07 1.57 6.32 -52.49 -0.33 1.24 16 24 C 0.01 0.28 4.82 -17.43 -0.08 0.20 16 25 N -0.89 -24.31 11.58 55.49 0.64 -23.67 16 26 Si 0.90 19.96 29.60 -169.99 -5.03 14.93 16 27 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 29 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 30 H 0.06 1.25 7.64 -51.93 -0.40 0.85 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.88 6.39 -51.93 -0.33 0.55 16 33 H 0.41 6.60 5.89 -40.82 -0.24 6.36 16 34 H 0.15 1.68 6.52 -52.49 -0.34 1.33 16 35 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 36 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.12 1.22 8.11 -51.93 -0.42 0.80 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.96 7.53 -51.93 -0.39 0.57 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 1.92 6.37 -51.93 -0.33 1.59 16 44 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 354.56 15.07 5.34 5.34 Total: -1.00 -29.87 354.56 -7.96 -37.83 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.70 Total: 6.04 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -2.64 Total: 5.77 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.07 Total: -54.21 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.06 Total: -9.88 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.07 Total: -5.83 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.87 -7.96 -37.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993563590.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.092 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds